Wall clock time and date at job start Wed Apr 1 2020 02:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99597 * 2 1 4 4 H 1.48496 * 109.46870 * 239.99312 * 3 2 1 5 5 H 1.48495 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46684 * 120.00112 * 3 2 1 7 7 C 1.38803 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99919 * 191.18112 * 7 2 1 9 9 N 1.36935 * 120.00401 * 11.18229 * 7 2 1 10 10 C 1.44581 * 118.64786 * 210.38200 * 9 7 2 11 11 C 1.54858 * 109.60416 * 270.70547 * 10 9 7 12 12 C 1.47098 * 110.32267 * 288.73273 * 11 10 9 13 13 C 1.52574 * 114.32580 * 62.79723 * 12 11 10 14 14 H 1.08998 * 109.48607 * 34.95330 * 13 12 11 15 15 N 1.46495 * 109.48950 * 155.02495 * 13 12 11 16 16 C 1.34774 * 119.99820 * 204.89064 * 15 13 12 17 17 O 1.21283 * 120.00217 * 4.28833 * 16 15 13 18 18 C 1.50703 * 119.99682 * 184.29684 * 16 15 13 19 19 H 1.08995 * 109.43796 * 329.22591 * 18 16 15 20 20 C 1.53071 * 109.43336 * 209.35820 * 18 16 15 21 21 C 1.53413 * 108.30226 * 191.74146 * 20 18 16 22 22 O 1.42819 * 108.37226 * 64.71381 * 21 20 18 23 23 C 1.35848 * 117.85821 * 310.79280 * 22 21 20 24 24 C 1.39141 * 118.49765 * 196.97883 * 23 22 21 25 25 C 1.37968 * 120.21708 * 180.40073 * 24 23 22 26 26 C 1.38291 * 119.95356 * 0.02562 * 25 24 23 27 27 C 1.38104 * 119.98619 * 359.93913 * 26 25 24 28 28 C 1.38369 * 121.80441 * 17.26381 * 23 22 21 29 29 C 1.50882 * 109.35651 * 274.99011 * 13 12 11 30 30 C 1.47606 * 118.64231 * 30.36264 * 9 7 2 31 31 H 0.96999 * 120.00023 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.44256 * 30.74454 * 10 9 7 33 33 H 1.08995 * 109.45242 * 150.68959 * 10 9 7 34 34 H 1.09005 * 109.33477 * 48.98943 * 11 10 9 35 35 H 1.08996 * 109.33357 * 168.46764 * 11 10 9 36 36 H 1.08991 * 108.51553 * 184.05315 * 12 11 10 37 37 H 1.08996 * 108.50995 * 301.54879 * 12 11 10 38 38 H 0.97004 * 120.00289 * 24.88525 * 15 13 12 39 39 H 1.09001 * 109.69994 * 311.44607 * 20 18 16 40 40 H 1.08997 * 109.69661 * 72.04079 * 20 18 16 41 41 H 1.09006 * 109.67984 * 304.98972 * 21 20 18 42 42 H 1.09001 * 109.71506 * 184.45710 * 21 20 18 43 43 H 1.08001 * 119.89322 * 0.39395 * 24 23 22 44 44 H 1.08005 * 120.02326 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.00383 * 179.97438 * 26 25 24 46 46 H 1.07996 * 119.84103 * 180.02562 * 27 26 25 47 47 H 1.08997 * 109.36994 * 331.69955 * 29 13 12 48 48 H 1.08999 * 109.36059 * 212.07413 * 29 13 12 49 49 H 1.08995 * 108.94797 * 17.20131 * 30 9 7 50 50 H 1.09009 * 108.87344 * 258.53016 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0749 -1.2109 0.1819 9 7 1.3451 -2.3769 -0.2289 10 6 1.8396 -3.5859 0.3909 11 6 2.8748 -4.2618 -0.5415 12 6 2.2032 -4.8435 -1.7139 13 6 1.5006 -3.8242 -2.6057 14 1 2.0730 -2.8967 -2.6188 15 7 1.3975 -4.3549 -3.9672 16 6 1.2931 -3.5113 -5.0131 17 8 1.3626 -2.3135 -4.8355 18 6 1.0897 -4.0563 -6.4033 19 1 1.5720 -5.0303 -6.4852 20 6 1.7076 -3.0957 -7.4224 21 6 1.2374 -3.5107 -8.8224 22 8 -0.1773 -3.3280 -8.8947 23 6 -0.9357 -3.8410 -7.8911 24 6 -2.3019 -3.9960 -8.1041 25 6 -3.1068 -4.5058 -7.1063 26 6 -2.5554 -4.8638 -5.8897 27 6 -1.1996 -4.7120 -5.6750 28 6 -0.3863 -4.2030 -6.6739 29 6 0.1182 -3.5550 -2.0643 30 6 0.1526 -2.3566 -1.0985 31 1 -0.4850 0.8400 -0.0004 32 1 2.3136 -3.3389 1.3409 33 1 1.0091 -4.2695 0.5666 34 1 3.6007 -3.5194 -0.8732 35 1 3.3927 -5.0497 0.0053 36 1 2.9459 -5.3722 -2.3113 37 1 1.4652 -5.5664 -1.3666 38 1 1.4044 -5.3134 -4.1161 39 1 1.3813 -2.0772 -7.2121 40 1 2.7948 -3.1522 -7.3683 41 1 1.4816 -4.5588 -8.9961 42 1 1.7266 -2.8905 -9.5735 43 1 -2.7338 -3.7162 -9.0537 44 1 -4.1670 -4.6243 -7.2749 45 1 -3.1848 -5.2626 -5.1078 46 1 -0.7713 -4.9928 -4.7242 47 1 -0.2402 -4.4368 -1.5334 48 1 -0.5569 -3.3337 -2.8910 49 1 0.1535 -1.4340 -1.6790 50 1 -0.7402 -2.3801 -0.4734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052795089.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:14 Heat of formation + Delta-G solvation = -29.538142 kcal Electronic energy + Delta-G solvation = -31557.688957 eV Core-core repulsion = 27550.298696 eV Total energy + Delta-G solvation = -4007.390260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.17682 -39.48039 -37.66266 -37.61767 -34.68488 -34.29016 -32.82457 -31.02910 -30.77938 -30.32998 -30.28883 -26.81293 -25.77182 -24.15092 -23.67309 -23.25956 -22.63709 -20.82578 -20.23927 -19.59577 -19.21276 -18.07350 -16.93077 -16.83733 -16.56650 -16.23341 -15.89980 -15.14903 -15.00462 -14.64089 -14.39143 -14.21051 -13.90366 -13.81306 -13.58964 -13.42727 -13.22772 -13.12206 -12.88662 -12.56032 -12.40121 -12.04536 -11.87133 -11.66916 -11.57448 -11.19713 -11.04446 -11.03117 -10.85104 -10.75919 -10.73037 -10.39780 -10.19645 -10.05092 -9.93925 -9.66494 -9.55883 -9.54593 -8.89555 -8.71084 -8.31294 -8.28120 -6.53275 -5.69190 -3.18229 1.14428 1.31229 2.81865 3.09579 3.32173 3.45031 3.50667 3.52598 3.67483 4.34330 4.45675 4.52944 4.57966 4.74039 4.92379 4.96209 5.00293 5.06526 5.17607 5.26674 5.31715 5.33101 5.36693 5.40288 5.52907 5.58943 5.69685 5.76129 5.86031 5.98965 6.02145 6.12746 6.14451 6.22594 6.29371 6.31384 6.41989 6.46614 6.51376 6.61530 6.63782 6.70821 6.79353 6.88500 7.02673 7.09248 7.27610 7.50635 7.74452 7.80410 7.91149 8.47804 8.58674 9.33514 9.98914 10.44952 11.38009 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003305 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.965372 B = 8468.976695 C = 8830.283558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.011 3.989 3 Si 0.900 3.100 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.262 4.262 8 H 0.062 0.938 9 N -0.590 5.590 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.105 4.105 13 C 0.153 3.847 14 H 0.103 0.897 15 N -0.728 5.728 16 C 0.519 3.481 17 O -0.517 6.517 18 C -0.063 4.063 19 H 0.098 0.902 20 C -0.148 4.148 21 C 0.065 3.935 22 O -0.316 6.316 23 C 0.140 3.860 24 C -0.152 4.152 25 C -0.085 4.085 26 C -0.149 4.149 27 C -0.080 4.080 28 C -0.149 4.149 29 C -0.147 4.147 30 C 0.185 3.815 31 H 0.253 0.747 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.391 0.609 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.075 0.925 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -15.191 -16.060 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.392 4.392 8 H 0.080 0.920 9 N -0.311 5.311 10 C 0.029 3.971 11 C -0.187 4.187 12 C -0.143 4.143 13 C 0.050 3.950 14 H 0.121 0.879 15 N -0.379 5.379 16 C 0.303 3.697 17 O -0.391 6.391 18 C -0.084 4.084 19 H 0.116 0.884 20 C -0.186 4.186 21 C -0.010 4.010 22 O -0.230 6.230 23 C 0.095 3.905 24 C -0.170 4.170 25 C -0.103 4.103 26 C -0.167 4.167 27 C -0.099 4.099 28 C -0.151 4.151 29 C -0.187 4.187 30 C 0.059 3.941 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.224 0.776 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.093 0.907 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.817 -14.048 -16.068 21.359 hybrid contribution 0.601 0.267 0.102 0.665 sum -0.216 -13.781 -15.966 21.092 Atomic orbital electron populations 1.70004 1.05254 1.25505 1.53965 1.25112 0.95292 0.98323 1.00086 0.86409 0.78963 0.83560 0.78039 1.20938 1.21643 1.20933 1.19095 0.91031 0.84435 1.44645 0.92043 1.43618 1.31461 1.03543 1.52519 1.20693 0.94000 0.88699 0.93723 1.21451 1.00294 0.99711 0.97209 1.20558 0.99115 0.97589 0.97072 1.20554 0.97790 0.98413 0.78275 0.87876 1.46433 1.74977 1.09176 1.07336 1.20111 0.76716 0.87122 0.85715 1.90787 1.48146 1.14999 1.85195 1.20165 0.93386 1.00727 0.94130 0.88402 1.22169 1.01780 1.01311 0.93333 1.22989 0.78512 1.01697 0.97842 1.85984 1.19275 1.73848 1.43862 1.18631 0.90987 0.94151 0.86744 1.20568 0.90878 1.04631 1.00963 1.20958 0.99525 0.97006 0.92775 1.21038 0.94952 1.02973 0.97749 1.21100 0.93825 0.96831 0.98101 1.19353 0.94699 1.06603 0.94407 1.22465 0.95452 1.01010 0.99806 1.20918 0.88591 0.94369 0.90208 0.93648 0.93582 0.95059 0.92002 0.93069 0.93501 0.92843 0.77621 0.88505 0.89339 0.91762 0.87105 0.85203 0.85353 0.85633 0.85365 0.93581 0.92696 0.90698 0.95602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 11.01 55.49 0.61 -26.34 16 2 C 0.01 0.31 4.96 -17.43 -0.09 0.23 16 3 Si 0.90 22.64 29.57 -169.99 -5.03 17.61 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.26 -7.29 9.41 -15.06 -0.14 -7.43 16 8 H 0.06 1.68 7.85 -52.48 -0.41 1.27 16 9 N -0.59 -14.68 2.26 -172.09 -0.39 -15.07 16 10 C 0.16 3.22 5.66 -4.09 -0.02 3.20 16 11 C -0.15 -2.49 5.74 -28.58 -0.16 -2.65 16 12 C -0.11 -1.59 4.69 -29.78 -0.14 -1.73 16 13 C 0.15 2.68 2.10 -69.21 -0.15 2.54 16 14 H 0.10 2.33 6.86 -51.93 -0.36 1.97 16 15 N -0.73 -10.22 3.85 -55.06 -0.21 -10.43 16 16 C 0.52 8.20 5.85 -10.98 -0.06 8.13 16 17 O -0.52 -10.97 15.57 5.55 0.09 -10.88 16 18 C -0.06 -0.75 2.70 -92.85 -0.25 -1.00 16 19 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 20 C -0.15 -1.66 5.29 -26.48 -0.14 -1.80 16 21 C 0.06 0.59 7.03 37.37 0.26 0.85 16 22 O -0.32 -3.84 10.27 -19.26 -0.20 -4.04 16 23 C 0.14 1.79 6.47 -39.20 -0.25 1.54 16 24 C -0.15 -1.73 9.94 -39.35 -0.39 -2.12 16 25 C -0.08 -0.88 10.04 -39.66 -0.40 -1.28 16 26 C -0.15 -1.68 10.04 -39.61 -0.40 -2.07 16 27 C -0.08 -1.00 9.10 -39.53 -0.36 -1.36 16 28 C -0.15 -1.92 5.43 -104.44 -0.57 -2.49 16 29 C -0.15 -2.83 5.38 -27.30 -0.15 -2.98 16 30 C 0.18 4.54 4.64 -2.94 -0.01 4.53 16 31 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.05 0.96 7.99 -51.93 -0.41 0.55 16 33 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.61 8.04 -51.93 -0.42 0.19 16 37 H 0.05 0.74 7.36 -51.93 -0.38 0.36 16 38 H 0.39 4.06 8.48 -40.82 -0.35 3.71 16 39 H 0.10 1.38 7.44 -51.93 -0.39 1.00 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.13 1.55 6.40 -52.49 -0.34 1.21 16 47 H 0.05 0.80 7.32 -51.93 -0.38 0.42 16 48 H 0.05 1.07 7.84 -51.93 -0.41 0.67 16 49 H 0.07 2.15 6.49 -51.93 -0.34 1.81 16 50 H 0.03 0.69 7.99 -51.92 -0.41 0.27 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -33.66 387.77 -10.65 -44.31 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.95 Total: 4.91 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -3.42 Total: -5.92 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.01 Total: -51.84 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.11 Total: -14.92 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.66 -10.65 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052795089.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.772 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds