Wall clock time and date at job start Wed Apr 1 2020 02:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00196 * 2 1 4 4 H 1.48496 * 109.47079 * 269.99893 * 3 2 1 5 5 H 1.48501 * 109.46954 * 30.00112 * 3 2 1 6 6 H 1.48505 * 109.46991 * 149.99635 * 3 2 1 7 7 C 1.38816 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99728 * 169.81749 * 7 2 1 9 9 N 1.36935 * 120.00274 * 349.81438 * 7 2 1 10 10 C 1.43436 * 120.53462 * 151.35514 * 9 7 2 11 11 C 1.54865 * 116.10337 * 271.55774 * 10 9 7 12 12 C 1.54840 * 110.16144 * 318.71425 * 11 10 9 13 13 C 1.50129 * 110.77843 * 321.07062 * 12 11 10 14 14 H 1.09000 * 110.25069 * 338.58856 * 13 12 11 15 15 N 1.46506 * 110.24830 * 216.67671 * 13 12 11 16 16 C 1.34780 * 119.99724 * 154.99829 * 15 13 12 17 17 O 1.21276 * 120.00120 * 355.35941 * 16 15 13 18 18 C 1.50700 * 119.99407 * 175.35930 * 16 15 13 19 19 H 1.09004 * 109.33837 * 128.28644 * 18 16 15 20 20 O 1.42720 * 109.34329 * 8.60478 * 18 16 15 21 21 C 1.43222 * 113.11824 * 187.98933 * 20 18 16 22 22 C 1.52968 * 108.47750 * 70.71631 * 21 20 18 23 23 C 1.50742 * 109.76408 * 310.83491 * 22 21 20 24 24 C 1.38600 * 118.76521 * 196.81169 * 23 22 21 25 25 C 1.37405 * 120.43710 * 180.59096 * 24 23 22 26 26 C 1.38257 * 119.80480 * 359.61157 * 25 24 23 27 27 C 1.38058 * 119.89788 * 0.17593 * 26 25 24 28 28 C 1.37675 * 121.29913 * 16.99781 * 23 22 21 29 29 C 1.52522 * 105.41909 * 97.70455 * 13 12 11 30 30 C 1.46238 * 114.27949 * 270.59663 * 29 13 12 31 31 H 0.97007 * 119.99855 * 0.02562 * 1 2 3 32 32 H 1.09003 * 108.16074 * 33.31418 * 10 9 7 33 33 H 1.09000 * 108.15427 * 150.08781 * 10 9 7 34 34 H 1.09000 * 109.37884 * 198.48444 * 11 10 9 35 35 H 1.08997 * 109.31503 * 78.90914 * 11 10 9 36 36 H 1.09003 * 109.20965 * 200.74930 * 12 11 10 37 37 H 1.08994 * 109.21019 * 81.38730 * 12 11 10 38 38 H 0.96997 * 120.00060 * 335.00107 * 15 13 12 39 39 H 1.09000 * 109.63008 * 190.40904 * 21 20 18 40 40 H 1.08999 * 109.63621 * 311.01395 * 21 20 18 41 41 H 1.08995 * 109.42801 * 70.93204 * 22 21 20 42 42 H 1.09005 * 109.42046 * 190.81022 * 22 21 20 43 43 H 1.07996 * 119.85853 * 0.20376 * 24 23 22 44 44 H 1.07997 * 120.12814 * 179.85872 * 25 24 23 45 45 H 1.08009 * 120.05096 * 180.15631 * 26 25 24 46 46 H 1.08007 * 119.84638 * 180.02562 * 27 26 25 47 47 H 1.09002 * 108.52141 * 31.83856 * 29 13 12 48 48 H 1.09006 * 108.52432 * 149.34880 * 29 13 12 49 49 H 1.09003 * 109.84608 * 177.91427 * 30 29 13 50 50 H 1.09003 * 109.84347 * 298.89391 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0774 -1.2097 -0.1648 9 7 1.3416 -2.3787 0.2108 10 6 1.8267 -3.6038 -0.3559 11 6 1.3266 -3.9397 -1.7826 12 6 -0.1787 -3.6016 -1.9139 13 6 -0.9169 -3.9612 -0.6571 14 1 -0.3550 -4.7021 -0.0884 15 7 -2.2495 -4.4763 -0.9816 16 6 -2.8793 -5.3038 -0.1242 17 8 -2.3103 -5.6891 0.8751 18 6 -4.2906 -5.7501 -0.4073 19 1 -4.3448 -6.8370 -0.3449 20 8 -4.6639 -5.3329 -1.7201 21 6 -6.0494 -5.5543 -2.0078 22 6 -6.8791 -4.5664 -1.1857 23 6 -6.4303 -4.5975 0.2530 24 6 -7.2608 -4.0575 1.2225 25 6 -6.8805 -4.0566 2.5429 26 6 -5.6651 -4.6051 2.9083 27 6 -4.8376 -5.1476 1.9456 28 6 -5.2194 -5.1449 0.6129 29 6 -1.0313 -2.6611 0.1322 30 6 0.0885 -2.4069 1.0377 31 1 -0.4850 0.8401 -0.0004 32 1 2.9156 -3.5599 -0.3788 33 1 1.5357 -4.4216 0.3035 34 1 1.4768 -5.0015 -1.9779 35 1 1.8926 -3.3571 -2.5094 36 1 -0.6001 -4.1601 -2.7497 37 1 -0.2913 -2.5341 -2.1028 38 1 -2.6785 -4.2218 -1.8135 39 1 -6.2334 -5.3922 -3.0698 40 1 -6.3211 -6.5747 -1.7375 41 1 -6.7463 -3.5611 -1.5853 42 1 -7.9320 -4.8426 -1.2421 43 1 -8.2105 -3.6287 0.9388 44 1 -7.5305 -3.6325 3.2939 45 1 -5.3634 -4.6088 3.9454 46 1 -3.8885 -5.5762 2.2321 47 1 -1.1012 -1.8329 -0.5731 48 1 -1.9503 -2.6912 0.7177 49 1 -0.0484 -1.4467 1.5351 50 1 0.1525 -3.2030 1.7796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052614726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:13 Heat of formation + Delta-G solvation = -25.376214 kcal Electronic energy + Delta-G solvation = -31621.868582 eV Core-core repulsion = 27614.658796 eV Total energy + Delta-G solvation = -4007.209786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.89007 -39.21407 -37.78316 -37.47385 -34.51014 -33.26071 -32.39157 -31.88736 -30.86157 -30.42319 -29.52002 -26.67628 -25.81050 -24.16824 -23.67123 -23.03266 -22.50236 -20.62486 -20.05829 -19.86470 -19.11454 -17.49799 -17.25251 -16.67630 -16.27116 -15.73677 -15.50756 -15.38181 -14.88796 -14.72137 -14.43977 -13.89141 -13.80956 -13.68936 -13.64771 -13.42633 -13.18482 -12.88984 -12.74103 -12.50192 -12.12759 -11.98256 -11.89063 -11.69897 -11.35462 -11.28202 -11.15623 -10.89245 -10.76344 -10.70231 -10.30362 -10.11675 -9.96205 -9.91315 -9.81605 -9.57119 -9.43321 -9.19993 -8.83801 -8.70523 -8.58727 -8.25052 -6.57486 -5.72687 -3.20593 1.17285 1.31406 2.78560 3.32844 3.39411 3.46533 3.48476 3.52088 3.70649 4.42940 4.45646 4.53418 4.61003 4.88529 4.89848 4.98257 5.08922 5.16155 5.22624 5.30657 5.39899 5.49119 5.54465 5.60377 5.64612 5.71658 5.76477 5.86266 5.88469 6.01089 6.21317 6.33765 6.34973 6.39347 6.41412 6.47580 6.56189 6.63822 6.69836 6.76850 6.91372 6.93120 6.98091 7.01167 7.14925 7.20971 7.36704 7.67869 7.79524 7.93571 8.05796 8.51607 8.53025 9.26001 9.91059 10.47083 11.33323 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.003241 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.178086 B = 8638.228968 C = 9332.928340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.155 3.845 11 C -0.139 4.139 12 C -0.112 4.112 13 C 0.142 3.858 14 H 0.086 0.914 15 N -0.700 5.700 16 C 0.531 3.469 17 O -0.538 6.538 18 C 0.117 3.883 19 H 0.100 0.900 20 O -0.370 6.370 21 C 0.062 3.938 22 C -0.116 4.116 23 C -0.068 4.068 24 C -0.125 4.125 25 C -0.111 4.111 26 C -0.123 4.123 27 C -0.098 4.098 28 C -0.114 4.114 29 C -0.131 4.131 30 C 0.171 3.829 31 H 0.252 0.748 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.403 0.597 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.146 0.854 47 H 0.104 0.896 48 H 0.026 0.974 49 H 0.091 0.909 50 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.207 -11.586 -2.358 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.082 0.918 9 N -0.310 5.310 10 C 0.026 3.974 11 C -0.180 4.180 12 C -0.150 4.150 13 C 0.039 3.961 14 H 0.104 0.896 15 N -0.349 5.349 16 C 0.315 3.685 17 O -0.416 6.416 18 C 0.056 3.944 19 H 0.117 0.883 20 O -0.288 6.288 21 C -0.015 4.015 22 C -0.154 4.154 23 C -0.068 4.068 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.141 4.141 27 C -0.116 4.116 28 C -0.115 4.115 29 C -0.170 4.170 30 C 0.047 3.953 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.238 0.762 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.164 0.836 47 H 0.122 0.878 48 H 0.045 0.955 49 H 0.109 0.891 50 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -15.740 -11.579 -1.754 19.619 hybrid contribution -0.216 1.060 -0.364 1.141 sum -15.957 -10.519 -2.118 19.229 Atomic orbital electron populations 1.69891 1.05033 1.24979 1.55022 1.25059 0.95390 0.98078 1.00862 0.86295 0.79071 0.83817 0.77536 1.21578 1.21746 1.20641 1.19209 0.90822 0.84116 1.43439 0.91777 1.44175 1.28614 1.03568 1.54655 1.20434 0.96542 0.89272 0.91173 1.22812 0.95056 0.98445 1.01733 1.21688 0.95638 1.02531 0.95149 1.20586 0.80898 0.97076 0.97579 0.89637 1.46234 1.19334 1.46777 1.22548 1.19762 0.86078 0.79063 0.83643 1.90681 1.65773 1.57511 1.27638 1.21080 0.91828 0.99107 0.82341 0.88263 1.88014 1.26228 1.84926 1.29652 1.22663 0.80667 0.97931 1.00211 1.21155 1.00354 1.01872 0.91970 1.19364 0.93782 0.98280 0.95423 1.20816 0.99757 1.00828 0.92915 1.21006 0.96733 0.99033 0.96179 1.21163 0.94436 0.98836 0.99705 1.21584 1.00395 0.97705 0.91881 1.19618 0.95113 1.01969 0.94789 1.21362 0.98362 0.96243 1.01052 1.20068 0.84451 0.99586 0.91156 0.93817 0.94952 0.95363 0.93747 0.92716 0.94050 0.90160 0.76171 0.87764 0.92367 0.89334 0.89621 0.86068 0.85991 0.85760 0.83644 0.87772 0.95518 0.89066 0.97600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 9.08 55.49 0.50 -24.42 16 2 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 3 Si 0.90 21.54 29.57 -169.99 -5.03 16.51 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.65 9.62 -15.06 -0.14 -6.79 16 8 H 0.06 1.72 7.85 -52.48 -0.41 1.31 16 9 N -0.59 -14.68 2.59 -175.10 -0.45 -15.13 16 10 C 0.15 3.34 5.18 -4.68 -0.02 3.32 16 11 C -0.14 -2.65 6.40 -24.78 -0.16 -2.81 16 12 C -0.11 -2.13 5.30 -27.19 -0.14 -2.28 16 13 C 0.14 2.77 2.27 -69.60 -0.16 2.61 16 14 H 0.09 1.82 5.65 -51.93 -0.29 1.52 16 15 N -0.70 -11.86 4.90 -55.44 -0.27 -12.14 16 16 C 0.53 8.92 6.87 -10.98 -0.08 8.85 16 17 O -0.54 -10.51 14.39 5.56 0.08 -10.43 16 18 C 0.12 1.57 3.23 -29.05 -0.09 1.48 16 19 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 20 O -0.37 -4.41 9.17 -35.23 -0.32 -4.73 16 21 C 0.06 0.52 6.85 37.14 0.25 0.78 16 22 C -0.12 -1.01 6.00 -27.88 -0.17 -1.18 16 23 C -0.07 -0.80 5.77 -104.67 -0.60 -1.40 16 24 C -0.13 -1.34 9.64 -39.75 -0.38 -1.73 16 25 C -0.11 -1.22 10.02 -39.88 -0.40 -1.62 16 26 C -0.12 -1.53 10.05 -39.64 -0.40 -1.93 16 27 C -0.10 -1.40 9.06 -39.50 -0.36 -1.75 16 28 C -0.11 -1.55 5.45 -104.70 -0.57 -2.12 16 29 C -0.13 -2.95 4.71 -30.19 -0.14 -3.09 16 30 C 0.17 4.20 5.24 -5.21 -0.03 4.17 16 31 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.03 0.69 8.00 -51.93 -0.42 0.27 16 33 H 0.03 0.59 6.88 -51.93 -0.36 0.23 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 37 H 0.08 1.77 6.83 -51.93 -0.35 1.42 16 38 H 0.40 6.18 7.33 -40.82 -0.30 5.88 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 46 H 0.15 2.28 5.83 -52.48 -0.31 1.98 16 47 H 0.10 2.63 5.13 -51.93 -0.27 2.36 16 48 H 0.03 0.61 8.02 -51.93 -0.42 0.19 16 49 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 50 H 0.01 0.14 8.12 -51.93 -0.42 -0.28 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -30.08 380.83 -11.06 -41.15 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.63 Total: 8.93 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -3.68 Total: -5.48 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.22 Total: -51.69 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.24 Total: -15.16 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.08 -11.06 -41.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052614726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.770 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds