Wall clock time and date at job start Wed Apr 1 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00031 * 2 1 4 4 H 1.48505 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47152 * 299.99864 * 3 2 1 6 6 H 1.48505 * 109.47028 * 59.99803 * 3 2 1 7 7 C 1.38813 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00587 * 196.93309 * 7 2 1 9 9 N 1.36941 * 120.00092 * 16.93122 * 7 2 1 10 10 C 1.47155 * 120.97883 * 26.20602 * 9 7 2 11 11 C 1.53296 * 108.38177 * 129.48751 * 10 9 7 12 12 O 1.42966 * 109.22052 * 52.30651 * 11 10 9 13 13 C 1.42965 * 114.16271 * 297.41630 * 12 11 10 14 14 H 1.09005 * 109.51026 * 302.65435 * 13 12 11 15 15 C 1.53002 * 109.55178 * 182.53255 * 13 12 11 16 16 N 1.46498 * 109.47320 * 65.22584 * 15 13 12 17 17 C 1.34780 * 120.00466 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99382 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00019 * 180.02562 * 17 16 15 20 20 C 1.53789 * 113.61220 * 277.49279 * 19 17 16 21 21 C 1.53786 * 87.07972 * 270.88732 * 20 19 17 22 22 C 1.50700 * 113.68997 * 220.00879 * 21 20 19 23 23 C 1.38238 * 119.99735 * 37.26247 * 22 21 20 24 24 C 1.38241 * 119.99682 * 179.74510 * 23 22 21 25 25 C 1.38239 * 119.99633 * 0.53088 * 24 23 22 26 26 C 1.38232 * 120.00451 * 359.74522 * 25 24 23 27 27 C 1.38231 * 120.00188 * 217.53585 * 22 21 20 28 28 C 1.53783 * 113.61220 * 179.97438 * 19 17 16 29 29 C 1.47148 * 120.98350 * 206.23499 * 9 7 2 30 30 H 0.96994 * 119.99692 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.68386 * 9.76774 * 10 9 7 32 32 H 1.08995 * 109.71616 * 249.23028 * 10 9 7 33 33 H 1.08997 * 109.51713 * 292.38218 * 11 10 9 34 34 H 1.09004 * 109.51201 * 172.22501 * 11 10 9 35 35 H 1.08996 * 109.47493 * 185.23149 * 15 13 12 36 36 H 1.09005 * 109.46897 * 305.23139 * 15 13 12 37 37 H 0.97008 * 119.99905 * 0.02562 * 16 15 13 38 38 H 1.08993 * 112.85440 * 48.80367 * 19 17 16 39 39 H 1.08997 * 113.61272 * 25.43853 * 20 19 17 40 40 H 1.08999 * 113.61190 * 156.33954 * 20 19 17 41 41 H 1.08997 * 113.61079 * 89.11787 * 21 20 19 42 42 H 1.08000 * 120.00460 * 359.97438 * 23 22 21 43 43 H 1.07993 * 119.99951 * 180.29245 * 24 23 22 44 44 H 1.08001 * 119.99300 * 179.76838 * 25 24 23 45 45 H 1.07993 * 120.00070 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.99740 * 0.02562 * 27 22 21 47 47 H 1.08996 * 113.61444 * 203.66287 * 28 19 17 48 48 H 1.09002 * 113.61458 * 334.56706 * 28 19 17 49 49 H 1.09000 * 109.68089 * 110.79256 * 29 9 7 50 50 H 1.08994 * 109.68449 * 350.23338 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2223 0.2729 9 7 1.3702 -2.3626 -0.3443 10 6 0.1976 -2.3454 -1.2332 11 6 0.4247 -3.3676 -2.3528 12 8 0.7653 -4.6303 -1.7754 13 6 1.9816 -4.6213 -1.0242 14 1 2.8007 -4.2878 -1.6615 15 6 2.2761 -6.0317 -0.5096 16 7 2.5346 -6.9215 -1.6444 17 6 2.8185 -8.2216 -1.4304 18 8 2.8604 -8.6547 -0.2984 19 6 3.0850 -9.1366 -2.5978 20 6 1.8071 -9.6789 -3.2596 21 6 1.8788 -10.8455 -2.2601 22 6 1.5236 -12.1808 -2.8616 23 6 1.9093 -12.4809 -4.1547 24 6 1.5881 -13.7079 -4.7046 25 6 0.8718 -14.6304 -3.9652 26 6 0.4812 -14.3282 -2.6741 27 6 0.8074 -13.1034 -2.1222 28 6 3.3934 -10.5860 -2.1864 29 6 1.8343 -3.6633 0.1635 30 1 -0.4849 0.8400 -0.0004 31 1 0.0771 -1.3510 -1.6629 32 1 -0.6958 -2.6119 -0.6685 33 1 1.2381 -3.0296 -2.9949 34 1 -0.4865 -3.4706 -2.9421 35 1 3.1517 -6.0065 0.1391 36 1 1.4179 -6.3999 0.0526 37 1 2.5015 -6.5750 -2.5498 38 1 3.8026 -8.7219 -3.3055 39 1 0.9371 -9.0372 -3.1201 40 1 1.9479 -9.9832 -4.2967 41 1 1.3563 -10.6507 -1.3235 42 1 2.4647 -11.7583 -4.7341 43 1 1.8934 -13.9442 -5.7132 44 1 0.6176 -15.5876 -4.3962 45 1 -0.0787 -15.0488 -2.0966 46 1 0.5020 -12.8671 -1.1136 47 1 3.9676 -11.1382 -2.9303 48 1 3.8037 -10.6765 -1.1807 49 1 1.1060 -4.0629 0.8692 50 1 2.7976 -3.5417 0.6587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035623412.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:37 Heat of formation + Delta-G solvation = -33.995704 kcal Electronic energy + Delta-G solvation = -29312.147477 eV Core-core repulsion = 25304.563923 eV Total energy + Delta-G solvation = -4007.583555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.75830 -40.38795 -39.85363 -38.09423 -36.49127 -35.74320 -33.39233 -32.52868 -31.98308 -31.69959 -29.34853 -27.81494 -26.62968 -26.31154 -24.98194 -23.96377 -23.37572 -22.78943 -21.80137 -21.33086 -19.96595 -18.88306 -18.24931 -17.67208 -17.48434 -17.16459 -16.84597 -16.41069 -16.24884 -16.09709 -15.73947 -15.54854 -15.43232 -15.06462 -14.91229 -14.73694 -14.53755 -14.24582 -14.14230 -13.89175 -13.67296 -13.32985 -13.22233 -13.02845 -12.81268 -12.70379 -12.63922 -12.51813 -12.18626 -12.11928 -12.05996 -11.88399 -11.71506 -11.44741 -11.34902 -11.14678 -10.84749 -10.78390 -10.54934 -10.10722 -9.76675 -9.50223 -8.77228 -7.92718 -5.40226 0.48882 0.55175 1.45403 1.47305 1.57968 1.61292 2.14195 2.47400 2.76992 2.89555 3.22519 3.47530 3.53185 3.62153 3.68242 3.93944 3.98901 3.99833 4.07499 4.09797 4.21271 4.25306 4.33793 4.40736 4.48190 4.51370 4.60884 4.63292 4.69993 4.70690 4.72019 4.76972 4.80255 4.88917 4.95106 5.04838 5.06880 5.10700 5.17615 5.23184 5.24558 5.40501 5.41221 5.54371 5.60233 5.64287 5.68224 5.81304 6.18057 6.24477 6.31929 6.57490 7.04739 7.25849 7.72662 8.26225 9.13490 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030597 B = 0.001737 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.907677 B =16116.916437 C =16374.870011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.612 5.612 10 C 0.142 3.858 11 C 0.055 3.945 12 O -0.389 6.389 13 C 0.081 3.919 14 H 0.072 0.928 15 C 0.141 3.859 16 N -0.710 5.710 17 C 0.525 3.475 18 O -0.584 6.584 19 C -0.133 4.133 20 C -0.105 4.105 21 C -0.079 4.079 22 C -0.077 4.077 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.139 4.139 28 C -0.103 4.103 29 C 0.116 3.884 30 H 0.252 0.748 31 H 0.068 0.932 32 H -0.003 1.003 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.415 0.585 38 H 0.135 0.865 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.132 0.868 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.060 0.940 49 H 0.015 0.985 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.548 -26.104 -13.654 29.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.308 6.308 13 C 0.021 3.979 14 H 0.089 0.911 15 C 0.016 3.984 16 N -0.361 5.361 17 C 0.312 3.688 18 O -0.464 6.464 19 C -0.154 4.154 20 C -0.143 4.143 21 C -0.097 4.097 22 C -0.077 4.077 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.153 4.153 26 C -0.147 4.147 27 C -0.157 4.157 28 C -0.141 4.141 29 C -0.011 4.011 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.015 0.985 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.252 0.748 38 H 0.153 0.847 39 H 0.085 0.915 40 H 0.141 0.859 41 H 0.091 0.909 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.079 0.921 49 H 0.033 0.967 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.374 -26.409 -12.848 29.856 hybrid contribution -0.150 1.705 0.557 1.800 sum 5.224 -24.703 -12.291 28.082 Atomic orbital electron populations 1.70198 1.06773 1.26029 1.55238 1.25837 0.96093 1.01661 1.01007 0.85147 0.78628 0.79460 0.76819 1.18882 1.21348 1.22129 1.19599 0.93055 0.85519 1.41394 0.90903 1.44351 1.33652 1.01856 1.53803 1.21325 0.87870 0.98487 0.90677 1.23156 1.00800 0.83555 0.94781 1.87807 1.41804 1.32029 1.69196 1.22626 0.87456 0.94107 0.93679 0.91063 1.21149 1.01146 0.87007 0.89098 1.45821 1.70667 1.08882 1.10731 1.20727 0.75148 0.82335 0.90563 1.90678 1.53406 1.76281 1.26069 1.22376 1.01809 0.95221 0.95999 1.23034 0.95732 0.95617 0.99873 1.21526 0.97578 0.91992 0.98599 1.19828 0.97850 0.95174 0.94847 1.21258 1.00496 0.97687 0.94527 1.21480 0.98194 0.93646 1.00838 1.21464 0.98785 1.00518 0.94548 1.21383 1.00223 0.96756 0.96321 1.21273 0.99560 0.94707 1.00162 1.22895 0.95206 0.93300 1.02666 1.21609 0.98686 0.86383 0.94406 0.93924 0.91387 0.98483 0.92875 0.87342 0.89600 0.92433 0.74842 0.84732 0.91529 0.85927 0.90902 0.83916 0.83889 0.84351 0.84963 0.86710 0.86865 0.92101 0.96701 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.78 11.14 21.65 0.24 -54.54 16 2 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 3 Si 0.97 43.86 29.59 68.60 2.03 45.89 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 7 C -0.27 -14.35 9.65 84.03 0.81 -13.54 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 9 N -0.61 -30.46 3.05 -697.55 -2.13 -32.59 16 10 C 0.14 6.77 5.44 86.35 0.47 7.24 16 11 C 0.05 1.97 6.98 72.08 0.50 2.47 16 12 O -0.39 -13.55 10.34 -148.98 -1.54 -15.09 16 13 C 0.08 2.64 2.81 30.69 0.09 2.73 16 14 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 15 C 0.14 4.04 5.35 86.38 0.46 4.50 16 16 N -0.71 -16.66 5.51 -463.06 -2.55 -19.21 16 17 C 0.52 12.92 7.08 87.66 0.62 13.54 16 18 O -0.58 -19.43 15.75 -3.03 -0.05 -19.48 16 19 C -0.13 -2.11 4.34 -11.01 -0.05 -2.15 16 20 C -0.11 -1.50 7.04 31.13 0.22 -1.29 16 21 C -0.08 -1.44 3.63 -10.99 -0.04 -1.48 16 22 C -0.08 -1.32 5.29 -19.87 -0.11 -1.43 16 23 C -0.12 -1.62 8.63 22.27 0.19 -1.43 16 24 C -0.12 -1.50 10.05 22.27 0.22 -1.28 16 25 C -0.14 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 27 C -0.14 -2.54 9.71 22.27 0.22 -2.32 16 28 C -0.10 -1.72 6.92 31.14 0.22 -1.50 16 29 C 0.12 4.75 6.02 86.35 0.52 5.27 16 30 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.07 3.59 6.14 -2.39 -0.01 3.57 16 32 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.42 7.84 8.47 -92.70 -0.79 7.05 16 38 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 40 H 0.12 1.10 6.31 -2.39 -0.02 1.09 16 41 H 0.07 1.74 8.02 -2.39 -0.02 1.72 16 42 H 0.14 1.21 6.65 -2.91 -0.02 1.19 16 43 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 44 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 45 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.11 2.09 8.05 -2.91 -0.02 2.07 16 47 H 0.11 1.33 7.73 -2.39 -0.02 1.31 16 48 H 0.06 1.33 7.43 -2.39 -0.02 1.31 16 49 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 Total: -1.00 -70.76 401.03 1.37 -69.39 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.15 Total: 21.94 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.21 Total: 3.68 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -4.44 Total: -106.34 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.59 Total: -34.57 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.76 1.37 -69.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035623412.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.396 kcal (2) G-P(sol) polarization free energy of solvation -70.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds