Wall clock time and date at job start Wed Apr 1 2020 02:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00236 * 2 1 4 4 H 1.48505 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46638 * 299.99449 * 3 2 1 6 6 H 1.48500 * 109.47495 * 59.99475 * 3 2 1 7 7 C 1.38815 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99441 * 172.52452 * 7 2 1 9 9 N 1.36932 * 120.00085 * 352.52303 * 7 2 1 10 10 C 1.47161 * 120.99267 * 324.68174 * 9 7 2 11 11 C 1.53305 * 108.41102 * 230.54182 * 10 9 7 12 12 O 1.42954 * 109.22517 * 307.71919 * 11 10 9 13 13 C 1.42966 * 114.16560 * 62.57938 * 12 11 10 14 14 C 1.47157 * 120.98037 * 144.75860 * 9 7 2 15 15 H 1.09008 * 109.67892 * 249.19682 * 14 9 7 16 16 C 1.53007 * 109.68205 * 9.70921 * 14 9 7 17 17 N 1.46495 * 109.47084 * 299.86649 * 16 14 9 18 18 C 1.34777 * 120.00048 * 180.02562 * 17 16 14 19 19 O 1.21554 * 119.99891 * 359.97438 * 18 17 16 20 20 C 1.47847 * 120.00497 * 179.72286 * 18 17 16 21 21 C 1.39595 * 120.14041 * 321.56126 * 20 18 17 22 22 C 1.37939 * 119.85404 * 180.02562 * 21 20 18 23 23 C 1.38379 * 120.13999 * 0.02562 * 22 21 20 24 24 C 1.38331 * 120.29584 * 0.02562 * 23 22 21 25 25 C 1.37983 * 120.14545 * 359.66966 * 24 23 22 26 26 C 1.50700 * 120.07338 * 180.29835 * 25 24 23 27 27 C 1.53780 * 113.61723 * 31.09076 * 26 25 24 28 28 C 1.53956 * 87.01858 * 220.04385 * 27 26 25 29 29 C 1.53775 * 113.61889 * 293.47702 * 26 25 24 30 30 H 0.97001 * 119.99544 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.65308 * 110.82577 * 10 9 7 32 32 H 1.08999 * 109.68657 * 350.28182 * 10 9 7 33 33 H 1.09002 * 109.51126 * 187.79472 * 11 10 9 34 34 H 1.09007 * 109.50910 * 67.64427 * 11 10 9 35 35 H 1.09001 * 109.50952 * 177.49731 * 13 12 11 36 36 H 1.08995 * 109.55368 * 57.37076 * 13 12 11 37 37 H 1.08996 * 109.47028 * 179.86416 * 16 14 9 38 38 H 1.09001 * 109.46598 * 59.86470 * 16 14 9 39 39 H 0.96998 * 120.00586 * 359.97438 * 17 16 14 40 40 H 1.07998 * 120.07418 * 359.97438 * 21 20 18 41 41 H 1.07998 * 119.92886 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.84977 * 179.97438 * 23 22 21 43 43 H 1.08006 * 119.92867 * 179.97438 * 24 23 22 44 44 H 1.09002 * 112.84634 * 162.28260 * 26 25 24 45 45 H 1.09002 * 113.61160 * 334.56307 * 27 26 25 46 46 H 1.08995 * 113.61397 * 105.46197 * 27 26 25 47 47 H 1.08997 * 113.53324 * 270.80707 * 28 27 26 48 48 H 1.09000 * 113.73888 * 139.94016 * 28 27 26 49 49 H 1.08998 * 113.62236 * 254.53040 * 29 26 25 50 50 H 1.09004 * 113.61625 * 25.35352 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0833 -1.2062 -0.1212 9 7 1.3342 -2.3829 0.1554 10 6 0.1547 -2.4717 1.0309 11 6 0.3425 -3.6632 1.9770 12 8 0.6529 -4.8289 1.2099 13 6 1.8760 -4.7376 0.4754 14 6 1.7668 -3.6013 -0.5476 15 1 1.0347 -3.8639 -1.3113 16 6 3.1298 -3.3629 -1.2006 17 7 3.0251 -2.2621 -2.1615 18 6 4.1091 -1.8733 -2.8616 19 8 5.1738 -2.4358 -2.6954 20 6 4.0021 -0.7664 -3.8359 21 6 2.8613 -0.6397 -4.6303 22 6 2.7680 0.3950 -5.5378 23 6 3.8023 1.3059 -5.6618 24 6 4.9360 1.1854 -4.8783 25 6 5.0393 0.1586 -3.9623 26 6 6.2722 0.0328 -3.1049 27 6 6.9340 1.3813 -2.7758 28 6 8.2870 0.6772 -2.9855 29 6 7.5431 -0.3105 -3.8997 30 1 -0.4849 0.8401 -0.0004 31 1 -0.7401 -2.6204 0.4265 32 1 0.0582 -1.5540 1.6111 33 1 -0.5768 -3.8309 2.5382 34 1 1.1590 -3.4541 2.6682 35 1 2.0600 -5.6783 -0.0437 36 1 2.6986 -4.5329 1.1605 37 1 3.4479 -4.2679 -1.7181 38 1 3.8605 -3.1072 -0.4333 39 1 2.1754 -1.8135 -2.2945 40 1 2.0540 -1.3507 -4.5353 41 1 1.8861 0.4939 -6.1533 42 1 3.7244 2.1139 -6.3740 43 1 5.7399 1.8994 -4.9803 44 1 6.1180 -0.6023 -2.2325 45 1 6.7283 2.1595 -3.5108 46 1 6.7666 1.7112 -1.7506 47 1 8.6843 0.2193 -2.0797 48 1 9.0228 1.2875 -3.5092 49 1 7.8668 -1.3444 -3.7805 50 1 7.5036 0.0030 -4.9430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051226643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:56 Heat of formation + Delta-G solvation = -23.589543 kcal Electronic energy + Delta-G solvation = -31782.438781 eV Core-core repulsion = 27775.306471 eV Total energy + Delta-G solvation = -4007.132310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.59638 -40.38010 -39.56883 -38.52058 -36.94306 -35.29847 -33.44706 -32.48774 -32.12685 -31.67530 -29.02146 -27.35815 -26.54118 -26.27017 -25.27079 -24.52087 -23.40987 -22.62998 -21.50008 -21.16789 -20.08246 -19.12724 -18.22868 -17.63181 -17.41371 -17.17478 -16.63828 -16.49628 -16.27885 -16.10693 -15.72911 -15.68505 -15.36193 -15.20667 -14.99637 -14.91784 -14.54270 -14.22361 -14.03559 -13.60856 -13.49207 -13.35429 -13.11338 -12.93172 -12.82284 -12.80386 -12.64385 -12.54191 -12.30817 -12.16387 -12.02588 -11.92433 -11.56971 -11.37727 -11.31508 -11.13823 -10.86146 -10.62411 -10.57650 -9.99360 -9.80830 -9.58603 -8.58730 -7.91183 -5.45740 0.03069 0.40026 1.34181 1.40553 1.47189 1.82488 2.32448 2.42442 2.82846 3.02107 3.25714 3.42110 3.61787 3.67596 3.81752 3.83280 3.97603 4.02619 4.07377 4.15604 4.19600 4.20649 4.31162 4.44623 4.46351 4.53225 4.57910 4.61890 4.64519 4.72088 4.77832 4.78635 4.85286 4.91322 4.98964 5.01451 5.08979 5.09391 5.10850 5.20741 5.27128 5.39002 5.48652 5.50237 5.55662 5.61615 5.66632 5.68802 5.98739 6.28612 6.36636 6.66491 7.09140 7.27910 7.72318 8.30895 9.12805 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.004148 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.699850 B = 6749.082045 C = 7329.302214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 0.935 3.065 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.059 0.941 9 N -0.604 5.604 10 C 0.151 3.849 11 C 0.046 3.954 12 O -0.396 6.396 13 C 0.058 3.942 14 C 0.126 3.874 15 H 0.037 0.963 16 C 0.143 3.857 17 N -0.689 5.689 18 C 0.550 3.450 19 O -0.577 6.577 20 C -0.151 4.151 21 C -0.095 4.095 22 C -0.134 4.134 23 C -0.093 4.093 24 C -0.131 4.131 25 C -0.037 4.037 26 C -0.091 4.091 27 C -0.138 4.138 28 C -0.128 4.128 29 C -0.114 4.114 30 H 0.251 0.749 31 H 0.008 0.992 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.410 0.590 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.055 0.945 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.269 0.774 -9.361 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.219 4.219 3 Si 0.764 3.236 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.077 0.923 9 N -0.330 5.330 10 C 0.026 3.974 11 C -0.032 4.032 12 O -0.315 6.315 13 C -0.020 4.020 14 C 0.020 3.980 15 H 0.055 0.945 16 C 0.018 3.982 17 N -0.339 5.339 18 C 0.338 3.662 19 O -0.460 6.460 20 C -0.154 4.154 21 C -0.113 4.113 22 C -0.152 4.152 23 C -0.111 4.111 24 C -0.149 4.149 25 C -0.038 4.038 26 C -0.110 4.110 27 C -0.175 4.175 28 C -0.165 4.165 29 C -0.152 4.152 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.248 0.752 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.178 0.822 43 H 0.170 0.830 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.112 0.888 49 H 0.074 0.926 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.766 0.324 -9.213 12.721 hybrid contribution -0.376 1.279 0.475 1.415 sum 8.389 1.603 -8.738 12.219 Atomic orbital electron populations 1.70067 1.05951 1.25580 1.55043 1.25612 0.95700 0.99969 1.00628 0.85691 0.78578 0.82189 0.77094 1.20572 1.21306 1.21819 1.19110 0.90146 0.83685 1.43953 0.92322 1.44235 1.32637 1.05689 1.50457 1.21212 0.88391 0.96153 0.91673 1.23222 1.00674 0.86060 0.93227 1.87806 1.41703 1.38532 1.63429 1.22971 0.86330 0.99052 0.93653 1.21566 0.93812 0.88807 0.93825 0.94498 1.21127 0.96648 0.89300 0.91083 1.46013 1.12721 1.35608 1.39516 1.18599 0.83566 0.83133 0.80944 1.90665 1.28716 1.57486 1.69096 1.19943 0.97335 0.97926 1.00209 1.21459 0.95438 0.98924 0.95526 1.21425 1.00422 0.94474 0.98859 1.21705 0.92434 0.98696 0.98288 1.21268 0.99830 0.97942 0.95863 1.19979 0.93930 0.93842 0.96009 1.21667 0.92020 0.99034 0.98233 1.23191 0.96633 0.95891 1.01830 1.22774 0.96067 0.97849 0.99785 1.22821 0.93764 0.99533 0.99043 0.93946 0.97347 0.92036 0.87659 0.93849 0.86417 0.93313 0.90131 0.93312 0.75234 0.85444 0.83000 0.82162 0.82954 0.91043 0.87773 0.92761 0.90745 0.88826 0.92585 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.52 11.27 21.65 0.24 -50.27 16 2 C -0.02 -1.13 5.11 84.86 0.43 -0.70 16 3 Si 0.93 44.07 29.56 68.60 2.03 46.09 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.24 -12.02 6.84 84.04 0.57 -11.45 16 8 H 0.06 3.09 6.02 -2.91 -0.02 3.08 16 9 N -0.60 -27.91 3.01 -673.67 -2.03 -29.94 16 10 C 0.15 6.88 5.35 86.36 0.46 7.34 16 11 C 0.05 1.70 6.99 72.08 0.50 2.20 16 12 O -0.40 -14.54 10.74 -148.98 -1.60 -16.14 16 13 C 0.06 1.95 6.29 72.08 0.45 2.40 16 14 C 0.13 4.86 3.21 44.96 0.14 5.01 16 15 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 16 C 0.14 5.33 4.46 86.38 0.39 5.71 16 17 N -0.69 -27.24 3.75 -465.97 -1.75 -28.99 16 18 C 0.55 21.97 6.88 86.79 0.60 22.56 16 19 O -0.58 -25.16 14.69 -3.88 -0.06 -25.21 16 20 C -0.15 -5.38 5.77 -20.09 -0.12 -5.50 16 21 C -0.09 -2.91 9.34 22.53 0.21 -2.70 16 22 C -0.13 -3.29 10.03 22.23 0.22 -3.07 16 23 C -0.09 -2.04 10.04 22.33 0.22 -1.81 16 24 C -0.13 -3.25 8.94 22.23 0.20 -3.05 16 25 C -0.04 -1.17 5.30 -19.61 -0.10 -1.28 16 26 C -0.09 -2.89 3.13 -11.02 -0.03 -2.93 16 27 C -0.14 -3.50 7.45 31.18 0.23 -3.27 16 28 C -0.13 -2.77 8.09 31.18 0.25 -2.51 16 29 C -0.11 -2.93 7.58 31.12 0.24 -2.69 16 30 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.06 3.12 6.55 -2.39 -0.02 3.10 16 33 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.05 2.00 7.57 -2.39 -0.02 1.98 16 39 H 0.41 17.20 6.63 -92.71 -0.61 16.58 16 40 H 0.13 3.74 7.78 -2.91 -0.02 3.72 16 41 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.15 2.83 6.28 -2.91 -0.02 2.82 16 44 H 0.07 2.84 5.96 -2.39 -0.01 2.82 16 45 H 0.10 2.14 6.02 -2.39 -0.01 2.13 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.09 2.06 7.94 -2.38 -0.02 2.05 16 Total: -1.00 -64.33 389.88 2.05 -62.28 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: 0.34 Total: 37.91 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.88 Total: 4.27 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -3.53 Total: -109.20 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.66 Total: -41.36 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -64.33 2.05 -62.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051226643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.693 kcal (2) G-P(sol) polarization free energy of solvation -64.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds