Wall clock time and date at job start Wed Apr 1 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00236 * 2 1 4 4 H 1.48505 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46638 * 299.99449 * 3 2 1 6 6 H 1.48500 * 109.47495 * 59.99475 * 3 2 1 7 7 C 1.38815 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99441 * 172.52452 * 7 2 1 9 9 N 1.36932 * 120.00085 * 352.52303 * 7 2 1 10 10 C 1.47161 * 120.99267 * 324.68174 * 9 7 2 11 11 C 1.53305 * 108.41102 * 230.54182 * 10 9 7 12 12 O 1.42954 * 109.22517 * 307.71919 * 11 10 9 13 13 C 1.42966 * 114.16560 * 62.57938 * 12 11 10 14 14 C 1.47157 * 120.98037 * 144.75860 * 9 7 2 15 15 H 1.09008 * 109.67892 * 249.19682 * 14 9 7 16 16 C 1.53007 * 109.68205 * 9.70921 * 14 9 7 17 17 N 1.46495 * 109.47084 * 299.86649 * 16 14 9 18 18 C 1.34777 * 120.00048 * 180.02562 * 17 16 14 19 19 O 1.21554 * 119.99891 * 359.97438 * 18 17 16 20 20 C 1.47847 * 120.00497 * 179.72286 * 18 17 16 21 21 C 1.39595 * 120.14041 * 321.56126 * 20 18 17 22 22 C 1.37939 * 119.85404 * 180.02562 * 21 20 18 23 23 C 1.38379 * 120.13999 * 0.02562 * 22 21 20 24 24 C 1.38331 * 120.29584 * 0.02562 * 23 22 21 25 25 C 1.37983 * 120.14545 * 359.66966 * 24 23 22 26 26 C 1.50700 * 120.07338 * 180.29835 * 25 24 23 27 27 C 1.53780 * 113.61723 * 31.09076 * 26 25 24 28 28 C 1.53956 * 87.01858 * 220.04385 * 27 26 25 29 29 C 1.53775 * 113.61889 * 293.47702 * 26 25 24 30 30 H 0.97001 * 119.99544 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.65308 * 110.82577 * 10 9 7 32 32 H 1.08999 * 109.68657 * 350.28182 * 10 9 7 33 33 H 1.09002 * 109.51126 * 187.79472 * 11 10 9 34 34 H 1.09007 * 109.50910 * 67.64427 * 11 10 9 35 35 H 1.09001 * 109.50952 * 177.49731 * 13 12 11 36 36 H 1.08995 * 109.55368 * 57.37076 * 13 12 11 37 37 H 1.08996 * 109.47028 * 179.86416 * 16 14 9 38 38 H 1.09001 * 109.46598 * 59.86470 * 16 14 9 39 39 H 0.96998 * 120.00586 * 359.97438 * 17 16 14 40 40 H 1.07998 * 120.07418 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.92886 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.84977 * 179.97438 * 23 22 21 43 43 H 1.08006 * 119.92867 * 179.97438 * 24 23 22 44 44 H 1.09002 * 112.84634 * 162.28260 * 26 25 24 45 45 H 1.09002 * 113.61160 * 334.56307 * 27 26 25 46 46 H 1.08995 * 113.61397 * 105.46197 * 27 26 25 47 47 H 1.08997 * 113.53324 * 270.80707 * 28 27 26 48 48 H 1.09000 * 113.73888 * 139.94016 * 28 27 26 49 49 H 1.08998 * 113.62236 * 254.53040 * 29 26 25 50 50 H 1.09004 * 113.61625 * 25.35352 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0833 -1.2062 -0.1212 9 7 1.3342 -2.3829 0.1554 10 6 0.1547 -2.4717 1.0309 11 6 0.3425 -3.6632 1.9770 12 8 0.6529 -4.8289 1.2099 13 6 1.8760 -4.7376 0.4754 14 6 1.7668 -3.6013 -0.5476 15 1 1.0347 -3.8639 -1.3113 16 6 3.1298 -3.3629 -1.2006 17 7 3.0251 -2.2621 -2.1615 18 6 4.1091 -1.8733 -2.8616 19 8 5.1738 -2.4358 -2.6954 20 6 4.0021 -0.7664 -3.8359 21 6 2.8613 -0.6397 -4.6303 22 6 2.7680 0.3950 -5.5378 23 6 3.8023 1.3059 -5.6618 24 6 4.9360 1.1854 -4.8783 25 6 5.0393 0.1586 -3.9623 26 6 6.2722 0.0328 -3.1049 27 6 6.9340 1.3813 -2.7758 28 6 8.2870 0.6772 -2.9855 29 6 7.5431 -0.3105 -3.8997 30 1 -0.4849 0.8401 -0.0004 31 1 -0.7401 -2.6204 0.4265 32 1 0.0582 -1.5540 1.6111 33 1 -0.5768 -3.8309 2.5382 34 1 1.1590 -3.4541 2.6682 35 1 2.0600 -5.6783 -0.0437 36 1 2.6986 -4.5329 1.1605 37 1 3.4479 -4.2679 -1.7181 38 1 3.8605 -3.1072 -0.4333 39 1 2.1754 -1.8135 -2.2945 40 1 2.0540 -1.3507 -4.5353 41 1 1.8861 0.4939 -6.1533 42 1 3.7244 2.1139 -6.3740 43 1 5.7399 1.8994 -4.9803 44 1 6.1180 -0.6023 -2.2325 45 1 6.7283 2.1595 -3.5108 46 1 6.7666 1.7112 -1.7506 47 1 8.6843 0.2193 -2.0797 48 1 9.0228 1.2875 -3.5092 49 1 7.8668 -1.3444 -3.7805 50 1 7.5036 0.0030 -4.9430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051226643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:58 Heat of formation + Delta-G solvation = -8.242222 kcal Electronic energy + Delta-G solvation = -31781.773272 eV Core-core repulsion = 27775.306471 eV Total energy + Delta-G solvation = -4006.466800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.34233 -38.89982 -38.13718 -37.40249 -35.31301 -33.56601 -31.84751 -31.08791 -30.84315 -30.26744 -27.24071 -25.96297 -25.49687 -25.06049 -23.48309 -23.26268 -21.98013 -21.36972 -19.94858 -19.62590 -18.99864 -17.66946 -16.61435 -16.17067 -15.86484 -15.77029 -15.41915 -15.06253 -14.69999 -14.53761 -14.48330 -14.21099 -14.08644 -13.81557 -13.56475 -13.27389 -12.94710 -12.88833 -12.60121 -12.44107 -12.33175 -11.91190 -11.74148 -11.61492 -11.50972 -11.27494 -11.05087 -10.92494 -10.76374 -10.48058 -10.41448 -10.31197 -10.24893 -10.12735 -10.07721 -9.67355 -9.37546 -8.97400 -8.78840 -8.69333 -8.52425 -8.22543 -6.69494 -5.93948 -3.47716 1.20111 1.49970 3.21770 3.27273 3.36399 3.39221 3.72809 4.03493 4.32844 4.51609 4.69773 4.75385 4.83179 5.01601 5.06799 5.12330 5.16656 5.19289 5.24494 5.27873 5.51282 5.58305 5.61462 5.71294 5.76560 5.78528 5.84401 5.93257 5.97634 5.99906 6.01111 6.08276 6.13537 6.16363 6.17102 6.20978 6.27793 6.30847 6.45459 6.50522 6.56286 6.57277 6.73531 6.84110 7.03707 7.04422 7.10088 7.45395 7.69655 7.84441 8.21121 8.29617 8.79864 9.03765 9.62417 10.24079 11.12308 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.004148 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.699850 B = 6749.082045 C = 7329.302214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.016 3.984 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.591 5.591 10 C 0.146 3.854 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.124 3.876 15 H 0.041 0.959 16 C 0.136 3.864 17 N -0.686 5.686 18 C 0.551 3.449 19 O -0.553 6.553 20 C -0.116 4.116 21 C -0.082 4.082 22 C -0.131 4.131 23 C -0.103 4.103 24 C -0.130 4.130 25 C -0.020 4.020 26 C -0.076 4.076 27 C -0.142 4.142 28 C -0.140 4.140 29 C -0.121 4.121 30 H 0.255 0.745 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.416 0.584 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 0.054 -7.791 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.184 4.184 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.059 0.941 16 C 0.012 3.988 17 N -0.336 5.336 18 C 0.338 3.662 19 O -0.434 6.434 20 C -0.119 4.119 21 C -0.101 4.101 22 C -0.149 4.149 23 C -0.121 4.121 24 C -0.148 4.148 25 C -0.021 4.021 26 C -0.094 4.094 27 C -0.179 4.179 28 C -0.178 4.178 29 C -0.158 4.158 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.255 0.745 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.131 0.869 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.903 -0.372 -7.648 11.004 hybrid contribution -0.121 1.545 0.030 1.550 sum 7.783 1.173 -7.618 10.954 Atomic orbital electron populations 1.69968 1.05212 1.25628 1.53183 1.25220 0.95278 0.98177 0.99708 0.86392 0.79900 0.84273 0.77555 1.19889 1.21198 1.21492 1.19171 0.90641 0.82857 1.45856 0.91214 1.44045 1.32804 1.05107 1.49673 1.21379 0.89257 0.95658 0.91683 1.23354 0.99253 0.87591 0.94134 1.87801 1.40986 1.38914 1.63368 1.22859 0.86857 0.98395 0.94173 1.21446 0.93799 0.89529 0.93480 0.94136 1.21168 0.97650 0.88571 0.91401 1.45999 1.12945 1.35384 1.39303 1.18213 0.84183 0.82921 0.80927 1.90698 1.28032 1.56532 1.68152 1.19900 0.95478 0.97365 0.99179 1.21309 0.95972 0.97843 0.94945 1.21039 0.99089 0.95323 0.99448 1.21219 0.93628 0.98536 0.98738 1.20934 0.98557 0.98522 0.96756 1.19738 0.94189 0.93106 0.95026 1.21694 0.90745 0.97907 0.99010 1.23149 0.96160 0.96576 1.02019 1.22828 0.96271 0.98518 1.00154 1.22834 0.94993 0.99898 0.98084 0.93461 0.95183 0.89420 0.90255 0.94131 0.89925 0.93518 0.92244 0.91490 0.74503 0.85451 0.85743 0.86038 0.85694 0.86936 0.89968 0.91387 0.90213 0.91690 0.91004 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.00 11.27 55.49 0.63 -23.37 16 2 C 0.02 0.42 5.11 -17.43 -0.09 0.33 16 3 Si 0.89 20.96 29.56 -169.99 -5.02 15.93 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.26 -6.29 6.84 -15.06 -0.10 -6.39 16 8 H 0.07 1.77 6.02 -52.48 -0.32 1.46 16 9 N -0.59 -13.43 3.01 -164.28 -0.50 -13.92 16 10 C 0.15 3.27 5.35 -3.52 -0.02 3.25 16 11 C 0.03 0.66 6.99 37.32 0.26 0.92 16 12 O -0.39 -7.55 10.74 -35.23 -0.38 -7.93 16 13 C 0.06 0.98 6.29 37.31 0.23 1.22 16 14 C 0.12 2.41 3.21 -67.42 -0.22 2.19 16 15 H 0.04 0.82 8.14 -51.92 -0.42 0.39 16 16 C 0.14 2.51 4.46 -4.04 -0.02 2.49 16 17 N -0.69 -13.09 3.75 -61.25 -0.23 -13.32 16 18 C 0.55 10.57 6.88 -12.33 -0.08 10.48 16 19 O -0.55 -11.50 14.69 5.32 0.08 -11.43 16 20 C -0.12 -2.03 5.77 -104.97 -0.61 -2.63 16 21 C -0.08 -1.27 9.34 -39.18 -0.37 -1.63 16 22 C -0.13 -1.76 10.03 -39.64 -0.40 -2.15 16 23 C -0.10 -1.30 10.04 -39.49 -0.40 -1.70 16 24 C -0.13 -1.78 8.94 -39.64 -0.35 -2.13 16 25 C -0.02 -0.32 5.30 -104.23 -0.55 -0.87 16 26 C -0.08 -1.19 3.13 -90.96 -0.28 -1.47 16 27 C -0.14 -1.88 7.45 -25.83 -0.19 -2.07 16 28 C -0.14 -1.64 8.09 -25.83 -0.21 -1.85 16 29 C -0.12 -1.59 7.58 -25.92 -0.20 -1.79 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.16 6.55 -51.93 -0.34 1.82 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.33 7.57 -51.93 -0.39 0.94 16 39 H 0.42 8.39 6.63 -40.82 -0.27 8.12 16 40 H 0.13 1.83 7.78 -52.49 -0.41 1.42 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.13 1.42 6.28 -52.48 -0.33 1.09 16 44 H 0.11 2.10 5.96 -51.93 -0.31 1.79 16 45 H 0.08 0.97 6.02 -51.93 -0.31 0.65 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.08 0.93 7.94 -51.93 -0.41 0.51 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -28.71 389.88 -10.86 -39.57 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -7.72 Total: 12.40 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -3.59 Total: -3.81 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.10 Total: -50.61 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.30 Total: -19.35 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.71 -10.86 -39.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051226643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.329 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds