Wall clock time and date at job start Wed Apr 1 2020 02:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00196 * 2 1 4 4 H 1.48496 * 109.47079 * 269.99893 * 3 2 1 5 5 H 1.48501 * 109.46954 * 30.00112 * 3 2 1 6 6 H 1.48505 * 109.46991 * 149.99635 * 3 2 1 7 7 C 1.38816 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99728 * 169.81749 * 7 2 1 9 9 N 1.36935 * 120.00274 * 349.81438 * 7 2 1 10 10 C 1.43436 * 120.53462 * 151.35514 * 9 7 2 11 11 C 1.54865 * 116.10337 * 271.55774 * 10 9 7 12 12 C 1.54840 * 110.16144 * 318.71425 * 11 10 9 13 13 C 1.50129 * 110.77843 * 321.07062 * 12 11 10 14 14 H 1.09000 * 110.25069 * 338.58856 * 13 12 11 15 15 N 1.46506 * 110.24830 * 216.67671 * 13 12 11 16 16 C 1.34780 * 119.99724 * 154.99829 * 15 13 12 17 17 O 1.21276 * 120.00120 * 355.35941 * 16 15 13 18 18 C 1.50700 * 119.99407 * 175.35930 * 16 15 13 19 19 H 1.09004 * 109.33837 * 128.28644 * 18 16 15 20 20 O 1.42720 * 109.34329 * 8.60478 * 18 16 15 21 21 C 1.43222 * 113.11824 * 187.98933 * 20 18 16 22 22 C 1.52968 * 108.47750 * 70.71631 * 21 20 18 23 23 C 1.50742 * 109.76408 * 310.83491 * 22 21 20 24 24 C 1.38600 * 118.76521 * 196.81169 * 23 22 21 25 25 C 1.37405 * 120.43710 * 180.59096 * 24 23 22 26 26 C 1.38257 * 119.80480 * 359.61157 * 25 24 23 27 27 C 1.38058 * 119.89788 * 0.17593 * 26 25 24 28 28 C 1.37675 * 121.29913 * 16.99781 * 23 22 21 29 29 C 1.52522 * 105.41909 * 97.70455 * 13 12 11 30 30 C 1.46238 * 114.27949 * 270.59663 * 29 13 12 31 31 H 0.97007 * 119.99855 * 0.02562 * 1 2 3 32 32 H 1.09003 * 108.16074 * 33.31418 * 10 9 7 33 33 H 1.09000 * 108.15427 * 150.08781 * 10 9 7 34 34 H 1.09000 * 109.37884 * 198.48444 * 11 10 9 35 35 H 1.08997 * 109.31503 * 78.90914 * 11 10 9 36 36 H 1.09003 * 109.20965 * 200.74930 * 12 11 10 37 37 H 1.08994 * 109.21019 * 81.38730 * 12 11 10 38 38 H 0.96997 * 120.00060 * 335.00107 * 15 13 12 39 39 H 1.09000 * 109.63008 * 190.40904 * 21 20 18 40 40 H 1.08999 * 109.63621 * 311.01395 * 21 20 18 41 41 H 1.08995 * 109.42801 * 70.93204 * 22 21 20 42 42 H 1.09005 * 109.42046 * 190.81022 * 22 21 20 43 43 H 1.07996 * 119.85853 * 0.20376 * 24 23 22 44 44 H 1.07997 * 120.12814 * 179.85872 * 25 24 23 45 45 H 1.08009 * 120.05096 * 180.15631 * 26 25 24 46 46 H 1.08007 * 119.84638 * 180.02562 * 27 26 25 47 47 H 1.09002 * 108.52141 * 31.83856 * 29 13 12 48 48 H 1.09006 * 108.52432 * 149.34880 * 29 13 12 49 49 H 1.09003 * 109.84608 * 177.91427 * 30 29 13 50 50 H 1.09003 * 109.84347 * 298.89391 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0774 -1.2097 -0.1648 9 7 1.3416 -2.3787 0.2108 10 6 1.8267 -3.6038 -0.3559 11 6 1.3266 -3.9397 -1.7826 12 6 -0.1787 -3.6016 -1.9139 13 6 -0.9169 -3.9612 -0.6571 14 1 -0.3550 -4.7021 -0.0884 15 7 -2.2495 -4.4763 -0.9816 16 6 -2.8793 -5.3038 -0.1242 17 8 -2.3103 -5.6891 0.8751 18 6 -4.2906 -5.7501 -0.4073 19 1 -4.3448 -6.8370 -0.3449 20 8 -4.6639 -5.3329 -1.7201 21 6 -6.0494 -5.5543 -2.0078 22 6 -6.8791 -4.5664 -1.1857 23 6 -6.4303 -4.5975 0.2530 24 6 -7.2608 -4.0575 1.2225 25 6 -6.8805 -4.0566 2.5429 26 6 -5.6651 -4.6051 2.9083 27 6 -4.8376 -5.1476 1.9456 28 6 -5.2194 -5.1449 0.6129 29 6 -1.0313 -2.6611 0.1322 30 6 0.0885 -2.4069 1.0377 31 1 -0.4850 0.8401 -0.0004 32 1 2.9156 -3.5599 -0.3788 33 1 1.5357 -4.4216 0.3035 34 1 1.4768 -5.0015 -1.9779 35 1 1.8926 -3.3571 -2.5094 36 1 -0.6001 -4.1601 -2.7497 37 1 -0.2913 -2.5341 -2.1028 38 1 -2.6785 -4.2218 -1.8135 39 1 -6.2334 -5.3922 -3.0698 40 1 -6.3211 -6.5747 -1.7375 41 1 -6.7463 -3.5611 -1.5853 42 1 -7.9320 -4.8426 -1.2421 43 1 -8.2105 -3.6287 0.9388 44 1 -7.5305 -3.6325 3.2939 45 1 -5.3634 -4.6088 3.9454 46 1 -3.8885 -5.5762 2.2321 47 1 -1.1012 -1.8329 -0.5731 48 1 -1.9503 -2.6912 0.7177 49 1 -0.0484 -1.4467 1.5351 50 1 0.1525 -3.2030 1.7796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052614726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:11 Heat of formation + Delta-G solvation = -42.215858 kcal Electronic energy + Delta-G solvation = -31622.598804 eV Core-core repulsion = 27614.658796 eV Total energy + Delta-G solvation = -4007.940007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.93549 -40.55538 -39.17577 -38.59062 -36.21398 -34.28102 -33.98081 -32.86187 -32.62562 -32.18546 -30.43709 -28.11157 -27.27020 -25.47054 -24.93816 -24.76686 -23.49917 -21.91747 -21.62738 -21.01986 -20.75278 -18.64501 -18.54635 -18.27332 -17.46313 -16.90453 -16.81094 -16.53376 -16.36803 -15.80337 -15.75544 -15.53902 -15.39322 -15.15169 -14.80366 -14.64891 -14.57713 -14.16695 -13.76472 -13.62039 -13.53594 -13.47052 -13.14510 -13.06395 -12.90284 -12.76595 -12.66703 -12.56517 -12.22813 -12.06588 -11.87378 -11.75470 -11.66028 -11.60945 -11.20212 -11.04216 -10.92394 -10.77670 -10.52633 -9.92464 -9.77960 -9.60797 -8.58206 -7.79413 -5.30126 0.25232 0.39353 1.47540 1.48358 1.50245 1.58452 2.17697 2.48537 2.54401 2.78216 3.34761 3.48183 3.57973 3.65788 3.85678 3.89655 4.01166 4.08094 4.12489 4.18424 4.23809 4.27416 4.34081 4.53479 4.54105 4.58499 4.62975 4.68283 4.72250 4.84824 4.86535 4.94374 4.95950 5.01979 5.08896 5.16802 5.20428 5.23277 5.31458 5.37512 5.46435 5.52638 5.53556 5.56064 5.63458 5.69367 5.70551 5.87894 6.02845 6.08901 6.46365 6.58585 7.17933 7.20151 7.89444 8.44205 9.24191 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.003241 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.178086 B = 8638.228968 C = 9332.928340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.039 4.039 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.148 3.852 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.157 3.843 14 H 0.072 0.928 15 N -0.696 5.696 16 C 0.526 3.474 17 O -0.570 6.570 18 C 0.131 3.869 19 H 0.113 0.887 20 O -0.381 6.381 21 C 0.054 3.946 22 C -0.114 4.114 23 C -0.075 4.075 24 C -0.126 4.126 25 C -0.113 4.113 26 C -0.138 4.138 27 C -0.125 4.125 28 C -0.134 4.134 29 C -0.112 4.112 30 C 0.177 3.823 31 H 0.247 0.753 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.413 0.587 39 H 0.132 0.868 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.133 0.867 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.011 0.989 49 H 0.060 0.940 50 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.061 -12.138 -4.055 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.235 4.235 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.020 3.980 11 C -0.172 4.172 12 C -0.141 4.141 13 C 0.053 3.947 14 H 0.090 0.910 15 N -0.346 5.346 16 C 0.312 3.688 17 O -0.451 6.451 18 C 0.070 3.930 19 H 0.130 0.870 20 O -0.300 6.300 21 C -0.021 4.021 22 C -0.151 4.151 23 C -0.075 4.075 24 C -0.144 4.144 25 C -0.131 4.131 26 C -0.156 4.156 27 C -0.143 4.143 28 C -0.135 4.135 29 C -0.152 4.152 30 C 0.053 3.947 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.250 0.750 39 H 0.149 0.851 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.135 0.865 43 H 0.170 0.830 44 H 0.167 0.833 45 H 0.151 0.849 46 H 0.138 0.862 47 H 0.099 0.901 48 H 0.030 0.970 49 H 0.078 0.922 50 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -17.602 -12.155 -3.480 21.673 hybrid contribution 0.313 1.214 0.227 1.274 sum -17.290 -10.942 -3.253 20.718 Atomic orbital electron populations 1.70064 1.06012 1.25080 1.55451 1.25704 0.96162 1.00731 1.00923 0.85350 0.77936 0.80145 0.77363 1.21222 1.22189 1.20147 1.19428 0.91009 0.85189 1.43546 0.91926 1.44235 1.28499 1.04168 1.55386 1.20568 0.96650 0.87930 0.92818 1.22711 0.94694 1.00352 0.99453 1.21533 0.95887 1.00883 0.95781 1.20186 0.82367 0.94931 0.97218 0.90962 1.46097 1.18462 1.46844 1.23148 1.20429 0.87395 0.78249 0.82768 1.90662 1.67018 1.58533 1.28844 1.20809 0.89276 0.99586 0.83378 0.86987 1.87986 1.28598 1.85107 1.28327 1.23006 0.78615 0.98727 1.01763 1.21248 1.02087 1.01997 0.89767 1.19786 0.93021 0.97197 0.97477 1.21249 1.00703 0.99867 0.92550 1.21371 0.96226 0.98138 0.97317 1.21374 0.95163 0.99142 0.99933 1.21532 1.00173 0.99417 0.93209 1.19732 0.96237 1.03256 0.94300 1.21112 0.96739 0.97304 1.00039 1.19872 0.85570 0.97755 0.91505 0.94392 0.94735 0.94988 0.90558 0.92939 0.90881 0.93334 0.74994 0.85060 0.91028 0.89393 0.86535 0.82951 0.83283 0.84929 0.86188 0.90145 0.96987 0.92185 0.97727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.22 9.08 21.65 0.20 -52.02 16 2 C -0.04 -2.16 5.10 84.86 0.43 -1.73 16 3 Si 0.96 44.82 29.57 68.60 2.03 46.85 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.26 -14.36 9.62 84.03 0.81 -13.55 16 8 H 0.06 3.40 7.85 -2.91 -0.02 3.37 16 9 N -0.60 -30.61 2.59 -707.90 -1.83 -32.44 16 10 C 0.15 6.38 5.18 87.58 0.45 6.83 16 11 C -0.13 -4.81 6.40 31.86 0.20 -4.61 16 12 C -0.10 -3.83 5.30 30.30 0.16 -3.67 16 13 C 0.16 6.20 2.27 43.91 0.10 6.30 16 14 H 0.07 3.09 5.65 -2.39 -0.01 3.08 16 15 N -0.70 -23.51 4.90 -447.71 -2.19 -25.70 16 16 C 0.53 17.91 6.87 87.66 0.60 18.51 16 17 O -0.57 -23.17 14.39 -3.02 -0.04 -23.22 16 18 C 0.13 3.42 3.23 29.09 0.09 3.51 16 19 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 20 O -0.38 -8.36 9.17 -148.98 -1.37 -9.72 16 21 C 0.05 0.74 6.85 71.97 0.49 1.24 16 22 C -0.11 -1.61 6.00 29.85 0.18 -1.43 16 23 C -0.07 -1.60 5.77 -19.90 -0.11 -1.71 16 24 C -0.13 -2.38 9.64 22.16 0.21 -2.16 16 25 C -0.11 -2.28 10.02 22.08 0.22 -2.06 16 26 C -0.14 -3.46 10.05 22.23 0.22 -3.24 16 27 C -0.13 -3.72 9.06 22.32 0.20 -3.52 16 28 C -0.13 -3.60 5.45 -19.91 -0.11 -3.71 16 29 C -0.11 -5.27 4.71 28.35 0.13 -5.14 16 30 C 0.18 9.07 5.24 83.58 0.44 9.51 16 31 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 32 H 0.03 1.45 8.00 -2.39 -0.02 1.43 16 33 H 0.03 1.34 6.88 -2.39 -0.02 1.32 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 2.26 7.86 -2.39 -0.02 2.24 16 37 H 0.05 2.15 6.83 -2.39 -0.02 2.13 16 38 H 0.41 12.28 7.33 -92.71 -0.68 11.60 16 39 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.81 8.07 -2.39 -0.02 0.79 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 44 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 46 H 0.12 4.10 5.83 -2.91 -0.02 4.08 16 47 H 0.08 4.22 5.13 -2.39 -0.01 4.20 16 48 H 0.01 0.56 8.02 -2.38 -0.02 0.54 16 49 H 0.06 3.43 6.15 -2.39 -0.01 3.42 16 50 H 0.00 0.24 8.12 -2.39 -0.02 0.22 16 Total: -1.00 -67.67 380.83 1.80 -65.87 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.27 Total: 31.01 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 4.74 Total: -0.63 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -3.83 Total: -110.16 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.41 Total: -32.94 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.67 1.80 -65.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052614726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.651 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds