Wall clock time and date at job start Wed Apr 1 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48496 * 109.47562 * 269.72673 * 3 2 1 5 5 H 1.48496 * 109.47258 * 29.73026 * 3 2 1 6 6 H 1.48507 * 109.47189 * 149.72802 * 3 2 1 7 7 C 1.38820 * 120.00134 * 179.72854 * 2 1 3 8 8 H 1.07996 * 119.99726 * 176.31360 * 7 2 1 9 9 N 1.36933 * 119.99883 * 356.31407 * 7 2 1 10 10 C 1.47156 * 120.98436 * 34.94148 * 9 7 2 11 11 C 1.53292 * 108.38383 * 129.44364 * 10 9 7 12 12 O 1.42966 * 109.22360 * 52.30442 * 11 10 9 13 13 C 1.42966 * 114.16346 * 297.41590 * 12 11 10 14 14 H 1.08998 * 109.51528 * 302.66066 * 13 12 11 15 15 C 1.52999 * 109.50946 * 182.55565 * 13 12 11 16 16 N 1.46499 * 109.46909 * 65.00284 * 15 13 12 17 17 C 1.34781 * 119.99480 * 179.97438 * 16 15 13 18 18 O 1.21552 * 120.00351 * 359.97438 * 17 16 15 19 19 C 1.47851 * 119.99378 * 180.02562 * 17 16 15 20 20 C 1.39590 * 120.14661 * 333.82578 * 19 17 16 21 21 C 1.37937 * 119.85298 * 179.74704 * 20 19 17 22 22 C 1.38389 * 120.14519 * 0.53578 * 21 20 19 23 23 C 1.38342 * 120.28923 * 359.73973 * 22 21 20 24 24 C 1.37976 * 120.14470 * 359.97438 * 23 22 21 25 25 C 1.50706 * 120.07304 * 179.97438 * 24 23 22 26 26 C 1.53779 * 113.61159 * 30.65192 * 25 24 23 27 27 C 1.53777 * 87.08360 * 220.02068 * 26 25 24 28 28 C 1.53777 * 113.61224 * 293.15873 * 25 24 23 29 29 C 1.47151 * 120.98058 * 214.66361 * 9 7 2 30 30 H 0.96994 * 120.00250 * 0.27148 * 1 2 3 31 31 H 1.08997 * 109.68416 * 249.16798 * 10 9 7 32 32 H 1.09002 * 109.67710 * 9.68266 * 10 9 7 33 33 H 1.09004 * 109.51198 * 172.22607 * 11 10 9 34 34 H 1.08998 * 109.51400 * 292.32913 * 11 10 9 35 35 H 1.09001 * 109.47119 * 185.00514 * 15 13 12 36 36 H 1.09002 * 109.47058 * 304.99925 * 15 13 12 37 37 H 0.96995 * 120.00097 * 0.02562 * 16 15 13 38 38 H 1.08002 * 120.07479 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.92950 * 180.27243 * 21 20 19 40 40 H 1.07996 * 119.85235 * 179.76315 * 22 21 20 41 41 H 1.08000 * 119.92747 * 180.02562 * 23 22 21 42 42 H 1.08996 * 112.84619 * 161.95924 * 25 24 23 43 43 H 1.08996 * 113.61772 * 334.57498 * 26 25 24 44 44 H 1.09008 * 113.61097 * 105.46817 * 26 25 24 45 45 H 1.09012 * 113.61145 * 270.89080 * 27 26 25 46 46 H 1.08989 * 113.69358 * 139.99847 * 27 26 25 47 47 H 1.08997 * 113.61553 * 254.52224 * 28 25 24 48 48 H 1.08996 * 113.61834 * 25.34800 * 28 25 24 49 49 H 1.08997 * 109.68153 * 350.27480 * 29 9 7 50 50 H 1.08996 * 109.68726 * 110.83295 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5034 2.0432 -1.4000 5 1 1.4447 2.6543 0.6943 6 1 3.5448 1.4419 0.7058 7 6 2.0103 -1.2022 0.0057 8 1 3.0885 -1.2034 -0.0544 9 7 1.3277 -2.3865 0.0875 10 6 0.0152 -2.5505 -0.5573 11 6 0.0470 -3.8310 -1.3995 12 8 0.4952 -4.9181 -0.5865 13 6 1.8260 -4.7654 -0.0869 14 1 2.5155 -4.6359 -0.9211 15 6 2.2180 -6.0103 0.7116 16 7 2.2714 -7.1682 -0.1843 17 6 2.5986 -8.3819 0.3021 18 8 2.8499 -8.5156 1.4838 19 6 2.6530 -9.5504 -0.6022 20 6 1.8842 -9.5717 -1.7671 21 6 1.9436 -10.6627 -2.6091 22 6 2.7545 -11.7393 -2.2954 23 6 3.5146 -11.7269 -1.1396 24 6 3.4689 -10.6393 -0.2918 25 6 4.2971 -10.6278 0.9672 26 6 5.6105 -11.4186 0.8477 27 6 5.3476 -11.9193 2.2777 28 6 3.8544 -11.6723 2.0053 29 6 1.8878 -3.5346 0.8179 30 1 -0.4850 0.8400 -0.0040 31 1 -0.7605 -2.6312 0.2041 32 1 -0.1881 -1.6932 -1.1991 33 1 -0.9539 -4.0452 -1.7743 34 1 0.7294 -3.6977 -2.2390 35 1 3.1968 -5.8571 1.1661 36 1 1.4788 -6.1888 1.4925 37 1 2.0719 -7.0613 -1.1275 38 1 1.2477 -8.7339 -2.0110 39 1 1.3526 -10.6786 -3.5129 40 1 2.7945 -12.5927 -2.9561 41 1 4.1458 -12.5701 -0.9007 42 1 4.4242 -9.6275 1.3810 43 1 5.5785 -12.2073 0.0960 44 1 6.4945 -10.7865 0.7619 45 1 5.7633 -11.2722 3.0502 46 1 5.5965 -12.9699 2.4265 47 1 3.3206 -11.2452 2.8542 48 1 3.3410 -12.5298 1.5704 49 1 2.9242 -3.3291 1.0857 50 1 1.3040 -3.7161 1.7202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035596458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:31 Heat of formation + Delta-G solvation = -10.803250 kcal Electronic energy + Delta-G solvation = -29968.704238 eV Core-core repulsion = 25962.126383 eV Total energy + Delta-G solvation = -4006.577855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.77755 -39.12612 -38.33181 -37.78130 -34.93162 -34.29476 -32.00909 -31.43465 -31.23963 -30.41072 -27.55716 -26.06073 -25.76598 -25.26251 -23.72190 -23.17646 -22.23899 -21.53952 -20.61775 -19.63112 -19.28061 -18.00104 -16.94110 -16.56363 -16.13688 -15.97325 -15.67541 -15.16012 -14.99377 -14.88299 -14.62821 -14.51043 -14.25525 -13.92206 -13.62916 -13.33076 -13.20145 -13.04694 -12.71802 -12.69160 -12.61540 -12.33647 -12.10719 -11.94279 -11.67315 -11.55380 -11.04394 -10.95297 -10.81292 -10.70172 -10.58485 -10.41748 -10.40003 -10.24045 -10.12324 -9.75568 -9.62033 -9.22572 -9.04435 -9.00711 -8.82076 -8.55568 -6.66719 -5.88148 -3.42195 0.72203 1.10200 2.78258 3.19025 3.31206 3.38534 3.40153 3.59283 4.22559 4.38170 4.39134 4.44318 4.58202 4.62985 4.68079 4.77453 4.86886 4.93838 5.10003 5.14703 5.22869 5.31475 5.46668 5.49088 5.52475 5.52906 5.61035 5.65810 5.71610 5.79845 5.81353 5.84151 5.92143 5.97068 6.02709 6.07447 6.14775 6.19334 6.23240 6.29973 6.37388 6.48197 6.49984 6.57170 6.64680 6.74644 7.14496 7.54013 7.58858 7.68271 7.86020 8.22543 8.38038 9.11290 9.69160 10.30088 11.18340 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.002185 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.177183 B =12811.805072 C =13707.988781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.011 3.989 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.137 3.863 11 C 0.037 3.963 12 O -0.391 6.391 13 C 0.065 3.935 14 H 0.057 0.943 15 C 0.131 3.869 16 N -0.714 5.714 17 C 0.555 3.445 18 O -0.534 6.534 19 C -0.130 4.130 20 C -0.084 4.084 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.130 4.130 24 C -0.013 4.013 25 C -0.084 4.084 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.123 4.123 29 C 0.122 3.878 30 H 0.256 0.744 31 H 0.026 0.974 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.403 0.597 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 -24.345 -4.285 25.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.012 3.988 11 C -0.041 4.041 12 O -0.310 6.310 13 C 0.005 3.995 14 H 0.075 0.925 15 C 0.007 3.993 16 N -0.365 5.365 17 C 0.342 3.658 18 O -0.412 6.412 19 C -0.133 4.133 20 C -0.103 4.103 21 C -0.151 4.151 22 C -0.114 4.114 23 C -0.148 4.148 24 C -0.014 4.014 25 C -0.102 4.102 26 C -0.178 4.178 27 C -0.178 4.178 28 C -0.160 4.160 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.238 0.762 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.383 -24.376 -3.366 25.421 hybrid contribution 0.252 1.258 -0.681 1.453 sum 6.635 -23.118 -4.047 24.389 Atomic orbital electron populations 1.69895 1.05409 1.25717 1.53688 1.25338 0.95591 0.98404 0.99516 0.86243 0.79175 0.83314 0.77728 1.21325 1.21427 1.20293 1.19135 0.90678 0.82868 1.46127 0.91634 1.43962 1.19679 1.09456 1.58804 1.21571 0.87121 0.94633 0.95473 1.23386 0.98060 0.89320 0.93292 1.87786 1.30058 1.44110 1.69055 1.22724 0.85056 0.94732 0.97026 0.92504 1.21446 1.01974 0.83156 0.92740 1.45911 1.69664 1.07830 1.13050 1.18271 0.77080 0.82813 0.87636 1.90711 1.49033 1.85119 1.16376 1.19864 1.01351 0.95627 0.96442 1.21382 0.97554 0.98670 0.92667 1.21092 1.00022 0.93949 1.00011 1.21317 0.95396 0.98191 0.96522 1.21010 1.00571 0.98319 0.94858 1.19832 0.94452 0.91801 0.95307 1.21955 0.94003 1.01683 0.92553 1.23118 0.97550 0.99769 0.97367 1.22797 0.96851 1.01073 0.97118 1.22840 0.96312 0.97982 0.98862 1.21375 0.98542 0.87326 0.93260 0.93338 0.95572 0.87951 0.90157 0.94251 0.90033 0.90503 0.76248 0.85266 0.85488 0.85748 0.85411 0.85757 0.90048 0.91420 0.90064 0.91601 0.90935 0.90512 0.91802 0.95224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 10.70 55.49 0.59 -24.99 16 2 C 0.01 0.29 5.32 -17.43 -0.09 0.20 16 3 Si 0.91 21.21 29.56 -169.99 -5.02 16.19 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.96 9.60 -15.06 -0.14 -7.10 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.60 -14.78 3.05 -172.08 -0.53 -15.30 16 10 C 0.14 3.26 5.39 -3.53 -0.02 3.24 16 11 C 0.04 0.71 6.98 37.31 0.26 0.97 16 12 O -0.39 -7.25 10.33 -35.23 -0.36 -7.61 16 13 C 0.06 1.12 2.80 -26.79 -0.07 1.04 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.97 5.35 -4.04 -0.02 1.94 16 16 N -0.71 -9.62 5.42 -61.25 -0.33 -9.95 16 17 C 0.55 7.86 7.33 -12.32 -0.09 7.77 16 18 O -0.53 -8.89 13.84 5.32 0.07 -8.82 16 19 C -0.13 -1.56 5.85 -104.97 -0.61 -2.18 16 20 C -0.08 -0.84 9.36 -39.19 -0.37 -1.21 16 21 C -0.13 -1.12 10.03 -39.64 -0.40 -1.51 16 22 C -0.10 -0.76 10.04 -39.49 -0.40 -1.16 16 23 C -0.13 -1.15 8.96 -39.64 -0.36 -1.51 16 24 C -0.01 -0.14 5.30 -104.22 -0.55 -0.70 16 25 C -0.08 -0.93 3.12 -90.96 -0.28 -1.21 16 26 C -0.14 -1.22 7.44 -25.92 -0.19 -1.41 16 27 C -0.14 -1.18 8.08 -25.92 -0.21 -1.39 16 28 C -0.12 -1.22 7.57 -25.92 -0.20 -1.42 16 29 C 0.12 2.53 6.00 -3.75 -0.02 2.51 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.10 2.67 6.14 -51.93 -0.32 2.35 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.40 4.80 7.17 -40.82 -0.29 4.51 16 38 H 0.13 1.15 7.14 -52.49 -0.37 0.78 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.89 6.26 -52.49 -0.33 0.56 16 42 H 0.12 1.69 5.49 -51.93 -0.29 1.40 16 43 H 0.08 0.59 6.00 -51.93 -0.31 0.28 16 44 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 45 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 46 H 0.07 0.46 8.14 -51.94 -0.42 0.04 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.70 7.95 -51.93 -0.41 0.28 16 49 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -30.87 394.67 -11.18 -42.05 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.78 Total: 5.61 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.77 Total: -3.12 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.26 Total: -50.24 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.29 Total: -16.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.87 -11.18 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035596458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.245 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds