Wall clock time and date at job start Wed Apr 1 2020 02:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00206 * 2 1 4 4 H 1.48496 * 109.47362 * 264.31452 * 3 2 1 5 5 H 1.48500 * 109.46818 * 24.31948 * 3 2 1 6 6 H 1.48509 * 109.47305 * 144.31119 * 3 2 1 7 7 C 1.38823 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99426 * 9.28225 * 7 2 1 9 9 N 1.36929 * 120.00112 * 189.28919 * 7 2 1 10 10 C 1.47153 * 120.98375 * 49.72044 * 9 7 2 11 11 C 1.53300 * 108.38328 * 129.48875 * 10 9 7 12 12 O 1.42965 * 109.22145 * 52.30046 * 11 10 9 13 13 C 1.42955 * 114.16846 * 297.42255 * 12 11 10 14 14 C 1.47150 * 120.98325 * 229.74936 * 9 7 2 15 15 H 1.08996 * 109.68368 * 110.74778 * 14 9 7 16 16 C 1.53004 * 109.67683 * 350.23382 * 14 9 7 17 17 N 1.46498 * 109.47103 * 60.29214 * 16 14 9 18 18 C 1.34780 * 119.99578 * 179.97438 * 17 16 14 19 19 O 1.21273 * 120.00657 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99512 * 180.27023 * 18 17 16 21 21 C 1.53773 * 113.61987 * 277.22258 * 20 18 17 22 22 C 1.53773 * 87.08366 * 220.02059 * 21 20 18 23 23 C 1.50703 * 113.61361 * 139.98336 * 22 21 20 24 24 C 1.38242 * 119.99775 * 322.22412 * 23 22 21 25 25 C 1.38235 * 119.99782 * 179.74559 * 24 23 22 26 26 C 1.38245 * 120.00009 * 0.55464 * 25 24 23 27 27 C 1.38241 * 119.99728 * 359.70305 * 26 25 24 28 28 C 1.38231 * 119.99967 * 0.02562 * 27 26 25 29 29 C 1.53780 * 87.08177 * 25.43482 * 22 21 20 30 30 H 0.96997 * 120.00241 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.68437 * 249.20914 * 10 9 7 32 32 H 1.09004 * 109.68205 * 9.76930 * 10 9 7 33 33 H 1.09000 * 109.51320 * 172.22540 * 11 10 9 34 34 H 1.08998 * 109.51025 * 292.33347 * 11 10 9 35 35 H 1.08994 * 109.51428 * 302.65331 * 13 12 11 36 36 H 1.09003 * 109.51227 * 182.50180 * 13 12 11 37 37 H 1.08993 * 109.47260 * 300.28606 * 16 14 9 38 38 H 1.09005 * 109.47011 * 180.29163 * 16 14 9 39 39 H 0.97000 * 120.00359 * 359.97438 * 17 16 14 40 40 H 1.09001 * 112.84626 * 48.53498 * 20 18 17 41 41 H 1.09003 * 113.61496 * 334.57177 * 21 20 18 42 42 H 1.09005 * 113.61241 * 105.46614 * 21 20 18 43 43 H 1.09002 * 113.69102 * 270.86972 * 22 21 20 44 44 H 1.07999 * 119.99811 * 0.02562 * 24 23 22 45 45 H 1.07996 * 119.99946 * 180.27892 * 25 24 23 46 46 H 1.07996 * 119.99781 * 179.72263 * 26 25 24 47 47 H 1.07993 * 119.99816 * 180.02562 * 27 26 25 48 48 H 1.08005 * 119.99909 * 179.97438 * 28 27 26 49 49 H 1.09005 * 113.61270 * 220.02234 * 29 22 21 50 50 H 1.08995 * 113.61600 * 89.11575 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6178 1.9770 -1.3931 5 1 1.3927 2.6842 0.5766 6 1 3.4825 1.4778 0.8168 7 6 2.0103 -1.2022 -0.0005 8 1 1.4808 -2.1313 -0.1518 9 7 3.3661 -1.2101 0.1909 10 6 3.9770 -0.4796 1.3127 11 6 4.9190 -1.4342 2.0555 12 8 5.8206 -2.0290 1.1189 13 6 5.1837 -2.8317 0.1221 14 6 4.2554 -1.9487 -0.7196 15 1 4.8477 -1.2455 -1.3049 16 6 3.4211 -2.8245 -1.6566 17 7 2.5225 -1.9778 -2.4452 18 6 1.6877 -2.5355 -3.3444 19 8 1.6806 -3.7380 -3.5011 20 6 0.7676 -1.6640 -4.1600 21 6 -0.5283 -1.2802 -3.4266 22 6 -1.2554 -1.4912 -4.7650 23 6 -2.5937 -2.1698 -4.6244 24 6 -2.7625 -3.1796 -3.6954 25 6 -3.9914 -3.7984 -3.5629 26 6 -5.0485 -3.4155 -4.3673 27 6 -4.8782 -2.4094 -5.3000 28 6 -3.6508 -1.7868 -5.4286 29 6 -0.1149 -2.4508 -5.1434 30 1 -0.4850 0.8400 0.0004 31 1 4.5419 0.3715 0.9325 32 1 3.1984 -0.1307 1.9911 33 1 5.4849 -0.8786 2.8032 34 1 4.3353 -2.2136 2.5454 35 1 4.6011 -3.6167 0.6043 36 1 5.9401 -3.2816 -0.5211 37 1 2.8333 -3.5290 -1.0682 38 1 4.0832 -3.3739 -2.3259 39 1 2.5284 -1.0159 -2.3203 40 1 1.2806 -0.8168 -4.6154 41 1 -0.8200 -1.9919 -2.6542 42 1 -0.5438 -0.2471 -3.0792 43 1 -1.2977 -0.5966 -5.3862 44 1 -1.9354 -3.4817 -3.0701 45 1 -4.1245 -4.5841 -2.8340 46 1 -6.0074 -3.9021 -4.2668 47 1 -5.7041 -2.1100 -5.9281 48 1 -3.5176 -1.0010 -6.1576 49 1 0.2033 -2.3627 -6.1822 50 1 -0.2936 -3.4824 -4.8404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051264385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:07 Heat of formation + Delta-G solvation = -19.338067 kcal Electronic energy + Delta-G solvation = -31156.184633 eV Core-core repulsion = 27149.236681 eV Total energy + Delta-G solvation = -4006.947952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.56233 -40.47388 -39.82373 -38.19252 -36.89603 -35.16655 -33.61604 -32.62940 -32.04319 -31.71359 -29.24206 -27.95112 -26.59020 -26.12541 -25.06228 -23.93404 -23.51285 -22.89958 -21.62281 -21.02298 -20.02136 -18.88598 -18.24924 -17.58023 -17.44030 -17.19454 -16.68652 -16.51436 -16.44299 -15.96286 -15.91470 -15.69227 -15.54825 -15.16994 -14.97320 -14.58788 -14.46183 -14.25060 -14.11821 -13.87588 -13.70931 -13.47444 -13.36931 -13.07431 -12.75658 -12.74626 -12.45135 -12.37096 -12.26712 -12.20582 -12.04935 -11.68315 -11.45858 -11.39474 -11.36268 -11.30262 -10.88947 -10.51552 -10.37508 -9.79812 -9.78793 -9.51665 -8.47369 -8.06168 -5.69178 0.46779 0.53035 1.40893 1.51194 1.54806 1.77671 2.43916 2.50240 2.87319 2.95062 3.14035 3.25179 3.55642 3.70858 3.75742 3.95202 4.00241 4.07708 4.14260 4.17223 4.20704 4.23275 4.30894 4.33841 4.40327 4.45981 4.57105 4.57966 4.64386 4.65750 4.73086 4.77156 4.82547 4.84939 4.88157 4.96986 5.05361 5.07365 5.12847 5.16473 5.24468 5.25938 5.45084 5.61157 5.64870 5.69027 5.83059 6.01347 6.16507 6.23841 6.33920 6.77510 6.96599 7.42106 7.59510 8.11119 9.07686 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003206 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.117832 B = 8732.306970 C = 9514.480569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.011 3.989 3 Si 0.894 3.106 4 H -0.284 1.284 5 H -0.317 1.317 6 H -0.210 1.210 7 C -0.243 4.243 8 H 0.031 0.969 9 N -0.617 5.617 10 C 0.098 3.902 11 C 0.049 3.951 12 O -0.392 6.392 13 C 0.058 3.942 14 C 0.125 3.875 15 H 0.055 0.945 16 C 0.144 3.856 17 N -0.689 5.689 18 C 0.516 3.484 19 O -0.598 6.598 20 C -0.134 4.134 21 C -0.097 4.097 22 C -0.064 4.064 23 C -0.079 4.079 24 C -0.134 4.134 25 C -0.134 4.134 26 C -0.131 4.131 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.094 4.094 30 H 0.259 0.741 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.120 0.880 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.407 0.593 40 H 0.132 0.868 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.144 0.856 47 H 0.150 0.850 48 H 0.145 0.855 49 H 0.096 0.904 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -0.884 -9.211 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.188 4.188 3 Si 0.722 3.278 4 H -0.210 1.210 5 H -0.246 1.246 6 H -0.133 1.133 7 C -0.372 4.372 8 H 0.048 0.952 9 N -0.345 5.345 10 C -0.027 4.027 11 C -0.029 4.029 12 O -0.310 6.310 13 C -0.020 4.020 14 C 0.020 3.980 15 H 0.073 0.927 16 C 0.019 3.981 17 N -0.337 5.337 18 C 0.304 3.696 19 O -0.481 6.481 20 C -0.155 4.155 21 C -0.135 4.135 22 C -0.082 4.082 23 C -0.080 4.080 24 C -0.152 4.152 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.140 4.140 28 C -0.139 4.139 29 C -0.131 4.131 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.138 0.862 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.243 0.757 40 H 0.150 0.850 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.143 0.857 44 H 0.113 0.887 45 H 0.144 0.856 46 H 0.162 0.838 47 H 0.168 0.832 48 H 0.163 0.837 49 H 0.114 0.886 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.365 -1.605 -9.277 9.422 hybrid contribution -0.398 1.114 0.800 1.428 sum -0.763 -0.491 -8.477 8.525 Atomic orbital electron populations 1.69921 1.07341 1.26939 1.53139 1.26139 0.95337 1.00272 0.97079 0.86911 0.81203 0.80198 0.79479 1.21011 1.24556 1.13329 1.18146 0.81439 0.91383 1.46262 0.95186 1.44444 1.02540 1.59812 1.27670 1.22398 0.95860 0.94299 0.90098 1.23122 0.92461 0.96115 0.91214 1.87831 1.33869 1.66874 1.42424 1.22956 0.96592 0.91988 0.90462 1.21676 0.91530 0.93706 0.91117 0.92722 1.21038 0.91587 0.92766 0.92701 1.45928 1.38614 1.11539 1.37621 1.20831 0.80164 0.88403 0.80237 1.90575 1.70423 1.16685 1.70392 1.22801 0.94696 0.99906 0.98102 1.22671 0.93474 1.01422 0.95952 1.21579 0.90292 0.99141 0.97144 1.19862 0.95770 0.96091 0.96228 1.21107 0.97726 0.97489 0.98867 1.21351 0.93214 1.00444 1.00162 1.21447 0.99196 0.98120 0.96071 1.21499 0.97791 0.96108 0.98645 1.21350 0.92536 1.00646 0.99414 1.22779 0.93332 0.97892 0.99142 0.93185 0.93538 0.92122 0.86818 0.93887 0.93786 0.86208 0.94609 0.90343 0.75661 0.85015 0.92563 0.91799 0.85709 0.88660 0.85605 0.83784 0.83197 0.83731 0.88575 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.07 13.97 21.65 0.30 -51.77 16 2 C 0.01 0.56 5.33 84.87 0.45 1.01 16 3 Si 0.89 39.10 26.74 68.60 1.83 40.93 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.32 -14.82 7.11 99.48 0.71 -14.12 16 6 H -0.21 -8.17 3.88 99.48 0.39 -7.78 16 7 C -0.24 -12.03 6.61 84.04 0.56 -11.47 16 8 H 0.03 1.79 7.11 -2.91 -0.02 1.77 16 9 N -0.62 -25.62 2.45 -673.72 -1.65 -27.27 16 10 C 0.10 3.66 4.27 86.36 0.37 4.03 16 11 C 0.05 1.53 6.99 72.08 0.50 2.04 16 12 O -0.39 -12.62 10.74 -148.98 -1.60 -14.22 16 13 C 0.06 1.78 6.29 72.08 0.45 2.24 16 14 C 0.13 4.41 3.21 44.97 0.14 4.55 16 15 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.14 5.33 4.51 86.38 0.39 5.71 16 17 N -0.69 -27.03 4.09 -463.06 -1.89 -28.92 16 18 C 0.52 20.57 7.36 87.66 0.64 21.21 16 19 O -0.60 -27.15 15.90 -3.01 -0.05 -27.20 16 20 C -0.13 -4.38 4.15 -11.01 -0.05 -4.43 16 21 C -0.10 -3.50 7.00 31.12 0.22 -3.28 16 22 C -0.06 -1.77 3.98 -11.02 -0.04 -1.81 16 23 C -0.08 -2.30 5.29 -19.86 -0.11 -2.41 16 24 C -0.13 -4.36 8.60 22.27 0.19 -4.17 16 25 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 26 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 27 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 28 C -0.12 -2.84 9.71 22.27 0.22 -2.63 16 29 C -0.09 -2.73 6.87 31.12 0.21 -2.52 16 30 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.05 1.72 6.13 -2.39 -0.01 1.71 16 32 H 0.06 2.42 6.86 -2.38 -0.02 2.40 16 33 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.04 1.54 7.60 -2.39 -0.02 1.52 16 38 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.41 16.42 7.25 -92.71 -0.67 15.75 16 40 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 41 H 0.06 2.46 6.28 -2.39 -0.01 2.44 16 42 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.12 2.74 8.09 -2.39 -0.02 2.73 16 44 H 0.10 3.59 6.67 -2.91 -0.02 3.57 16 45 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 46 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 47 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 48 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 49 H 0.10 2.24 8.14 -2.38 -0.02 2.23 16 50 H 0.07 2.43 7.00 -2.39 -0.02 2.41 16 Total: -1.00 -65.27 389.07 1.72 -63.55 By element: Atomic # 1 Polarization: 45.48 SS G_CDS: -0.05 Total: 45.43 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 4.83 Total: -0.53 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.24 Total: -107.96 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.65 Total: -41.42 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.83 Total: 40.93 kcal Total: -65.27 1.72 -63.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051264385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.209 kcal (2) G-P(sol) polarization free energy of solvation -65.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds