Wall clock time and date at job start Wed Apr 1 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48503 * 109.47189 * 274.80780 * 3 2 1 5 5 H 1.48501 * 109.47366 * 34.81114 * 3 2 1 6 6 H 1.48506 * 109.47024 * 154.80823 * 3 2 1 7 7 C 1.38817 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 187.60764 * 7 2 1 9 9 N 1.36940 * 120.00046 * 7.61450 * 7 2 1 10 10 C 1.47578 * 134.49254 * 7.04785 * 9 7 2 11 11 C 1.53943 * 86.11792 * 155.36285 * 10 9 7 12 12 C 1.47578 * 134.49003 * 187.05800 * 9 7 2 13 13 H 1.08996 * 113.87334 * 90.32427 * 12 9 7 14 14 C 1.53004 * 113.76794 * 318.92890 * 12 9 7 15 15 N 1.46501 * 109.46725 * 78.51253 * 14 12 9 16 16 C 1.34777 * 120.00272 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99850 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00097 * 180.02562 * 16 15 14 19 19 H 1.08997 * 110.33465 * 54.20198 * 18 16 15 20 20 C 1.54478 * 110.46601 * 291.88882 * 18 16 15 21 21 C 1.54509 * 104.06479 * 217.14528 * 20 18 16 22 22 C 1.54481 * 104.06094 * 359.97438 * 21 20 18 23 23 H 1.08997 * 110.46498 * 265.09885 * 22 21 20 24 24 C 1.53002 * 110.36908 * 142.81107 * 22 21 20 25 25 C 1.50700 * 109.46690 * 178.16486 * 24 22 21 26 26 C 1.38231 * 120.00022 * 270.20807 * 25 24 22 27 27 C 1.38240 * 120.00087 * 180.21731 * 26 25 24 28 28 C 1.38233 * 119.99852 * 359.53067 * 27 26 25 29 29 C 1.38233 * 120.00063 * 0.27879 * 28 27 26 30 30 C 1.38231 * 120.00098 * 90.00016 * 25 24 22 31 31 O 1.44420 * 110.37057 * 176.45577 * 18 16 15 32 32 H 0.97006 * 119.99729 * 0.02562 * 1 2 3 33 33 H 1.09001 * 113.76951 * 41.06126 * 10 9 7 34 34 H 1.09000 * 113.76923 * 269.66737 * 10 9 7 35 35 H 1.09001 * 113.74346 * 269.26722 * 11 10 9 36 36 H 1.08999 * 113.74144 * 137.95233 * 11 10 9 37 37 H 1.08988 * 109.47527 * 318.51580 * 14 12 9 38 38 H 1.08993 * 109.47298 * 198.50525 * 14 12 9 39 39 H 0.97008 * 119.99937 * 0.02562 * 15 14 12 40 40 H 1.09009 * 110.51348 * 335.78893 * 20 18 16 41 41 H 1.09004 * 110.51381 * 98.35999 * 20 18 16 42 42 H 1.08998 * 110.50908 * 241.35243 * 21 20 18 43 43 H 1.09000 * 110.51294 * 118.64319 * 21 20 18 44 44 H 1.08994 * 109.47113 * 58.17046 * 24 22 21 45 45 H 1.09004 * 109.47127 * 298.16137 * 24 22 21 46 46 H 1.08000 * 120.00290 * 0.02562 * 26 25 24 47 47 H 1.07996 * 120.00457 * 179.81281 * 27 26 25 48 48 H 1.08001 * 120.00619 * 180.25550 * 28 27 26 49 49 H 1.08003 * 120.00319 * 179.97438 * 29 28 27 50 50 H 1.08001 * 120.00088 * 0.02562 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3961 2.1050 -1.3952 5 1 1.5023 2.6212 0.7993 6 1 3.5949 1.4128 0.5960 7 6 2.0102 -1.2022 0.0005 8 1 3.0830 -1.2063 0.1244 9 7 1.3345 -2.3830 -0.1561 10 6 -0.0618 -2.7415 -0.4719 11 6 0.5095 -4.0681 -1.0045 12 6 1.7101 -3.8079 -0.0767 13 1 1.5980 -4.2389 0.9181 14 6 3.0635 -4.1254 -0.7159 15 7 4.1392 -3.7340 0.1984 16 6 5.4261 -3.9215 -0.1555 17 8 5.6936 -4.4139 -1.2311 18 6 6.5325 -3.5193 0.7853 19 1 6.3888 -3.9852 1.7602 20 6 6.5890 -1.9821 0.9270 21 6 8.0991 -1.6688 1.0202 22 6 8.7764 -3.0540 0.9245 23 1 8.9782 -3.4491 1.9201 24 6 10.0728 -2.9582 0.1176 25 6 10.7389 -4.3094 0.0751 26 6 11.6437 -4.6651 1.0578 27 6 12.2581 -5.9028 1.0163 28 6 11.9603 -6.7885 -0.0024 29 6 11.0525 -6.4343 -0.9828 30 6 10.4418 -5.1947 -0.9441 31 8 7.8170 -3.8867 0.2369 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5124 -2.1162 -1.2426 34 1 -0.6952 -2.8576 0.4076 35 1 0.7608 -4.0434 -2.0649 36 1 -0.0789 -4.9425 -0.7262 37 1 3.1623 -3.5735 -1.6505 38 1 3.1286 -5.1947 -0.9167 39 1 3.9252 -3.3405 1.0588 40 1 6.1526 -1.5015 0.0513 41 1 6.0739 -1.6629 1.8331 42 1 8.3326 -1.1949 1.9736 43 1 8.4093 -1.0334 0.1907 44 1 10.7417 -2.2381 0.5888 45 1 9.8457 -2.6330 -0.8977 46 1 11.8730 -3.9749 1.8562 47 1 12.9672 -6.1796 1.7823 48 1 12.4371 -7.7570 -0.0326 49 1 10.8201 -7.1261 -1.7790 50 1 9.7326 -4.9179 -1.7102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038520256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:55 Heat of formation + Delta-G solvation = -8.720833 kcal Electronic energy + Delta-G solvation = -29947.975605 eV Core-core repulsion = 25941.488051 eV Total energy + Delta-G solvation = -4006.487554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.33059 -39.34522 -38.51457 -37.69710 -34.09324 -33.62745 -32.29493 -32.08172 -30.98368 -30.05240 -28.09258 -27.75695 -26.01545 -23.40194 -23.22496 -22.66785 -21.97011 -21.50722 -20.95186 -20.14536 -19.11800 -17.42789 -16.97896 -16.58181 -16.43605 -16.25597 -15.41532 -15.31980 -15.16109 -14.77181 -14.65540 -14.33142 -13.95962 -13.76377 -13.58961 -13.50445 -13.36406 -13.09582 -12.98372 -12.48078 -12.31390 -12.00471 -11.82290 -11.69655 -11.54916 -11.42331 -11.18097 -11.08881 -11.07396 -10.85718 -10.82662 -10.79673 -10.54804 -10.09776 -9.99358 -9.77681 -9.57593 -9.23624 -9.01992 -8.80333 -8.79958 -8.59905 -6.93435 -5.82311 -3.13083 1.22680 1.30863 2.88562 3.12538 3.33795 3.38522 3.41616 3.65490 4.00920 4.38756 4.44720 4.49452 4.70516 4.75232 4.76790 4.87727 4.94909 5.00481 5.04047 5.10875 5.15983 5.26829 5.35697 5.38242 5.42021 5.44096 5.55974 5.58345 5.66541 5.69479 5.73503 5.89177 5.90047 5.94432 5.97285 5.98632 6.07659 6.28487 6.33359 6.37839 6.41787 6.51264 6.58701 6.68821 6.71255 6.88668 6.90999 7.18862 7.37917 7.51725 7.86417 7.93307 8.54272 8.99786 9.66812 10.56643 11.35717 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.002498 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.803741 B =11207.396426 C =12590.607980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.165 3.835 11 C -0.157 4.157 12 C 0.125 3.875 13 H 0.049 0.951 14 C 0.125 3.875 15 N -0.711 5.711 16 C 0.516 3.484 17 O -0.531 6.531 18 C 0.059 3.941 19 H 0.090 0.910 20 C -0.145 4.145 21 C -0.148 4.148 22 C 0.078 3.922 23 H 0.071 0.929 24 C -0.075 4.075 25 C -0.079 4.079 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.126 4.126 29 C -0.120 4.120 30 C -0.096 4.096 31 O -0.335 6.335 32 H 0.253 0.747 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.403 0.597 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.590 -9.306 4.222 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.040 3.960 11 C -0.196 4.196 12 C 0.018 3.982 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.363 5.363 16 C 0.300 3.700 17 O -0.408 6.408 18 C -0.002 4.002 19 H 0.107 0.893 20 C -0.184 4.184 21 C -0.186 4.186 22 C 0.020 3.980 23 H 0.089 0.911 24 C -0.112 4.112 25 C -0.079 4.079 26 C -0.139 4.139 27 C -0.143 4.143 28 C -0.144 4.144 29 C -0.139 4.139 30 C -0.114 4.114 31 O -0.253 6.253 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 19.843 -9.466 3.294 22.231 hybrid contribution 0.179 1.310 0.813 1.552 sum 20.022 -8.156 4.107 22.006 Atomic orbital electron populations 1.69844 1.05002 1.25326 1.56277 1.24796 0.95575 0.97520 1.02455 0.86204 0.78621 0.83903 0.77610 1.21622 1.21783 1.20629 1.18949 0.90513 0.82079 1.43250 0.90339 1.46176 1.06189 0.98580 1.81846 1.22066 0.87745 0.89458 0.96713 1.23775 0.97267 0.99053 0.99477 1.22495 0.91632 0.87828 0.96284 0.93336 1.21757 0.85692 0.98849 0.93599 1.45874 1.05036 1.63484 1.21926 1.20079 0.83476 0.78972 0.87445 1.90688 1.83399 1.43485 1.23184 1.22811 0.85450 0.95668 0.96295 0.89271 1.22910 0.97060 0.93898 1.04490 1.22996 0.94703 0.97568 1.03333 1.23032 0.89538 0.89857 0.95602 0.91110 1.20700 0.94305 0.94198 1.02025 1.19783 0.96711 0.96212 0.95225 1.21020 0.97410 0.96925 0.98504 1.21075 1.00274 0.94266 0.98673 1.21127 0.98671 0.99441 0.95207 1.21185 0.97004 0.96707 0.98956 1.21156 0.98342 0.93511 0.98379 1.89295 1.13775 1.60280 1.61961 0.93667 0.92139 0.95004 0.90506 0.92664 0.91005 0.92132 0.76296 0.89665 0.89340 0.90118 0.90142 0.89506 0.89801 0.86340 0.86379 0.86426 0.86185 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 11.76 55.49 0.65 -25.92 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.52 29.56 -169.99 -5.02 16.49 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.22 -5.75 10.49 -15.06 -0.16 -5.91 16 8 H 0.08 1.96 7.80 -52.49 -0.41 1.55 16 9 N -0.60 -14.34 3.56 -170.75 -0.61 -14.95 16 10 C 0.17 3.73 7.31 -2.98 -0.02 3.71 16 11 C -0.16 -2.80 7.86 -25.80 -0.20 -3.00 16 12 C 0.13 2.35 4.33 -66.86 -0.29 2.06 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.13 2.24 5.54 -4.04 -0.02 2.22 16 15 N -0.71 -11.80 5.51 -60.30 -0.33 -12.13 16 16 C 0.52 8.89 7.08 -10.98 -0.08 8.81 16 17 O -0.53 -11.22 16.56 -13.63 -0.23 -11.44 16 18 C 0.06 0.81 3.70 -27.11 -0.10 0.71 16 19 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.15 -1.79 6.62 -25.16 -0.17 -1.95 16 21 C -0.15 -1.48 6.63 -25.16 -0.17 -1.64 16 22 C 0.08 0.83 3.26 -25.95 -0.08 0.75 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 C -0.08 -0.72 4.99 -27.88 -0.14 -0.86 16 25 C -0.08 -0.85 5.00 -104.63 -0.52 -1.38 16 26 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 27 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 28 C -0.13 -1.20 10.05 -39.59 -0.40 -1.60 16 29 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 30 C -0.10 -1.13 9.50 -39.58 -0.38 -1.51 16 31 O -0.34 -4.90 10.25 -54.42 -0.56 -5.46 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.06 1.50 7.69 -51.93 -0.40 1.10 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.47 8.14 -51.94 -0.42 1.05 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.40 6.20 8.47 -40.82 -0.35 5.85 16 40 H 0.08 1.24 7.87 -51.92 -0.41 0.83 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 44 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 45 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 50 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 412.03 15.07 6.21 6.21 Total: -1.00 -33.15 412.03 -12.18 -45.33 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.29 Total: 6.48 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -4.00 Total: -4.61 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.29 Total: -53.01 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.78 Total: -16.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.15 -12.18 -45.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038520256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.609 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds