Wall clock time and date at job start Wed Apr 1 2020 02:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00031 * 2 1 4 4 H 1.48505 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47152 * 299.99864 * 3 2 1 6 6 H 1.48505 * 109.47028 * 59.99803 * 3 2 1 7 7 C 1.38813 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00587 * 196.93309 * 7 2 1 9 9 N 1.36941 * 120.00092 * 16.93122 * 7 2 1 10 10 C 1.47155 * 120.97883 * 26.20602 * 9 7 2 11 11 C 1.53296 * 108.38177 * 129.48751 * 10 9 7 12 12 O 1.42966 * 109.22052 * 52.30651 * 11 10 9 13 13 C 1.42965 * 114.16271 * 297.41630 * 12 11 10 14 14 H 1.09005 * 109.51026 * 302.65435 * 13 12 11 15 15 C 1.53002 * 109.55178 * 182.53255 * 13 12 11 16 16 N 1.46498 * 109.47320 * 65.22584 * 15 13 12 17 17 C 1.34780 * 120.00466 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99382 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00019 * 180.02562 * 17 16 15 20 20 C 1.53789 * 113.61220 * 277.49279 * 19 17 16 21 21 C 1.53786 * 87.07972 * 270.88732 * 20 19 17 22 22 C 1.50700 * 113.68997 * 220.00879 * 21 20 19 23 23 C 1.38238 * 119.99735 * 37.26247 * 22 21 20 24 24 C 1.38241 * 119.99682 * 179.74510 * 23 22 21 25 25 C 1.38239 * 119.99633 * 0.53088 * 24 23 22 26 26 C 1.38232 * 120.00451 * 359.74522 * 25 24 23 27 27 C 1.38231 * 120.00188 * 217.53585 * 22 21 20 28 28 C 1.53783 * 113.61220 * 179.97438 * 19 17 16 29 29 C 1.47148 * 120.98350 * 206.23499 * 9 7 2 30 30 H 0.96994 * 119.99692 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.68386 * 9.76774 * 10 9 7 32 32 H 1.08995 * 109.71616 * 249.23028 * 10 9 7 33 33 H 1.08997 * 109.51713 * 292.38218 * 11 10 9 34 34 H 1.09004 * 109.51201 * 172.22501 * 11 10 9 35 35 H 1.08996 * 109.47493 * 185.23149 * 15 13 12 36 36 H 1.09005 * 109.46897 * 305.23139 * 15 13 12 37 37 H 0.97008 * 119.99905 * 0.02562 * 16 15 13 38 38 H 1.08993 * 112.85440 * 48.80367 * 19 17 16 39 39 H 1.08997 * 113.61272 * 25.43853 * 20 19 17 40 40 H 1.08999 * 113.61190 * 156.33954 * 20 19 17 41 41 H 1.08997 * 113.61079 * 89.11787 * 21 20 19 42 42 H 1.08000 * 120.00460 * 359.97438 * 23 22 21 43 43 H 1.07993 * 119.99951 * 180.29245 * 24 23 22 44 44 H 1.08001 * 119.99300 * 179.76838 * 25 24 23 45 45 H 1.07993 * 120.00070 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.99740 * 0.02562 * 27 22 21 47 47 H 1.08996 * 113.61444 * 203.66287 * 28 19 17 48 48 H 1.09002 * 113.61458 * 334.56706 * 28 19 17 49 49 H 1.09000 * 109.68089 * 110.79256 * 29 9 7 50 50 H 1.08994 * 109.68449 * 350.23338 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2223 0.2729 9 7 1.3702 -2.3626 -0.3443 10 6 0.1976 -2.3454 -1.2332 11 6 0.4247 -3.3676 -2.3528 12 8 0.7653 -4.6303 -1.7754 13 6 1.9816 -4.6213 -1.0242 14 1 2.8007 -4.2878 -1.6615 15 6 2.2761 -6.0317 -0.5096 16 7 2.5346 -6.9215 -1.6444 17 6 2.8185 -8.2216 -1.4304 18 8 2.8604 -8.6547 -0.2984 19 6 3.0850 -9.1366 -2.5978 20 6 1.8071 -9.6789 -3.2596 21 6 1.8788 -10.8455 -2.2601 22 6 1.5236 -12.1808 -2.8616 23 6 1.9093 -12.4809 -4.1547 24 6 1.5881 -13.7079 -4.7046 25 6 0.8718 -14.6304 -3.9652 26 6 0.4812 -14.3282 -2.6741 27 6 0.8074 -13.1034 -2.1222 28 6 3.3934 -10.5860 -2.1864 29 6 1.8343 -3.6633 0.1635 30 1 -0.4849 0.8400 -0.0004 31 1 0.0771 -1.3510 -1.6629 32 1 -0.6958 -2.6119 -0.6685 33 1 1.2381 -3.0296 -2.9949 34 1 -0.4865 -3.4706 -2.9421 35 1 3.1517 -6.0065 0.1391 36 1 1.4179 -6.3999 0.0526 37 1 2.5015 -6.5750 -2.5498 38 1 3.8026 -8.7219 -3.3055 39 1 0.9371 -9.0372 -3.1201 40 1 1.9479 -9.9832 -4.2967 41 1 1.3563 -10.6507 -1.3235 42 1 2.4647 -11.7583 -4.7341 43 1 1.8934 -13.9442 -5.7132 44 1 0.6176 -15.5876 -4.3962 45 1 -0.0787 -15.0488 -2.0966 46 1 0.5020 -12.8671 -1.1136 47 1 3.9676 -11.1382 -2.9303 48 1 3.8037 -10.6765 -1.1807 49 1 1.1060 -4.0629 0.8692 50 1 2.7976 -3.5417 0.6587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035623412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:38 Heat of formation + Delta-G solvation = -15.432778 kcal Electronic energy + Delta-G solvation = -29311.342529 eV Core-core repulsion = 25304.563923 eV Total energy + Delta-G solvation = -4006.778606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.92775 -39.38821 -38.56721 -37.25207 -34.89090 -34.29669 -31.77585 -31.42080 -31.14502 -30.64789 -27.77196 -26.52770 -25.93520 -25.10306 -23.28990 -23.07493 -22.45038 -21.66362 -20.82686 -19.85997 -18.99138 -17.58941 -17.02587 -16.73604 -16.15812 -15.93598 -15.63494 -15.48488 -15.02297 -14.90457 -14.51552 -14.42161 -14.14273 -13.86365 -13.68135 -13.54446 -13.30153 -13.19720 -12.99561 -12.76319 -12.68993 -12.44026 -12.10912 -11.97081 -11.57603 -11.49574 -11.16182 -11.06032 -10.90153 -10.74139 -10.72707 -10.48491 -10.43684 -10.28264 -10.02361 -9.83850 -9.65085 -9.18527 -9.10312 -8.98198 -8.89936 -8.58249 -6.79462 -5.88018 -3.31727 1.07911 1.13507 2.61153 3.17201 3.31106 3.39249 3.41261 3.48476 4.19442 4.25025 4.36914 4.38018 4.40453 4.63464 4.69845 4.71941 4.78138 4.85473 5.07831 5.14351 5.21988 5.28436 5.29796 5.34954 5.41449 5.45997 5.48803 5.60602 5.70010 5.75242 5.76940 5.83265 5.83866 5.86153 5.99532 6.06923 6.12424 6.21979 6.25117 6.25900 6.33339 6.44068 6.45089 6.52103 6.71934 6.74042 7.06658 7.47934 7.56021 7.67599 7.81805 8.25551 8.29564 9.07628 9.70303 10.26989 11.20135 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030597 B = 0.001737 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.907677 B =16116.916437 C =16374.870011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.130 3.870 16 N -0.717 5.717 17 C 0.528 3.472 18 O -0.542 6.542 19 C -0.140 4.140 20 C -0.117 4.117 21 C -0.075 4.075 22 C -0.065 4.065 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.115 4.115 28 C -0.108 4.108 29 C 0.121 3.879 30 H 0.255 0.745 31 H 0.094 0.906 32 H 0.028 0.972 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.403 0.597 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.030 0.970 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.893 -24.909 -10.802 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.368 5.368 17 C 0.314 3.686 18 O -0.420 6.420 19 C -0.162 4.162 20 C -0.154 4.154 21 C -0.093 4.093 22 C -0.065 4.065 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.133 4.133 28 C -0.145 4.145 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.238 0.762 38 H 0.120 0.880 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.107 0.893 48 H 0.103 0.897 49 H 0.048 0.952 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.704 -25.189 -9.969 27.342 hybrid contribution 0.398 1.413 -0.415 1.525 sum 4.102 -23.776 -10.384 26.267 Atomic orbital electron populations 1.70041 1.05287 1.25589 1.53748 1.25051 0.95350 0.98505 1.00751 0.86184 0.79310 0.83677 0.77363 1.20202 1.21470 1.21604 1.19245 0.92676 0.84439 1.42108 0.91274 1.44076 1.33568 1.00998 1.53115 1.21447 0.89130 0.98322 0.89768 1.23324 0.99003 0.84894 0.96572 1.87789 1.41202 1.32602 1.69292 1.22798 0.87513 0.93858 0.95288 0.92387 1.21420 1.01567 0.87931 0.88459 1.45931 1.70980 1.09058 1.10824 1.20030 0.76363 0.82243 0.89994 1.90689 1.51682 1.75624 1.23998 1.22399 1.00566 0.96086 0.97110 1.23013 0.96732 0.96809 0.98869 1.21620 0.97464 0.90908 0.99296 1.19786 0.97175 0.95473 0.94055 1.21022 1.00585 0.96923 0.95081 1.21133 0.98825 0.93982 0.99819 1.21138 0.99171 0.99517 0.94831 1.21157 1.00028 0.96885 0.95617 1.21129 0.98495 0.93743 0.99982 1.22876 0.95408 0.92976 1.03261 1.21443 0.98945 0.87240 0.92960 0.93521 0.88763 0.95367 0.94111 0.90047 0.90165 0.90718 0.76247 0.88005 0.90459 0.88733 0.87920 0.85985 0.86211 0.86336 0.86191 0.86035 0.89339 0.89677 0.95241 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.14 55.49 0.62 -25.13 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.86 9.65 -15.06 -0.15 -7.01 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.40 16 9 N -0.59 -14.64 3.05 -171.83 -0.52 -15.17 16 10 C 0.14 3.26 5.44 -3.53 -0.02 3.24 16 11 C 0.04 0.75 6.98 37.31 0.26 1.01 16 12 O -0.39 -7.09 10.34 -35.23 -0.36 -7.46 16 13 C 0.07 1.11 2.81 -26.58 -0.07 1.04 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.92 5.35 -4.04 -0.02 1.90 16 16 N -0.72 -9.03 5.51 -60.29 -0.33 -9.37 16 17 C 0.53 6.77 7.08 -10.99 -0.08 6.70 16 18 O -0.54 -8.90 15.75 5.56 0.09 -8.81 16 19 C -0.14 -1.28 4.34 -90.96 -0.39 -1.67 16 20 C -0.12 -0.97 7.04 -25.91 -0.18 -1.15 16 21 C -0.07 -0.70 3.63 -90.92 -0.33 -1.03 16 22 C -0.06 -0.59 5.29 -104.62 -0.55 -1.14 16 23 C -0.12 -0.94 8.63 -39.58 -0.34 -1.28 16 24 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 27 C -0.12 -1.04 9.71 -39.58 -0.38 -1.42 16 28 C -0.11 -0.97 6.92 -25.88 -0.18 -1.15 16 29 C 0.12 2.49 6.02 -3.54 -0.02 2.47 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.09 2.42 6.14 -51.93 -0.32 2.11 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 4.39 8.47 -40.82 -0.35 4.04 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 40 H 0.09 0.62 6.31 -51.93 -0.33 0.29 16 41 H 0.10 1.15 8.02 -51.93 -0.42 0.73 16 42 H 0.12 0.77 6.65 -52.49 -0.35 0.42 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.12 1.00 8.05 -52.48 -0.42 0.58 16 47 H 0.09 0.65 7.73 -51.93 -0.40 0.25 16 48 H 0.08 0.92 7.43 -51.93 -0.39 0.54 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -31.73 401.03 -11.25 -42.98 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.00 Total: 4.27 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.74 Total: -3.55 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.24 Total: -49.66 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.28 Total: -16.27 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.73 -11.25 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035623412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.545 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds