Wall clock time and date at job start Wed Apr 1 2020 02:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99597 * 2 1 4 4 H 1.48496 * 109.46870 * 239.99312 * 3 2 1 5 5 H 1.48495 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46684 * 120.00112 * 3 2 1 7 7 C 1.38803 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99919 * 191.18112 * 7 2 1 9 9 N 1.36935 * 120.00401 * 11.18229 * 7 2 1 10 10 C 1.44581 * 118.64786 * 210.38200 * 9 7 2 11 11 C 1.54858 * 109.60416 * 270.70547 * 10 9 7 12 12 C 1.47098 * 110.32267 * 288.73273 * 11 10 9 13 13 C 1.52574 * 114.32580 * 62.79723 * 12 11 10 14 14 H 1.08998 * 109.48607 * 34.95330 * 13 12 11 15 15 N 1.46495 * 109.48950 * 155.02495 * 13 12 11 16 16 C 1.34774 * 119.99820 * 204.89064 * 15 13 12 17 17 O 1.21283 * 120.00217 * 4.28833 * 16 15 13 18 18 C 1.50703 * 119.99682 * 184.29684 * 16 15 13 19 19 H 1.08995 * 109.43796 * 329.22591 * 18 16 15 20 20 C 1.53071 * 109.43336 * 209.35820 * 18 16 15 21 21 C 1.53413 * 108.30226 * 191.74146 * 20 18 16 22 22 O 1.42819 * 108.37226 * 64.71381 * 21 20 18 23 23 C 1.35848 * 117.85821 * 310.79280 * 22 21 20 24 24 C 1.39141 * 118.49765 * 196.97883 * 23 22 21 25 25 C 1.37968 * 120.21708 * 180.40073 * 24 23 22 26 26 C 1.38291 * 119.95356 * 0.02562 * 25 24 23 27 27 C 1.38104 * 119.98619 * 359.93913 * 26 25 24 28 28 C 1.38369 * 121.80441 * 17.26381 * 23 22 21 29 29 C 1.50882 * 109.35651 * 274.99011 * 13 12 11 30 30 C 1.47606 * 118.64231 * 30.36264 * 9 7 2 31 31 H 0.96999 * 120.00023 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.44256 * 30.74454 * 10 9 7 33 33 H 1.08995 * 109.45242 * 150.68959 * 10 9 7 34 34 H 1.09005 * 109.33477 * 48.98943 * 11 10 9 35 35 H 1.08996 * 109.33357 * 168.46764 * 11 10 9 36 36 H 1.08991 * 108.51553 * 184.05315 * 12 11 10 37 37 H 1.08996 * 108.50995 * 301.54879 * 12 11 10 38 38 H 0.97004 * 120.00289 * 24.88525 * 15 13 12 39 39 H 1.09001 * 109.69994 * 311.44607 * 20 18 16 40 40 H 1.08997 * 109.69661 * 72.04079 * 20 18 16 41 41 H 1.09006 * 109.67984 * 304.98972 * 21 20 18 42 42 H 1.09001 * 109.71506 * 184.45710 * 21 20 18 43 43 H 1.08001 * 119.89322 * 0.39395 * 24 23 22 44 44 H 1.08005 * 120.02326 * 179.97438 * 25 24 23 45 45 H 1.08001 * 120.00383 * 179.97438 * 26 25 24 46 46 H 1.07996 * 119.84103 * 180.02562 * 27 26 25 47 47 H 1.08997 * 109.36994 * 331.69955 * 29 13 12 48 48 H 1.08999 * 109.36059 * 212.07413 * 29 13 12 49 49 H 1.08995 * 108.94797 * 17.20131 * 30 9 7 50 50 H 1.09009 * 108.87344 * 258.53016 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0749 -1.2109 0.1819 9 7 1.3451 -2.3769 -0.2289 10 6 1.8396 -3.5859 0.3909 11 6 2.8748 -4.2618 -0.5415 12 6 2.2032 -4.8435 -1.7139 13 6 1.5006 -3.8242 -2.6057 14 1 2.0730 -2.8967 -2.6188 15 7 1.3975 -4.3549 -3.9672 16 6 1.2931 -3.5113 -5.0131 17 8 1.3626 -2.3135 -4.8355 18 6 1.0897 -4.0563 -6.4033 19 1 1.5720 -5.0303 -6.4852 20 6 1.7076 -3.0957 -7.4224 21 6 1.2374 -3.5107 -8.8224 22 8 -0.1773 -3.3280 -8.8947 23 6 -0.9357 -3.8410 -7.8911 24 6 -2.3019 -3.9960 -8.1041 25 6 -3.1068 -4.5058 -7.1063 26 6 -2.5554 -4.8638 -5.8897 27 6 -1.1996 -4.7120 -5.6750 28 6 -0.3863 -4.2030 -6.6739 29 6 0.1182 -3.5550 -2.0643 30 6 0.1526 -2.3566 -1.0985 31 1 -0.4850 0.8400 -0.0004 32 1 2.3136 -3.3389 1.3409 33 1 1.0091 -4.2695 0.5666 34 1 3.6007 -3.5194 -0.8732 35 1 3.3927 -5.0497 0.0053 36 1 2.9459 -5.3722 -2.3113 37 1 1.4652 -5.5664 -1.3666 38 1 1.4044 -5.3134 -4.1161 39 1 1.3813 -2.0772 -7.2121 40 1 2.7948 -3.1522 -7.3683 41 1 1.4816 -4.5588 -8.9961 42 1 1.7266 -2.8905 -9.5735 43 1 -2.7338 -3.7162 -9.0537 44 1 -4.1670 -4.6243 -7.2749 45 1 -3.1848 -5.2626 -5.1078 46 1 -0.7713 -4.9928 -4.7242 47 1 -0.2402 -4.4368 -1.5334 48 1 -0.5569 -3.3337 -2.8910 49 1 0.1535 -1.4340 -1.6790 50 1 -0.7402 -2.3801 -0.4734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052795089.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:13 Heat of formation + Delta-G solvation = -50.367093 kcal Electronic energy + Delta-G solvation = -31558.592168 eV Core-core repulsion = 27550.298696 eV Total energy + Delta-G solvation = -4008.293472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.14798 -40.72756 -39.19993 -38.46056 -36.35203 -35.32095 -34.45934 -32.72846 -32.16854 -31.53974 -31.19524 -28.16457 -27.26097 -25.53167 -25.14469 -24.64608 -23.60526 -21.99162 -21.59872 -21.01285 -20.63409 -19.00070 -18.55308 -17.98605 -17.80937 -17.30869 -17.14656 -16.77383 -16.17734 -15.96302 -15.74482 -15.57642 -15.23568 -15.03628 -14.84912 -14.72190 -14.42063 -14.28040 -14.21609 -13.98554 -13.59563 -13.42325 -13.24366 -13.01865 -12.92102 -12.74700 -12.55777 -12.49844 -12.16878 -12.08004 -12.04271 -11.84828 -11.76035 -11.63004 -11.52168 -11.38758 -11.34609 -10.84872 -10.47842 -10.06766 -9.80092 -9.15658 -8.59566 -7.86526 -5.37226 0.27086 0.43115 1.38890 1.44067 1.48486 1.58269 2.11588 2.35969 2.48453 2.77271 3.28522 3.41987 3.55850 3.66773 3.68789 3.80537 3.87642 4.07710 4.10170 4.12258 4.19632 4.34914 4.39492 4.46013 4.47908 4.50137 4.51279 4.51973 4.64485 4.69210 4.84369 4.88837 4.94274 5.00558 5.01718 5.08140 5.16428 5.22535 5.24931 5.29272 5.36216 5.42802 5.51259 5.56380 5.57497 5.63573 5.70556 5.76151 5.82576 6.41868 6.43703 6.58188 7.18801 7.30215 7.95829 8.34749 9.17597 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003305 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.965372 B = 8468.976695 C = 8830.283558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.958 3.042 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.265 4.265 8 H 0.062 0.938 9 N -0.603 5.603 10 C 0.148 3.852 11 C -0.132 4.132 12 C -0.103 4.103 13 C 0.163 3.837 14 H 0.047 0.953 15 N -0.708 5.708 16 C 0.517 3.483 17 O -0.581 6.581 18 C -0.054 4.054 19 H 0.138 0.862 20 C -0.148 4.148 21 C 0.065 3.935 22 O -0.331 6.331 23 C 0.123 3.877 24 C -0.162 4.162 25 C -0.083 4.083 26 C -0.158 4.158 27 C -0.097 4.097 28 C -0.166 4.166 29 C -0.130 4.130 30 C 0.198 3.802 31 H 0.246 0.754 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.415 0.585 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.133 0.867 43 H 0.145 0.855 44 H 0.157 0.843 45 H 0.143 0.857 46 H 0.129 0.871 47 H 0.077 0.923 48 H 0.046 0.954 49 H 0.021 0.979 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -18.662 -17.167 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.786 3.214 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.395 4.395 8 H 0.080 0.920 9 N -0.326 5.326 10 C 0.022 3.978 11 C -0.173 4.173 12 C -0.140 4.140 13 C 0.058 3.942 14 H 0.066 0.934 15 N -0.360 5.360 16 C 0.304 3.696 17 O -0.460 6.460 18 C -0.075 4.075 19 H 0.155 0.845 20 C -0.186 4.186 21 C -0.009 4.009 22 O -0.245 6.245 23 C 0.078 3.922 24 C -0.181 4.181 25 C -0.100 4.100 26 C -0.176 4.176 27 C -0.115 4.115 28 C -0.167 4.167 29 C -0.170 4.170 30 C 0.073 3.927 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.253 0.747 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.175 0.825 45 H 0.160 0.840 46 H 0.147 0.853 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.040 0.960 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 0.045 -17.607 -17.171 24.594 hybrid contribution 0.331 1.323 0.458 1.438 sum 0.376 -16.285 -16.713 23.338 Atomic orbital electron populations 1.70173 1.06552 1.25482 1.55878 1.25829 0.96054 1.01388 1.00946 0.85490 0.77768 0.79937 0.78201 1.21388 1.21995 1.19239 1.19417 0.91294 0.85854 1.42963 0.92017 1.43786 1.31186 1.04322 1.53268 1.20954 0.95374 0.87422 0.94063 1.21289 0.98731 0.99830 0.97437 1.20512 1.00372 0.96959 0.96182 1.20164 0.95900 0.97559 0.80559 0.93421 1.46148 1.73889 1.10324 1.05662 1.20858 0.75032 0.86320 0.87396 1.90773 1.50963 1.17974 1.86291 1.20197 0.93708 1.02394 0.91201 0.84461 1.22161 1.02807 0.98954 0.94721 1.23239 0.77109 1.03796 0.96788 1.85959 1.20688 1.74063 1.43788 1.18895 0.91768 0.94506 0.87066 1.20898 0.90671 1.04515 1.01971 1.21319 1.00888 0.95751 0.92082 1.21346 0.94814 1.02807 0.98635 1.21247 0.94600 0.97510 0.98117 1.19481 0.95097 1.07328 0.94821 1.22235 0.96866 0.99480 0.98428 1.20543 0.87595 0.94577 0.90027 0.94457 0.94444 0.93338 0.94644 0.89167 0.90113 0.90039 0.74743 0.92583 0.87593 0.89069 0.84911 0.83768 0.82534 0.83951 0.85293 0.90489 0.93549 0.96027 0.98589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.85 11.01 21.65 0.24 -58.61 16 2 C -0.05 -2.79 4.96 84.86 0.42 -2.36 16 3 Si 0.96 48.35 29.57 68.60 2.03 50.37 16 4 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 5 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.26 -15.24 9.41 84.03 0.79 -14.45 16 8 H 0.06 3.48 7.85 -2.91 -0.02 3.45 16 9 N -0.60 -30.86 2.26 -698.37 -1.58 -32.44 16 10 C 0.15 5.93 5.66 87.37 0.49 6.42 16 11 C -0.13 -4.17 5.74 29.39 0.17 -4.00 16 12 C -0.10 -2.72 4.69 28.62 0.13 -2.58 16 13 C 0.16 5.59 2.10 44.16 0.09 5.68 16 14 H 0.05 2.23 6.86 -2.39 -0.02 2.21 16 15 N -0.71 -18.70 3.85 -446.51 -1.72 -20.42 16 16 C 0.52 16.32 5.85 87.66 0.51 16.83 16 17 O -0.58 -26.08 15.57 -3.04 -0.05 -26.13 16 18 C -0.05 -1.22 2.70 -12.24 -0.03 -1.26 16 19 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 20 C -0.15 -3.24 5.29 30.76 0.16 -3.08 16 21 C 0.06 1.06 7.03 72.12 0.51 1.56 16 22 O -0.33 -7.70 10.27 -91.84 -0.94 -8.65 16 23 C 0.12 3.04 6.47 22.52 0.15 3.18 16 24 C -0.16 -3.49 9.94 22.42 0.22 -3.26 16 25 C -0.08 -1.57 10.04 22.22 0.22 -1.35 16 26 C -0.16 -3.31 10.04 22.25 0.22 -3.08 16 27 C -0.10 -2.30 9.10 22.30 0.20 -2.09 16 28 C -0.17 -4.10 5.43 -19.75 -0.11 -4.21 16 29 C -0.13 -5.01 5.38 30.23 0.16 -4.85 16 30 C 0.20 10.25 4.64 86.49 0.40 10.65 16 31 H 0.25 15.19 8.31 -92.71 -0.77 14.41 16 32 H 0.04 1.54 7.99 -2.39 -0.02 1.52 16 33 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 34 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 37 H 0.08 1.80 7.36 -2.39 -0.02 1.79 16 38 H 0.41 7.09 8.48 -92.71 -0.79 6.30 16 39 H 0.06 1.69 7.44 -2.39 -0.02 1.68 16 40 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 44 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.13 2.91 6.40 -2.91 -0.02 2.89 16 47 H 0.08 2.50 7.32 -2.39 -0.02 2.48 16 48 H 0.05 1.85 7.84 -2.39 -0.02 1.83 16 49 H 0.02 1.31 6.49 -2.39 -0.02 1.30 16 50 H 0.00 -0.22 7.99 -2.38 -0.02 -0.24 16 Total: -1.00 -81.28 387.77 2.86 -78.43 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.16 Total: 19.72 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 4.73 Total: -2.26 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -3.06 Total: -111.48 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.99 Total: -34.78 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.37 kcal Total: -81.28 2.86 -78.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052795089.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.059 kcal (2) G-P(sol) polarization free energy of solvation -81.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds