Wall clock time and date at job start Wed Apr 1 2020 03:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48503 * 109.47189 * 274.80780 * 3 2 1 5 5 H 1.48501 * 109.47366 * 34.81114 * 3 2 1 6 6 H 1.48506 * 109.47024 * 154.80823 * 3 2 1 7 7 C 1.38817 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 187.60764 * 7 2 1 9 9 N 1.36940 * 120.00046 * 7.61450 * 7 2 1 10 10 C 1.47578 * 134.49254 * 7.04785 * 9 7 2 11 11 C 1.53943 * 86.11792 * 155.36285 * 10 9 7 12 12 C 1.47578 * 134.49003 * 187.05800 * 9 7 2 13 13 H 1.08996 * 113.87334 * 90.32427 * 12 9 7 14 14 C 1.53004 * 113.76794 * 318.92890 * 12 9 7 15 15 N 1.46501 * 109.46725 * 78.51253 * 14 12 9 16 16 C 1.34777 * 120.00272 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99850 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00097 * 180.02562 * 16 15 14 19 19 H 1.08997 * 110.33465 * 54.20198 * 18 16 15 20 20 C 1.54478 * 110.46601 * 291.88882 * 18 16 15 21 21 C 1.54509 * 104.06479 * 217.14528 * 20 18 16 22 22 C 1.54481 * 104.06094 * 359.97438 * 21 20 18 23 23 H 1.08997 * 110.46498 * 265.09885 * 22 21 20 24 24 C 1.53002 * 110.36908 * 142.81107 * 22 21 20 25 25 C 1.50700 * 109.46690 * 178.16486 * 24 22 21 26 26 C 1.38231 * 120.00022 * 270.20807 * 25 24 22 27 27 C 1.38240 * 120.00087 * 180.21731 * 26 25 24 28 28 C 1.38233 * 119.99852 * 359.53067 * 27 26 25 29 29 C 1.38233 * 120.00063 * 0.27879 * 28 27 26 30 30 C 1.38231 * 120.00098 * 90.00016 * 25 24 22 31 31 O 1.44420 * 110.37057 * 176.45577 * 18 16 15 32 32 H 0.97006 * 119.99729 * 0.02562 * 1 2 3 33 33 H 1.09001 * 113.76951 * 41.06126 * 10 9 7 34 34 H 1.09000 * 113.76923 * 269.66737 * 10 9 7 35 35 H 1.09001 * 113.74346 * 269.26722 * 11 10 9 36 36 H 1.08999 * 113.74144 * 137.95233 * 11 10 9 37 37 H 1.08988 * 109.47527 * 318.51580 * 14 12 9 38 38 H 1.08993 * 109.47298 * 198.50525 * 14 12 9 39 39 H 0.97008 * 119.99937 * 0.02562 * 15 14 12 40 40 H 1.09009 * 110.51348 * 335.78893 * 20 18 16 41 41 H 1.09004 * 110.51381 * 98.35999 * 20 18 16 42 42 H 1.08998 * 110.50908 * 241.35243 * 21 20 18 43 43 H 1.09000 * 110.51294 * 118.64319 * 21 20 18 44 44 H 1.08994 * 109.47113 * 58.17046 * 24 22 21 45 45 H 1.09004 * 109.47127 * 298.16137 * 24 22 21 46 46 H 1.08000 * 120.00290 * 0.02562 * 26 25 24 47 47 H 1.07996 * 120.00457 * 179.81281 * 27 26 25 48 48 H 1.08001 * 120.00619 * 180.25550 * 28 27 26 49 49 H 1.08003 * 120.00319 * 179.97438 * 29 28 27 50 50 H 1.08001 * 120.00088 * 0.02562 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3961 2.1050 -1.3952 5 1 1.5023 2.6212 0.7993 6 1 3.5949 1.4128 0.5960 7 6 2.0102 -1.2022 0.0005 8 1 3.0830 -1.2063 0.1244 9 7 1.3345 -2.3830 -0.1561 10 6 -0.0618 -2.7415 -0.4719 11 6 0.5095 -4.0681 -1.0045 12 6 1.7101 -3.8079 -0.0767 13 1 1.5980 -4.2389 0.9181 14 6 3.0635 -4.1254 -0.7159 15 7 4.1392 -3.7340 0.1984 16 6 5.4261 -3.9215 -0.1555 17 8 5.6936 -4.4139 -1.2311 18 6 6.5325 -3.5193 0.7853 19 1 6.3888 -3.9852 1.7602 20 6 6.5890 -1.9821 0.9270 21 6 8.0991 -1.6688 1.0202 22 6 8.7764 -3.0540 0.9245 23 1 8.9782 -3.4491 1.9201 24 6 10.0728 -2.9582 0.1176 25 6 10.7389 -4.3094 0.0751 26 6 11.6437 -4.6651 1.0578 27 6 12.2581 -5.9028 1.0163 28 6 11.9603 -6.7885 -0.0024 29 6 11.0525 -6.4343 -0.9828 30 6 10.4418 -5.1947 -0.9441 31 8 7.8170 -3.8867 0.2369 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5124 -2.1162 -1.2426 34 1 -0.6952 -2.8576 0.4076 35 1 0.7608 -4.0434 -2.0649 36 1 -0.0789 -4.9425 -0.7262 37 1 3.1623 -3.5735 -1.6505 38 1 3.1286 -5.1947 -0.9167 39 1 3.9252 -3.3405 1.0588 40 1 6.1526 -1.5015 0.0513 41 1 6.0739 -1.6629 1.8331 42 1 8.3326 -1.1949 1.9736 43 1 8.4093 -1.0334 0.1907 44 1 10.7417 -2.2381 0.5888 45 1 9.8457 -2.6330 -0.8977 46 1 11.8730 -3.9749 1.8562 47 1 12.9672 -6.1796 1.7823 48 1 12.4371 -7.7570 -0.0326 49 1 10.8201 -7.1261 -1.7790 50 1 9.7326 -4.9179 -1.7102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038520256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:54 Heat of formation + Delta-G solvation = -27.776446 kcal Electronic energy + Delta-G solvation = -29948.801918 eV Core-core repulsion = 25941.488051 eV Total energy + Delta-G solvation = -4007.313868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.43149 -40.33687 -39.77893 -39.11423 -35.57736 -34.43677 -34.20594 -33.10269 -31.71785 -31.04604 -29.87508 -29.17209 -27.03791 -25.28911 -24.31052 -23.49434 -23.31836 -22.37445 -21.74433 -21.49146 -20.78495 -18.87713 -18.14208 -17.75140 -17.51627 -17.31087 -17.07611 -16.51039 -16.16238 -15.88635 -15.85116 -15.60846 -15.57500 -15.05153 -14.74279 -14.63130 -14.29977 -14.22959 -14.09917 -13.61610 -13.37124 -13.27316 -13.05600 -12.98919 -12.76290 -12.70061 -12.63044 -12.49675 -12.49029 -12.24830 -11.87589 -11.83870 -11.73426 -11.57968 -11.50847 -11.34307 -11.00926 -10.80032 -10.58846 -10.06224 -9.77372 -9.54995 -8.88768 -7.88007 -5.18074 0.48601 0.54896 1.43443 1.46664 1.53541 1.54721 1.92445 2.47856 2.89644 3.00597 3.32419 3.37537 3.50276 3.63556 3.81433 3.87712 3.97445 4.01198 4.09022 4.14238 4.16786 4.20434 4.26045 4.34084 4.35047 4.44175 4.57201 4.63082 4.66192 4.68480 4.71522 4.83184 4.86772 4.90722 4.93555 5.00956 5.05663 5.10070 5.15519 5.21337 5.22449 5.31951 5.42262 5.58678 5.61249 5.66540 5.71233 5.73987 5.86936 5.96347 6.18025 6.53401 6.95642 7.19970 7.66081 8.61546 9.30465 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.002498 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.803741 B =11207.396426 C =12590.607980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.963 3.037 4 H -0.299 1.299 5 H -0.298 1.298 6 H -0.259 1.259 7 C -0.211 4.211 8 H 0.087 0.913 9 N -0.628 5.628 10 C 0.157 3.843 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.071 0.929 14 C 0.134 3.866 15 N -0.706 5.706 16 C 0.512 3.488 17 O -0.578 6.578 18 C 0.063 3.937 19 H 0.119 0.881 20 C -0.145 4.145 21 C -0.141 4.141 22 C 0.075 3.925 23 H 0.089 0.911 24 C -0.073 4.073 25 C -0.090 4.090 26 C -0.123 4.123 27 C -0.127 4.127 28 C -0.133 4.133 29 C -0.136 4.136 30 C -0.123 4.123 31 O -0.366 6.366 32 H 0.245 0.755 33 H 0.026 0.974 34 H 0.024 0.976 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.411 0.589 40 H 0.055 0.945 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.067 0.933 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.139 0.861 49 H 0.125 0.875 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.028 -10.097 6.637 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.793 3.207 4 H -0.226 1.226 5 H -0.225 1.225 6 H -0.183 1.183 7 C -0.340 4.340 8 H 0.105 0.895 9 N -0.355 5.355 10 C 0.032 3.968 11 C -0.171 4.171 12 C 0.027 3.973 13 H 0.089 0.911 14 C 0.009 3.991 15 N -0.357 5.357 16 C 0.298 3.702 17 O -0.457 6.457 18 C 0.002 3.998 19 H 0.137 0.863 20 C -0.183 4.183 21 C -0.179 4.179 22 C 0.018 3.982 23 H 0.106 0.894 24 C -0.110 4.110 25 C -0.090 4.090 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.151 4.151 29 C -0.154 4.154 30 C -0.142 4.142 31 O -0.285 6.285 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.246 0.754 40 H 0.074 0.926 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.134 0.866 45 H 0.085 0.915 46 H 0.163 0.837 47 H 0.163 0.837 48 H 0.157 0.843 49 H 0.143 0.857 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 22.306 -10.280 5.736 25.222 hybrid contribution -0.547 1.446 0.032 1.547 sum 21.759 -8.834 5.768 24.182 Atomic orbital electron populations 1.70014 1.06405 1.25243 1.58812 1.25540 0.96334 1.00620 1.03832 0.85272 0.78455 0.80169 0.76833 1.22647 1.22492 1.18272 1.19323 0.91101 0.83122 1.40452 0.89511 1.46528 1.06986 1.00039 1.81923 1.22034 0.87332 0.91653 0.95796 1.23583 0.96304 0.97836 0.99340 1.22643 0.92369 0.84801 0.97466 0.91144 1.21546 0.85716 0.99384 0.92475 1.45824 1.04833 1.63147 1.21911 1.20796 0.84208 0.77787 0.87366 1.90663 1.84065 1.45645 1.25348 1.22878 0.84102 0.96804 0.96041 0.86338 1.22929 0.98949 0.92487 1.03983 1.23010 0.92639 0.97265 1.04947 1.23255 0.89049 0.89735 0.96135 0.89357 1.20741 0.94442 0.94395 1.01392 1.19957 0.97301 0.96453 0.95332 1.21338 0.96568 0.97597 0.98550 1.21472 1.00202 0.93932 0.98861 1.21431 0.98193 1.00588 0.94844 1.21368 0.97631 0.96545 0.99884 1.21164 0.99143 0.94840 0.99017 1.89293 1.14598 1.61475 1.63174 0.94617 0.95518 0.95771 0.90264 0.88704 0.94012 0.90377 0.75367 0.92611 0.87400 0.87052 0.90357 0.86550 0.91467 0.83722 0.83705 0.84327 0.85694 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.89 11.76 21.65 0.25 -56.64 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.96 44.69 29.56 68.60 2.03 46.71 16 4 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.21 -11.04 10.49 84.03 0.88 -10.16 16 8 H 0.09 4.27 7.80 -2.91 -0.02 4.25 16 9 N -0.63 -29.81 3.56 -694.14 -2.47 -32.28 16 10 C 0.16 7.14 7.31 86.48 0.63 7.77 16 11 C -0.13 -4.48 7.86 31.26 0.25 -4.23 16 12 C 0.13 4.78 4.33 45.10 0.20 4.98 16 13 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 14 C 0.13 4.64 5.54 86.38 0.48 5.12 16 15 N -0.71 -22.63 5.51 -463.07 -2.55 -25.18 16 16 C 0.51 17.45 7.08 87.66 0.62 18.07 16 17 O -0.58 -24.91 16.56 15.32 0.25 -24.66 16 18 C 0.06 1.63 3.70 30.35 0.11 1.74 16 19 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 20 C -0.15 -3.29 6.62 31.61 0.21 -3.08 16 21 C -0.14 -2.42 6.63 31.61 0.21 -2.21 16 22 C 0.08 1.45 3.26 31.10 0.10 1.55 16 23 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 24 C -0.07 -1.29 4.99 29.85 0.15 -1.14 16 25 C -0.09 -1.85 5.00 -19.87 -0.10 -1.95 16 26 C -0.12 -2.00 9.70 22.27 0.22 -1.78 16 27 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 28 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 29 C -0.14 -2.91 10.05 22.27 0.22 -2.69 16 30 C -0.12 -3.02 9.50 22.27 0.21 -2.81 16 31 O -0.37 -10.49 10.25 -130.63 -1.34 -11.83 16 32 H 0.24 14.34 8.31 -92.70 -0.77 13.57 16 33 H 0.03 1.37 7.69 -2.39 -0.02 1.35 16 34 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.41 11.87 8.47 -92.70 -0.79 11.09 16 40 H 0.05 1.59 7.87 -2.38 -0.02 1.57 16 41 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.38 7.87 -2.39 -0.02 1.37 16 44 H 0.12 1.33 8.09 -2.39 -0.02 1.31 16 45 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 46 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 48 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 49 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 50 H 0.10 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -75.21 412.03 1.61 -73.60 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.14 Total: 28.37 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.30 Total: 1.91 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.77 Total: -114.10 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.08 Total: -36.49 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -75.21 1.61 -73.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038520256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.823 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds