Wall clock time and date at job start Wed Apr 1 2020 02:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00206 * 2 1 4 4 H 1.48496 * 109.47362 * 264.31452 * 3 2 1 5 5 H 1.48500 * 109.46818 * 24.31948 * 3 2 1 6 6 H 1.48509 * 109.47305 * 144.31119 * 3 2 1 7 7 C 1.38823 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99426 * 9.28225 * 7 2 1 9 9 N 1.36929 * 120.00112 * 189.28919 * 7 2 1 10 10 C 1.47153 * 120.98375 * 49.72044 * 9 7 2 11 11 C 1.53300 * 108.38328 * 129.48875 * 10 9 7 12 12 O 1.42965 * 109.22145 * 52.30046 * 11 10 9 13 13 C 1.42955 * 114.16846 * 297.42255 * 12 11 10 14 14 C 1.47150 * 120.98325 * 229.74936 * 9 7 2 15 15 H 1.08996 * 109.68368 * 110.74778 * 14 9 7 16 16 C 1.53004 * 109.67683 * 350.23382 * 14 9 7 17 17 N 1.46498 * 109.47103 * 60.29214 * 16 14 9 18 18 C 1.34780 * 119.99578 * 179.97438 * 17 16 14 19 19 O 1.21273 * 120.00657 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99512 * 180.27023 * 18 17 16 21 21 C 1.53773 * 113.61987 * 277.22258 * 20 18 17 22 22 C 1.53773 * 87.08366 * 220.02059 * 21 20 18 23 23 C 1.50703 * 113.61361 * 139.98336 * 22 21 20 24 24 C 1.38242 * 119.99775 * 322.22412 * 23 22 21 25 25 C 1.38235 * 119.99782 * 179.74559 * 24 23 22 26 26 C 1.38245 * 120.00009 * 0.55464 * 25 24 23 27 27 C 1.38241 * 119.99728 * 359.70305 * 26 25 24 28 28 C 1.38231 * 119.99967 * 0.02562 * 27 26 25 29 29 C 1.53780 * 87.08177 * 25.43482 * 22 21 20 30 30 H 0.96997 * 120.00241 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.68437 * 249.20914 * 10 9 7 32 32 H 1.09004 * 109.68205 * 9.76930 * 10 9 7 33 33 H 1.09000 * 109.51320 * 172.22540 * 11 10 9 34 34 H 1.08998 * 109.51025 * 292.33347 * 11 10 9 35 35 H 1.08994 * 109.51428 * 302.65331 * 13 12 11 36 36 H 1.09003 * 109.51227 * 182.50180 * 13 12 11 37 37 H 1.08993 * 109.47260 * 300.28606 * 16 14 9 38 38 H 1.09005 * 109.47011 * 180.29163 * 16 14 9 39 39 H 0.97000 * 120.00359 * 359.97438 * 17 16 14 40 40 H 1.09001 * 112.84626 * 48.53498 * 20 18 17 41 41 H 1.09003 * 113.61496 * 334.57177 * 21 20 18 42 42 H 1.09005 * 113.61241 * 105.46614 * 21 20 18 43 43 H 1.09002 * 113.69102 * 270.86972 * 22 21 20 44 44 H 1.07999 * 119.99811 * 0.02562 * 24 23 22 45 45 H 1.07996 * 119.99946 * 180.27892 * 25 24 23 46 46 H 1.07996 * 119.99781 * 179.72263 * 26 25 24 47 47 H 1.07993 * 119.99816 * 180.02562 * 27 26 25 48 48 H 1.08005 * 119.99909 * 179.97438 * 28 27 26 49 49 H 1.09005 * 113.61270 * 220.02234 * 29 22 21 50 50 H 1.08995 * 113.61600 * 89.11575 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6178 1.9770 -1.3931 5 1 1.3927 2.6842 0.5766 6 1 3.4825 1.4778 0.8168 7 6 2.0103 -1.2022 -0.0005 8 1 1.4808 -2.1313 -0.1518 9 7 3.3661 -1.2101 0.1909 10 6 3.9770 -0.4796 1.3127 11 6 4.9190 -1.4342 2.0555 12 8 5.8206 -2.0290 1.1189 13 6 5.1837 -2.8317 0.1221 14 6 4.2554 -1.9487 -0.7196 15 1 4.8477 -1.2455 -1.3049 16 6 3.4211 -2.8245 -1.6566 17 7 2.5225 -1.9778 -2.4452 18 6 1.6877 -2.5355 -3.3444 19 8 1.6806 -3.7380 -3.5011 20 6 0.7676 -1.6640 -4.1600 21 6 -0.5283 -1.2802 -3.4266 22 6 -1.2554 -1.4912 -4.7650 23 6 -2.5937 -2.1698 -4.6244 24 6 -2.7625 -3.1796 -3.6954 25 6 -3.9914 -3.7984 -3.5629 26 6 -5.0485 -3.4155 -4.3673 27 6 -4.8782 -2.4094 -5.3000 28 6 -3.6508 -1.7868 -5.4286 29 6 -0.1149 -2.4508 -5.1434 30 1 -0.4850 0.8400 0.0004 31 1 4.5419 0.3715 0.9325 32 1 3.1984 -0.1307 1.9911 33 1 5.4849 -0.8786 2.8032 34 1 4.3353 -2.2136 2.5454 35 1 4.6011 -3.6167 0.6043 36 1 5.9401 -3.2816 -0.5211 37 1 2.8333 -3.5290 -1.0682 38 1 4.0832 -3.3739 -2.3259 39 1 2.5284 -1.0159 -2.3203 40 1 1.2806 -0.8168 -4.6154 41 1 -0.8200 -1.9919 -2.6542 42 1 -0.5438 -0.2471 -3.0792 43 1 -1.2977 -0.5966 -5.3862 44 1 -1.9354 -3.4817 -3.0701 45 1 -4.1245 -4.5841 -2.8340 46 1 -6.0074 -3.9021 -4.2668 47 1 -5.7041 -2.1100 -5.9281 48 1 -3.5176 -1.0010 -6.1576 49 1 0.2033 -2.3627 -6.1822 50 1 -0.2936 -3.4824 -4.8404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051264385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:09 Heat of formation + Delta-G solvation = -3.426146 kcal Electronic energy + Delta-G solvation = -31155.494641 eV Core-core repulsion = 27149.236681 eV Total energy + Delta-G solvation = -4006.257959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.24253 -39.08350 -38.49277 -36.90261 -35.31943 -33.49480 -31.81337 -31.22220 -30.85802 -30.67121 -27.60699 -26.56534 -25.28819 -24.78430 -23.34189 -22.66959 -22.32059 -21.64107 -20.01412 -19.64617 -18.71568 -17.38377 -16.73526 -16.09955 -16.00620 -15.78750 -15.29693 -15.15705 -14.94796 -14.71899 -14.52887 -14.33818 -14.05274 -13.75577 -13.54439 -13.23641 -13.09397 -12.97663 -12.67026 -12.53185 -12.17100 -12.01687 -11.88690 -11.61162 -11.53758 -11.25995 -11.10426 -10.93874 -10.82200 -10.78582 -10.48663 -10.26320 -10.25493 -10.09522 -9.90610 -9.58830 -9.28979 -8.94858 -8.76337 -8.59515 -8.46238 -8.16795 -6.72849 -6.10263 -3.73925 1.49841 1.55741 3.21235 3.33328 3.34630 3.37973 3.88646 3.94590 4.32312 4.38843 4.71895 4.79915 4.88061 5.03975 5.06315 5.12301 5.15323 5.23618 5.27774 5.35444 5.47855 5.55770 5.61633 5.65639 5.66159 5.75250 5.83633 5.86239 5.92247 5.93996 6.01433 6.09088 6.14331 6.16251 6.17726 6.25733 6.29893 6.35231 6.42254 6.54797 6.59671 6.62371 6.67161 6.74742 6.77374 6.92728 7.16408 7.24634 7.61617 7.93916 8.30618 8.36678 8.77352 8.99361 9.51212 9.98720 11.01248 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003206 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.117832 B = 8732.306970 C = 9514.480569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.050 3.950 3 Si 0.844 3.156 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.238 1.238 7 C -0.268 4.268 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.103 3.897 11 C 0.042 3.958 12 O -0.390 6.390 13 C 0.055 3.945 14 C 0.123 3.877 15 H 0.043 0.957 16 C 0.140 3.860 17 N -0.687 5.687 18 C 0.523 3.477 19 O -0.568 6.568 20 C -0.137 4.137 21 C -0.095 4.095 22 C -0.083 4.083 23 C -0.061 4.061 24 C -0.107 4.107 25 C -0.118 4.118 26 C -0.131 4.131 27 C -0.125 4.125 28 C -0.120 4.120 29 C -0.102 4.102 30 H 0.264 0.736 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.410 0.590 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.127 0.873 45 H 0.120 0.880 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.067 0.933 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 -2.104 -7.539 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.153 4.153 3 Si 0.673 3.327 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.163 1.163 7 C -0.397 4.397 8 H 0.096 0.904 9 N -0.333 5.333 10 C -0.022 4.022 11 C -0.036 4.036 12 O -0.308 6.308 13 C -0.024 4.024 14 C 0.017 3.983 15 H 0.061 0.939 16 C 0.016 3.984 17 N -0.337 5.337 18 C 0.309 3.691 19 O -0.449 6.449 20 C -0.158 4.158 21 C -0.133 4.133 22 C -0.101 4.101 23 C -0.061 4.061 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.149 4.149 27 C -0.143 4.143 28 C -0.138 4.138 29 C -0.140 4.140 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.247 0.753 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.144 0.856 45 H 0.138 0.862 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.085 0.915 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.417 -2.809 -7.619 8.243 hybrid contribution -0.038 1.611 0.216 1.626 sum -1.456 -1.198 -7.403 7.639 Atomic orbital electron populations 1.69773 1.05725 1.26741 1.50863 1.25715 0.95074 0.97687 0.96844 0.87694 0.81507 0.84287 0.79218 1.21224 1.22646 1.16255 1.18631 0.80059 0.93332 1.47649 0.90450 1.44357 1.03338 1.59320 1.26267 1.22360 0.95719 0.93565 0.90584 1.23148 0.92610 0.96653 0.91164 1.87819 1.33799 1.66887 1.42316 1.22892 0.96142 0.92786 0.90549 1.21556 0.91863 0.93598 0.91266 0.93905 1.21039 0.91777 0.93097 0.92523 1.45876 1.38413 1.11733 1.37694 1.20244 0.80254 0.88388 0.80209 1.90601 1.69596 1.15284 1.69380 1.22656 0.95617 0.99287 0.98253 1.22848 0.91589 1.03728 0.95091 1.21616 0.90638 0.98421 0.99406 1.19756 0.94896 0.95882 0.95526 1.21164 0.97642 0.95781 0.97905 1.21152 0.93187 1.00008 0.99246 1.21086 0.98747 0.98187 0.96872 1.21059 0.97192 0.97059 0.98957 1.21022 0.92922 1.00270 0.99629 1.22880 0.93545 0.99373 0.98176 0.92606 0.94092 0.90848 0.90025 0.93385 0.93112 0.89583 0.91558 0.92545 0.75280 0.87838 0.88650 0.90179 0.88698 0.85560 0.86236 0.86566 0.86545 0.86418 0.91467 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.67 13.97 55.49 0.78 -22.90 16 2 C 0.05 1.23 5.33 -17.43 -0.09 1.14 16 3 Si 0.84 18.90 26.74 -169.99 -4.55 14.35 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.24 -4.97 3.88 56.52 0.22 -4.75 16 7 C -0.27 -6.40 6.61 -15.06 -0.10 -6.50 16 8 H 0.08 2.13 7.11 -52.49 -0.37 1.75 16 9 N -0.61 -12.65 2.45 -164.30 -0.40 -13.05 16 10 C 0.10 2.01 4.27 -3.53 -0.02 1.99 16 11 C 0.04 0.72 6.99 37.31 0.26 0.98 16 12 O -0.39 -6.86 10.74 -35.23 -0.38 -7.24 16 13 C 0.06 0.90 6.29 37.31 0.23 1.13 16 14 C 0.12 2.24 3.21 -67.42 -0.22 2.02 16 15 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 16 C 0.14 2.56 4.51 -4.04 -0.02 2.54 16 17 N -0.69 -13.09 4.09 -60.29 -0.25 -13.34 16 18 C 0.52 9.99 7.36 -10.98 -0.08 9.91 16 19 O -0.57 -12.27 15.90 5.56 0.09 -12.18 16 20 C -0.14 -2.19 4.15 -90.96 -0.38 -2.57 16 21 C -0.09 -1.60 7.00 -25.93 -0.18 -1.79 16 22 C -0.08 -1.15 3.98 -90.96 -0.36 -1.52 16 23 C -0.06 -0.87 5.29 -104.62 -0.55 -1.42 16 24 C -0.11 -1.62 8.60 -39.58 -0.34 -1.96 16 25 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 26 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 27 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 28 C -0.12 -1.53 9.71 -39.59 -0.38 -1.91 16 29 C -0.10 -1.48 6.87 -25.92 -0.18 -1.66 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.04 0.82 6.13 -51.93 -0.32 0.51 16 32 H 0.07 1.50 6.86 -51.93 -0.36 1.15 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.35 7.60 -51.93 -0.39 0.95 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.41 8.12 7.25 -40.82 -0.30 7.83 16 40 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.10 1.86 6.28 -51.93 -0.33 1.53 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 44 H 0.13 2.06 6.67 -52.49 -0.35 1.71 16 45 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.10 1.57 7.00 -51.93 -0.36 1.21 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -28.24 389.07 -10.46 -38.69 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -8.01 Total: 15.25 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.60 Total: -5.46 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.13 Total: -49.28 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.29 Total: -19.42 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.55 Total: 14.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.24 -10.46 -38.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051264385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.269 kcal (2) G-P(sol) polarization free energy of solvation -28.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds