Wall clock time and date at job start Wed Apr 1 2020 02:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99695 * 2 1 4 4 H 1.48498 * 109.47670 * 94.02089 * 3 2 1 5 5 H 1.48503 * 109.46846 * 214.02172 * 3 2 1 6 6 H 1.48504 * 109.47132 * 334.01643 * 3 2 1 7 7 C 1.38807 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99910 * 15.91952 * 7 2 1 9 9 N 1.36937 * 120.00207 * 195.91788 * 7 2 1 10 10 C 1.47147 * 120.97962 * 31.30311 * 9 7 2 11 11 C 1.53294 * 108.38478 * 129.44402 * 10 9 7 12 12 O 1.42967 * 109.22454 * 52.30223 * 11 10 9 13 13 C 1.42969 * 114.16198 * 297.41940 * 12 11 10 14 14 C 1.47146 * 120.98097 * 211.02166 * 9 7 2 15 15 H 1.08997 * 109.68410 * 110.83562 * 14 9 7 16 16 C 1.53005 * 109.68400 * 350.27877 * 14 9 7 17 17 N 1.46498 * 109.46752 * 60.59092 * 16 14 9 18 18 C 1.34777 * 119.99861 * 179.97438 * 17 16 14 19 19 O 1.21555 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.47849 * 120.00187 * 179.97438 * 18 17 16 21 21 C 1.39583 * 120.14064 * 359.72413 * 20 18 17 22 22 C 1.37960 * 119.84894 * 179.79111 * 21 20 18 23 23 C 1.38358 * 120.14545 * 0.48640 * 22 21 20 24 24 C 1.50694 * 119.85389 * 179.72269 * 23 22 21 25 25 C 1.53780 * 113.61649 * 39.15729 * 24 23 22 26 26 C 1.53947 * 87.02119 * 220.04817 * 25 24 23 27 27 C 1.53778 * 87.11453 * 25.36286 * 26 25 24 28 28 C 1.38365 * 120.29356 * 359.74654 * 23 22 21 29 29 C 1.37953 * 120.14288 * 0.02562 * 28 23 22 30 30 H 0.97002 * 120.00462 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.68286 * 249.16224 * 10 9 7 32 32 H 1.09001 * 109.68711 * 9.68195 * 10 9 7 33 33 H 1.09000 * 109.51459 * 172.22564 * 11 10 9 34 34 H 1.09001 * 109.51517 * 292.32324 * 11 10 9 35 35 H 1.08993 * 109.50953 * 182.50461 * 13 12 11 36 36 H 1.09005 * 109.51102 * 302.65869 * 13 12 11 37 37 H 1.08998 * 109.47018 * 180.58775 * 16 14 9 38 38 H 1.08995 * 109.46844 * 300.58800 * 16 14 9 39 39 H 0.97005 * 120.00374 * 0.02562 * 17 16 14 40 40 H 1.08002 * 120.07319 * 0.02562 * 21 20 18 41 41 H 1.07996 * 119.92544 * 180.22922 * 22 21 20 42 42 H 1.09005 * 112.85391 * 170.35847 * 24 23 22 43 43 H 1.09001 * 113.61501 * 334.57562 * 25 24 23 44 44 H 1.09003 * 113.61392 * 105.46858 * 25 24 23 45 45 H 1.09001 * 113.54329 * 270.80964 * 26 25 24 46 46 H 1.09000 * 113.74431 * 139.94234 * 26 25 24 47 47 H 1.08996 * 113.61521 * 220.09192 * 27 26 25 48 48 H 1.09001 * 113.69054 * 89.19028 * 27 26 25 49 49 H 1.07997 * 119.93095 * 179.97438 * 28 23 22 50 50 H 1.08000 * 120.07595 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5826 1.9975 1.3966 5 1 3.5025 1.4663 -0.7834 6 1 1.4076 2.6757 -0.6134 7 6 2.0102 -1.2021 0.0005 8 1 1.5013 -2.1196 -0.2556 9 7 3.3402 -1.2247 0.3258 10 6 3.9023 -0.2591 1.2834 11 6 4.7037 -1.0331 2.3363 12 8 5.6381 -1.8924 1.6788 13 6 5.0339 -2.8942 0.8570 14 6 4.2483 -2.2191 -0.2673 15 1 4.9401 -1.7241 -0.9488 16 6 3.4364 -3.2689 -1.0288 17 7 2.6804 -2.6178 -2.1015 18 6 1.8890 -3.3511 -2.9092 19 8 1.8022 -4.5527 -2.7474 20 6 1.1256 -2.6940 -3.9915 21 6 1.2177 -1.3134 -4.1757 22 6 0.5061 -0.7071 -5.1902 23 6 -0.3054 -1.4629 -6.0176 24 6 -1.0846 -0.7928 -7.1197 25 6 -0.3061 0.3252 -7.8329 26 6 -1.6228 1.1227 -7.8476 27 6 -2.0447 0.2993 -6.6193 28 6 -0.4049 -2.8311 -5.8373 29 6 0.3050 -3.4505 -4.8296 30 1 -0.4851 0.8400 -0.0004 31 1 4.5588 0.4366 0.7608 32 1 3.0949 0.2909 1.7670 33 1 5.2411 -0.3308 2.9736 34 1 4.0244 -1.6302 2.9446 35 1 5.8088 -3.5308 0.4301 36 1 4.3558 -3.4988 1.4593 37 1 4.1114 -4.0093 -1.4578 38 1 2.7455 -3.7606 -0.3441 39 1 2.7499 -1.6589 -2.2309 40 1 1.8477 -0.7218 -3.5279 41 1 0.5794 0.3605 -5.3362 42 1 -1.5502 -1.5042 -7.8019 43 1 0.4714 0.7772 -7.2170 44 1 0.0477 0.0463 -8.8255 45 1 -2.2351 0.9359 -8.7298 46 1 -1.4950 2.1848 -7.6383 47 1 -3.0925 -0.0005 -6.6335 48 1 -1.7442 0.7432 -5.6702 49 1 -1.0404 -3.4153 -6.4863 50 1 0.2262 -4.5185 -4.6895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050949382.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:54 Heat of formation + Delta-G solvation = -3.018127 kcal Electronic energy + Delta-G solvation = -30910.989591 eV Core-core repulsion = 26904.749325 eV Total energy + Delta-G solvation = -4006.240266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.16194 -39.31642 -38.59541 -37.16693 -35.46772 -33.70903 -32.03078 -31.38764 -30.76481 -30.55908 -27.60049 -26.39227 -25.71435 -25.01972 -23.46979 -22.65240 -22.44507 -21.86420 -20.00859 -19.82614 -19.11605 -17.77843 -16.74406 -16.26957 -16.10753 -15.84465 -15.43617 -15.18638 -15.06655 -14.65060 -14.47093 -14.21961 -14.06811 -14.02232 -13.66223 -13.36412 -13.15800 -13.09558 -12.60472 -12.59120 -12.53751 -12.22166 -11.92631 -11.91320 -11.76081 -11.53423 -11.17659 -10.99830 -10.80073 -10.63539 -10.56873 -10.52379 -10.38741 -10.28232 -9.85417 -9.67734 -9.54385 -9.24277 -8.74508 -8.72661 -8.53493 -8.21897 -7.05518 -6.07156 -3.52129 1.14087 1.62480 3.17391 3.28125 3.34663 3.36293 3.75688 4.19104 4.27227 4.37073 4.49477 4.54558 4.61662 4.62780 4.89041 4.99946 5.10263 5.14821 5.17833 5.30901 5.41117 5.46237 5.52411 5.57114 5.61303 5.64747 5.67226 5.73115 5.76236 5.81420 5.85423 5.86804 5.88331 5.99318 6.03644 6.07863 6.10718 6.20204 6.22125 6.32391 6.32758 6.47640 6.56834 6.65587 6.70297 6.75292 7.05477 7.13668 7.56879 7.77897 8.18832 8.22951 8.75107 8.83045 9.54266 9.91517 11.06448 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.003416 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.259445 B = 8193.713783 C = 9611.228607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.032 3.968 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.272 1.272 6 H -0.303 1.303 7 C -0.270 4.270 8 H 0.097 0.903 9 N -0.607 5.607 10 C 0.090 3.910 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.128 3.872 15 H 0.046 0.954 16 C 0.137 3.863 17 N -0.689 5.689 18 C 0.555 3.445 19 O -0.561 6.561 20 C -0.125 4.125 21 C -0.068 4.068 22 C -0.125 4.125 23 C -0.054 4.054 24 C -0.075 4.075 25 C -0.134 4.134 26 C -0.144 4.144 27 C -0.132 4.132 28 C -0.131 4.131 29 C -0.061 4.061 30 H 0.264 0.736 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.411 0.589 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.123 0.877 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 0.031 -11.527 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.168 4.168 3 Si 0.709 3.291 4 H -0.213 1.213 5 H -0.197 1.197 6 H -0.231 1.231 7 C -0.398 4.398 8 H 0.115 0.885 9 N -0.334 5.334 10 C -0.036 4.036 11 C -0.032 4.032 12 O -0.306 6.306 13 C -0.025 4.025 14 C 0.021 3.979 15 H 0.064 0.936 16 C 0.012 3.988 17 N -0.340 5.340 18 C 0.342 3.658 19 O -0.442 6.442 20 C -0.128 4.128 21 C -0.087 4.087 22 C -0.143 4.143 23 C -0.054 4.054 24 C -0.093 4.093 25 C -0.172 4.172 26 C -0.181 4.181 27 C -0.169 4.169 28 C -0.149 4.149 29 C -0.080 4.080 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.250 0.750 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.141 0.859 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.949 -0.685 -11.376 11.562 hybrid contribution 0.027 1.603 0.186 1.614 sum 1.976 0.919 -11.190 11.400 Atomic orbital electron populations 1.69792 1.05562 1.26619 1.51943 1.25340 0.95131 0.97321 0.99024 0.87082 0.79484 0.84790 0.77715 1.21321 1.19712 1.23092 1.19024 0.82377 0.94766 1.43628 0.88536 1.44427 1.06081 1.35706 1.47140 1.22088 0.97214 0.92828 0.91425 1.23063 0.92199 0.93251 0.94705 1.87832 1.33379 1.46076 1.63356 1.22836 0.97088 0.90029 0.92515 1.21373 0.92059 0.90865 0.93605 0.93644 1.21153 0.94391 0.94236 0.89000 1.45861 1.45023 1.12227 1.30865 1.18186 0.79394 0.86457 0.81721 1.90694 1.65963 1.14585 1.73000 1.19975 1.00924 0.93983 0.97929 1.21379 0.97665 0.93625 0.96032 1.20866 0.97820 0.99813 0.95785 1.19851 0.96081 0.93532 0.95969 1.21566 0.96647 0.95623 0.95472 1.23066 0.96942 0.96472 1.00674 1.22866 0.97492 0.99248 0.98518 1.23003 0.99168 0.96246 0.98518 1.20922 1.00819 0.94058 0.99093 1.21195 0.93539 1.00348 0.92912 0.92582 0.94899 0.89920 0.89770 0.92990 0.89298 0.92906 0.91944 0.91026 0.75028 0.85332 0.85842 0.88605 0.89558 0.91426 0.90318 0.91374 0.91335 0.89478 0.85933 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 13.97 55.49 0.78 -24.75 16 2 C 0.03 0.85 5.30 -17.43 -0.09 0.76 16 3 Si 0.88 20.56 24.27 -169.99 -4.13 16.43 16 4 H -0.29 -6.54 6.42 56.52 0.36 -6.18 16 5 H -0.27 -6.23 6.79 56.52 0.38 -5.84 16 6 H -0.30 -7.31 7.11 56.52 0.40 -6.90 16 7 C -0.27 -6.72 7.51 -15.06 -0.11 -6.83 16 8 H 0.10 2.66 6.01 -52.48 -0.32 2.35 16 9 N -0.61 -13.11 2.78 -164.55 -0.46 -13.56 16 10 C 0.09 1.83 4.38 -3.54 -0.02 1.82 16 11 C 0.05 0.80 6.98 37.31 0.26 1.06 16 12 O -0.39 -6.87 10.74 -35.23 -0.38 -7.24 16 13 C 0.05 0.88 6.27 37.10 0.23 1.11 16 14 C 0.13 2.33 3.19 -67.64 -0.22 2.11 16 15 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 16 C 0.14 2.49 4.44 -4.04 -0.02 2.47 16 17 N -0.69 -13.26 3.72 -61.25 -0.23 -13.49 16 18 C 0.56 11.11 7.77 -12.33 -0.10 11.02 16 19 O -0.56 -12.48 16.35 5.32 0.09 -12.39 16 20 C -0.13 -2.24 5.87 -104.96 -0.62 -2.85 16 21 C -0.07 -1.14 9.54 -39.18 -0.37 -1.51 16 22 C -0.12 -1.80 8.51 -39.64 -0.34 -2.14 16 23 C -0.05 -0.71 5.30 -104.53 -0.55 -1.26 16 24 C -0.07 -0.77 3.97 -90.96 -0.36 -1.14 16 25 C -0.13 -1.24 7.47 -25.83 -0.19 -1.43 16 26 C -0.14 -1.23 8.09 -25.83 -0.21 -1.44 16 27 C -0.13 -1.35 7.54 -25.92 -0.20 -1.54 16 28 C -0.13 -1.77 9.69 -39.64 -0.38 -2.15 16 29 C -0.06 -0.97 9.60 -39.19 -0.38 -1.35 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.03 0.68 6.89 -51.93 -0.36 0.32 16 32 H 0.08 1.82 4.85 -51.93 -0.25 1.57 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.46 7.57 -51.93 -0.39 1.06 16 39 H 0.41 8.00 5.35 -40.82 -0.22 7.79 16 40 H 0.13 2.17 6.41 -52.49 -0.34 1.83 16 41 H 0.12 1.57 6.70 -52.49 -0.35 1.22 16 42 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.09 0.83 6.38 -51.93 -0.33 0.50 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.09 1.01 7.63 -51.93 -0.40 0.61 16 49 H 0.12 1.32 8.04 -52.49 -0.42 0.90 16 50 H 0.13 2.06 7.65 -52.49 -0.40 1.65 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -30.28 384.85 -9.80 -40.08 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.61 Total: 12.43 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -3.66 Total: -3.30 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.09 Total: -51.80 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.29 Total: -19.63 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.13 Total: 16.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.28 -9.80 -40.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050949382.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.061 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds