Wall clock time and date at job start Wed Apr 1 2020 02:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48496 * 109.47562 * 269.72673 * 3 2 1 5 5 H 1.48496 * 109.47258 * 29.73026 * 3 2 1 6 6 H 1.48507 * 109.47189 * 149.72802 * 3 2 1 7 7 C 1.38820 * 120.00134 * 179.72854 * 2 1 3 8 8 H 1.07996 * 119.99726 * 176.31360 * 7 2 1 9 9 N 1.36933 * 119.99883 * 356.31407 * 7 2 1 10 10 C 1.47156 * 120.98436 * 34.94148 * 9 7 2 11 11 C 1.53292 * 108.38383 * 129.44364 * 10 9 7 12 12 O 1.42966 * 109.22360 * 52.30442 * 11 10 9 13 13 C 1.42966 * 114.16346 * 297.41590 * 12 11 10 14 14 H 1.08998 * 109.51528 * 302.66066 * 13 12 11 15 15 C 1.52999 * 109.50946 * 182.55565 * 13 12 11 16 16 N 1.46499 * 109.46909 * 65.00284 * 15 13 12 17 17 C 1.34781 * 119.99480 * 179.97438 * 16 15 13 18 18 O 1.21552 * 120.00351 * 359.97438 * 17 16 15 19 19 C 1.47851 * 119.99378 * 180.02562 * 17 16 15 20 20 C 1.39590 * 120.14661 * 333.82578 * 19 17 16 21 21 C 1.37937 * 119.85298 * 179.74704 * 20 19 17 22 22 C 1.38389 * 120.14519 * 0.53578 * 21 20 19 23 23 C 1.38342 * 120.28923 * 359.73973 * 22 21 20 24 24 C 1.37976 * 120.14470 * 359.97438 * 23 22 21 25 25 C 1.50706 * 120.07304 * 179.97438 * 24 23 22 26 26 C 1.53779 * 113.61159 * 30.65192 * 25 24 23 27 27 C 1.53777 * 87.08360 * 220.02068 * 26 25 24 28 28 C 1.53777 * 113.61224 * 293.15873 * 25 24 23 29 29 C 1.47151 * 120.98058 * 214.66361 * 9 7 2 30 30 H 0.96994 * 120.00250 * 0.27148 * 1 2 3 31 31 H 1.08997 * 109.68416 * 249.16798 * 10 9 7 32 32 H 1.09002 * 109.67710 * 9.68266 * 10 9 7 33 33 H 1.09004 * 109.51198 * 172.22607 * 11 10 9 34 34 H 1.08998 * 109.51400 * 292.32913 * 11 10 9 35 35 H 1.09001 * 109.47119 * 185.00514 * 15 13 12 36 36 H 1.09002 * 109.47058 * 304.99925 * 15 13 12 37 37 H 0.96995 * 120.00097 * 0.02562 * 16 15 13 38 38 H 1.08002 * 120.07479 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.92950 * 180.27243 * 21 20 19 40 40 H 1.07996 * 119.85235 * 179.76315 * 22 21 20 41 41 H 1.08000 * 119.92747 * 180.02562 * 23 22 21 42 42 H 1.08996 * 112.84619 * 161.95924 * 25 24 23 43 43 H 1.08996 * 113.61772 * 334.57498 * 26 25 24 44 44 H 1.09008 * 113.61097 * 105.46817 * 26 25 24 45 45 H 1.09012 * 113.61145 * 270.89080 * 27 26 25 46 46 H 1.08989 * 113.69358 * 139.99847 * 27 26 25 47 47 H 1.08997 * 113.61553 * 254.52224 * 28 25 24 48 48 H 1.08996 * 113.61834 * 25.34800 * 28 25 24 49 49 H 1.08997 * 109.68153 * 350.27480 * 29 9 7 50 50 H 1.08996 * 109.68726 * 110.83295 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5034 2.0432 -1.4000 5 1 1.4447 2.6543 0.6943 6 1 3.5448 1.4419 0.7058 7 6 2.0103 -1.2022 0.0057 8 1 3.0885 -1.2034 -0.0544 9 7 1.3277 -2.3865 0.0875 10 6 0.0152 -2.5505 -0.5573 11 6 0.0470 -3.8310 -1.3995 12 8 0.4952 -4.9181 -0.5865 13 6 1.8260 -4.7654 -0.0869 14 1 2.5155 -4.6359 -0.9211 15 6 2.2180 -6.0103 0.7116 16 7 2.2714 -7.1682 -0.1843 17 6 2.5986 -8.3819 0.3021 18 8 2.8499 -8.5156 1.4838 19 6 2.6530 -9.5504 -0.6022 20 6 1.8842 -9.5717 -1.7671 21 6 1.9436 -10.6627 -2.6091 22 6 2.7545 -11.7393 -2.2954 23 6 3.5146 -11.7269 -1.1396 24 6 3.4689 -10.6393 -0.2918 25 6 4.2971 -10.6278 0.9672 26 6 5.6105 -11.4186 0.8477 27 6 5.3476 -11.9193 2.2777 28 6 3.8544 -11.6723 2.0053 29 6 1.8878 -3.5346 0.8179 30 1 -0.4850 0.8400 -0.0040 31 1 -0.7605 -2.6312 0.2041 32 1 -0.1881 -1.6932 -1.1991 33 1 -0.9539 -4.0452 -1.7743 34 1 0.7294 -3.6977 -2.2390 35 1 3.1968 -5.8571 1.1661 36 1 1.4788 -6.1888 1.4925 37 1 2.0719 -7.0613 -1.1275 38 1 1.2477 -8.7339 -2.0110 39 1 1.3526 -10.6786 -3.5129 40 1 2.7945 -12.5927 -2.9561 41 1 4.1458 -12.5701 -0.9007 42 1 4.4242 -9.6275 1.3810 43 1 5.5785 -12.2073 0.0960 44 1 6.4945 -10.7865 0.7619 45 1 5.7633 -11.2722 3.0502 46 1 5.5965 -12.9699 2.4265 47 1 3.3206 -11.2452 2.8542 48 1 3.3410 -12.5298 1.5704 49 1 2.9242 -3.3291 1.0857 50 1 1.3040 -3.7161 1.7202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035596458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:30 Heat of formation + Delta-G solvation = -28.469862 kcal Electronic energy + Delta-G solvation = -29969.470320 eV Core-core repulsion = 25962.126383 eV Total energy + Delta-G solvation = -4007.343936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.66086 -40.37273 -39.61780 -38.52585 -36.51420 -35.81399 -33.45999 -32.80142 -32.12252 -31.66359 -29.23375 -27.40165 -26.48868 -26.29256 -25.06390 -24.54179 -23.45285 -22.56739 -21.81189 -21.14179 -20.02816 -19.04700 -18.76451 -17.57309 -17.42333 -17.10201 -16.85734 -16.58006 -16.21352 -15.95361 -15.87241 -15.48068 -15.34909 -15.24681 -15.00890 -14.91145 -14.56210 -14.22777 -14.13985 -13.66333 -13.39581 -13.30687 -13.27855 -12.86808 -12.81825 -12.80665 -12.68649 -12.52342 -12.28811 -12.15733 -12.08578 -11.96265 -11.60560 -11.37123 -11.31530 -11.13770 -10.76680 -10.66361 -10.57505 -10.18286 -9.87173 -9.59652 -8.65379 -7.92964 -5.50986 -0.05169 0.41713 1.44916 1.47063 1.55960 1.81727 2.09626 2.45226 2.75387 2.83776 3.23418 3.48472 3.64045 3.71808 3.75481 3.88022 3.95078 4.01837 4.04265 4.11797 4.19993 4.23590 4.24942 4.46344 4.47161 4.50852 4.55276 4.61542 4.70999 4.74893 4.82402 4.84151 4.89915 4.90279 4.94266 5.04504 5.06115 5.12143 5.13905 5.24912 5.26828 5.34571 5.41013 5.53567 5.53872 5.57129 5.64695 5.75276 5.99108 6.25537 6.36884 6.48871 7.07709 7.15570 7.71001 8.28394 9.11238 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.002185 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.177183 B =12811.805072 C =13707.988781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.043 4.043 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.271 4.271 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.141 3.859 11 C 0.052 3.948 12 O -0.390 6.390 13 C 0.080 3.920 14 H 0.067 0.933 15 C 0.142 3.858 16 N -0.708 5.708 17 C 0.552 3.448 18 O -0.567 6.567 19 C -0.157 4.157 20 C -0.090 4.090 21 C -0.133 4.133 22 C -0.087 4.087 23 C -0.131 4.131 24 C -0.027 4.027 25 C -0.094 4.094 26 C -0.131 4.131 27 C -0.135 4.135 28 C -0.124 4.124 29 C 0.118 3.882 30 H 0.253 0.747 31 H -0.004 1.004 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.412 0.588 38 H 0.136 0.864 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.049 0.951 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 -26.852 -6.340 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.401 4.401 8 H 0.087 0.913 9 N -0.339 5.339 10 C 0.016 3.984 11 C -0.026 4.026 12 O -0.310 6.310 13 C 0.020 3.980 14 H 0.085 0.915 15 C 0.018 3.982 16 N -0.359 5.359 17 C 0.341 3.659 18 O -0.448 6.448 19 C -0.160 4.160 20 C -0.109 4.109 21 C -0.151 4.151 22 C -0.105 4.105 23 C -0.149 4.149 24 C -0.028 4.028 25 C -0.112 4.112 26 C -0.168 4.168 27 C -0.172 4.172 28 C -0.161 4.161 29 C -0.008 4.008 30 H 0.062 0.938 31 H 0.015 0.985 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.248 0.752 38 H 0.154 0.846 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.167 0.833 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.068 0.932 48 H 0.107 0.893 49 H 0.090 0.910 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 7.566 -26.909 -5.441 28.477 hybrid contribution -0.127 1.983 -0.032 1.988 sum 7.439 -24.926 -5.473 26.581 Atomic orbital electron populations 1.70079 1.06758 1.26078 1.54916 1.26104 0.96392 1.01646 0.99729 0.85207 0.77991 0.79041 0.77788 1.20657 1.21983 1.19399 1.19471 0.91112 0.83927 1.45555 0.91260 1.44224 1.19849 1.10124 1.59744 1.21403 0.86105 0.96157 0.94755 1.23209 0.99997 0.86983 0.92408 1.87803 1.30680 1.43495 1.68987 1.22553 0.84804 0.94035 0.96617 0.91534 1.21191 1.01802 0.82943 0.92276 1.45787 1.69660 1.07270 1.13217 1.18716 0.76132 0.83402 0.87612 1.90697 1.50493 1.85651 1.17945 1.19809 1.03541 0.95301 0.97317 1.21534 0.97320 0.99749 0.92246 1.21446 1.00007 0.93281 1.00387 1.21745 0.93783 0.98802 0.96177 1.21270 1.00899 0.98030 0.94700 1.19984 0.94640 0.92464 0.95739 1.21867 0.95845 1.00457 0.93081 1.23111 0.96035 0.99718 0.97953 1.22769 0.95347 1.02143 0.96929 1.22860 0.97333 0.97996 0.97949 1.21508 0.98479 0.87524 0.93313 0.93791 0.98544 0.90608 0.87423 0.93247 0.89384 0.91905 0.75187 0.84649 0.82907 0.82463 0.83272 0.89065 0.87999 0.91602 0.90761 0.89572 0.93182 0.89272 0.90998 0.96425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 10.70 21.65 0.23 -54.06 16 2 C -0.04 -2.36 5.32 84.86 0.45 -1.90 16 3 Si 0.97 44.02 29.56 68.60 2.03 46.05 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.27 -14.72 9.60 84.04 0.81 -13.91 16 8 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 9 N -0.61 -31.02 3.05 -698.34 -2.13 -33.15 16 10 C 0.14 6.85 5.39 86.35 0.47 7.31 16 11 C 0.05 1.92 6.98 72.08 0.50 2.43 16 12 O -0.39 -14.11 10.33 -148.98 -1.54 -15.65 16 13 C 0.08 2.71 2.80 30.56 0.09 2.79 16 14 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 15 C 0.14 4.30 5.35 86.38 0.46 4.76 16 16 N -0.71 -18.94 5.42 -465.96 -2.52 -21.46 16 17 C 0.55 15.96 7.33 86.79 0.64 16.60 16 18 O -0.57 -19.83 13.84 -3.88 -0.05 -19.88 16 19 C -0.16 -3.70 5.85 -20.09 -0.12 -3.82 16 20 C -0.09 -1.65 9.36 22.52 0.21 -1.44 16 21 C -0.13 -1.80 10.03 22.23 0.22 -1.58 16 22 C -0.09 -1.04 10.04 22.33 0.22 -0.81 16 23 C -0.13 -1.95 8.96 22.23 0.20 -1.75 16 24 C -0.03 -0.58 5.30 -19.61 -0.10 -0.68 16 25 C -0.09 -2.09 3.12 -11.01 -0.03 -2.12 16 26 C -0.13 -2.07 7.44 31.12 0.23 -1.84 16 27 C -0.13 -2.10 8.08 31.12 0.25 -1.85 16 28 C -0.12 -2.44 7.57 31.12 0.24 -2.21 16 29 C 0.12 4.94 6.00 86.22 0.52 5.46 16 30 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.08 4.08 6.14 -2.39 -0.01 4.06 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.41 9.41 7.17 -92.71 -0.66 8.74 16 38 H 0.14 2.20 7.14 -2.91 -0.02 2.17 16 39 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.15 1.50 6.26 -2.91 -0.02 1.48 16 42 H 0.09 2.64 5.49 -2.39 -0.01 2.63 16 43 H 0.10 1.18 6.00 -2.39 -0.01 1.16 16 44 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.09 1.50 7.95 -2.39 -0.02 1.48 16 49 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 50 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -69.04 394.67 1.54 -67.50 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.28 Total: 25.22 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.25 Total: 5.43 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -4.43 Total: -108.67 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.59 Total: -35.54 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -69.04 1.54 -67.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035596458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.035 kcal (2) G-P(sol) polarization free energy of solvation -69.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds