Wall clock time and date at job start Wed Apr 1 2020 02:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99962 * 2 1 4 4 H 1.48495 * 109.47070 * 269.99992 * 3 2 1 5 5 H 1.48502 * 109.46779 * 30.00261 * 3 2 1 6 6 H 1.48502 * 109.46856 * 149.99616 * 3 2 1 7 7 C 1.38807 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00496 * 160.41311 * 7 2 1 9 9 N 1.36940 * 119.99843 * 340.41067 * 7 2 1 10 10 C 1.43435 * 120.53558 * 156.74638 * 9 7 2 11 11 C 1.54903 * 116.07794 * 271.54457 * 10 9 7 12 12 C 1.54844 * 110.13914 * 318.64155 * 11 10 9 13 13 C 1.50123 * 110.81484 * 321.13162 * 12 11 10 14 14 H 1.09001 * 110.37214 * 338.64705 * 13 12 11 15 15 N 1.46504 * 110.24857 * 216.65809 * 13 12 11 16 16 C 1.34775 * 120.00147 * 159.02542 * 15 13 12 17 17 O 1.21283 * 119.99740 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00139 * 180.27486 * 16 15 13 19 19 C 1.53007 * 109.47027 * 179.71775 * 18 16 15 20 20 H 1.09002 * 110.12721 * 54.30008 * 19 18 16 21 21 O 1.43938 * 110.15689 * 292.59927 * 19 18 16 22 22 C 1.43936 * 104.94979 * 212.43482 * 21 19 18 23 23 C 1.51079 * 105.95705 * 28.44441 * 22 21 19 24 24 C 1.37967 * 132.68860 * 162.30680 * 23 22 21 25 25 C 1.38292 * 119.92463 * 179.97438 * 24 23 22 26 26 C 1.38271 * 120.03754 * 0.02562 * 25 24 23 27 27 C 1.38297 * 120.04098 * 359.97438 * 26 25 24 28 28 C 1.37877 * 119.95556 * 359.97170 * 27 26 25 29 29 C 1.52530 * 105.41390 * 97.68708 * 13 12 11 30 30 C 1.46236 * 114.27254 * 270.59159 * 29 13 12 31 31 H 0.97000 * 119.99746 * 359.97438 * 1 2 3 32 32 H 1.09003 * 108.15870 * 33.25939 * 10 9 7 33 33 H 1.09000 * 108.15806 * 149.82713 * 10 9 7 34 34 H 1.08993 * 109.35999 * 78.84561 * 11 10 9 35 35 H 1.09000 * 109.35648 * 198.57287 * 11 10 9 36 36 H 1.09005 * 109.20513 * 200.79025 * 12 11 10 37 37 H 1.08997 * 109.21305 * 81.48005 * 12 11 10 38 38 H 0.96998 * 120.00253 * 339.01980 * 15 13 12 39 39 H 1.08996 * 109.47077 * 299.71963 * 18 16 15 40 40 H 1.08998 * 109.47109 * 59.71976 * 18 16 15 41 41 H 1.09002 * 110.15446 * 147.56691 * 22 21 19 42 42 H 1.09004 * 110.15447 * 269.25087 * 22 21 19 43 43 H 1.08005 * 120.04076 * 0.02622 * 24 23 22 44 44 H 1.07999 * 119.98491 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.98090 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.03893 * 180.02562 * 27 26 25 47 47 H 1.08997 * 108.51828 * 31.83266 * 29 13 12 48 48 H 1.08999 * 108.52282 * 149.50766 * 29 13 12 49 49 H 1.09000 * 109.84358 * 177.91739 * 30 29 13 50 50 H 1.08998 * 109.84855 * 298.82918 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2291 -0.3141 9 7 1.3850 -2.3539 0.3966 10 6 1.8652 -3.6323 -0.0422 11 6 1.2876 -4.1535 -1.3817 12 6 -0.2312 -3.8614 -1.4570 13 6 -0.8819 -4.0721 -0.1206 14 1 -0.2686 -4.7241 0.5014 15 7 -2.2184 -4.6470 -0.2925 16 6 -2.8071 -5.3010 0.7284 17 8 -2.2301 -5.4140 1.7892 18 6 -4.1793 -5.8976 0.5497 19 6 -4.6098 -6.5842 1.8475 20 1 -4.5410 -5.8861 2.6818 21 8 -3.7848 -7.7372 2.0961 22 6 -4.6490 -8.6754 2.7629 23 6 -6.0460 -8.3739 2.2730 24 6 -7.2208 -9.0971 2.2932 25 6 -8.3748 -8.5536 1.7589 26 6 -8.3511 -7.2870 1.2046 27 6 -7.1736 -6.5621 1.1844 28 6 -6.0229 -7.1028 1.7179 29 6 -0.9804 -2.6848 0.5055 30 6 0.1859 -2.2991 1.2989 31 1 -0.4850 0.8401 0.0004 32 1 2.9492 -3.5727 -0.1399 33 1 1.6391 -4.3644 0.7331 34 1 1.7925 -3.6572 -2.2103 35 1 1.4506 -5.2290 -1.4513 36 1 -0.6887 -4.5282 -2.1879 37 1 -0.3827 -2.8286 -1.7708 38 1 -2.6797 -4.5568 -1.1410 39 1 -4.8894 -5.1083 0.3033 40 1 -4.1549 -6.6295 -0.2577 41 1 -4.3705 -9.6957 2.4989 42 1 -4.5907 -8.5380 3.8426 43 1 -7.2394 -10.0862 2.7265 44 1 -9.2950 -9.1187 1.7745 45 1 -9.2527 -6.8637 0.7873 46 1 -7.1552 -5.5726 0.7518 47 1 -1.1141 -1.9537 -0.2918 48 1 -1.8591 -2.6573 1.1499 49 1 0.0557 -1.2862 1.6800 50 1 0.3145 -2.9930 2.1295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052904801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:47 Heat of formation + Delta-G solvation = -17.437590 kcal Electronic energy + Delta-G solvation = -30443.869269 eV Core-core repulsion = 26437.003728 eV Total energy + Delta-G solvation = -4006.865541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.06771 -39.48724 -37.77670 -37.27711 -34.47157 -32.92703 -32.38962 -31.53327 -31.01444 -30.53604 -29.91084 -26.63663 -25.87479 -24.58840 -23.57390 -23.04405 -21.87884 -21.34730 -19.99739 -19.87442 -19.04891 -17.38428 -16.77174 -16.63624 -16.31965 -16.05240 -15.75747 -15.40924 -14.97333 -14.81898 -14.28822 -13.95890 -13.88158 -13.73786 -13.66246 -13.32829 -13.22001 -13.08929 -12.65970 -12.48434 -12.30708 -12.01734 -11.84904 -11.68584 -11.51016 -11.34063 -11.17373 -11.16686 -10.73724 -10.70490 -10.30093 -10.15853 -10.13810 -9.91156 -9.75843 -9.47628 -9.40326 -9.22333 -9.18930 -8.84866 -8.57251 -8.24415 -6.66105 -5.74660 -3.13052 0.89373 0.99089 3.02235 3.31623 3.39978 3.47668 3.50901 3.53746 3.73298 3.92240 4.36234 4.54897 4.56604 4.66193 4.79861 4.99863 5.04200 5.11858 5.20969 5.22790 5.25588 5.38785 5.45738 5.51497 5.54978 5.67956 5.68393 5.74404 5.76391 5.83532 6.01755 6.08657 6.11130 6.19457 6.34316 6.38208 6.53315 6.54219 6.63531 6.65747 6.73781 6.91585 6.95731 6.99010 7.15359 7.19299 7.36509 7.65421 7.78639 7.94384 8.02481 8.47708 8.65657 9.23954 9.92140 10.46017 11.32546 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.002224 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.012577 B =12588.798072 C =13065.940925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.000 4.000 3 Si 0.899 3.101 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.154 3.846 11 C -0.140 4.140 12 C -0.112 4.112 13 C 0.147 3.853 14 H 0.082 0.918 15 N -0.723 5.723 16 C 0.510 3.490 17 O -0.529 6.529 18 C -0.139 4.139 19 C 0.139 3.861 20 H 0.094 0.906 21 O -0.338 6.338 22 C 0.086 3.914 23 C -0.129 4.129 24 C -0.096 4.096 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.092 4.092 28 C -0.124 4.124 29 C -0.131 4.131 30 C 0.169 3.831 31 H 0.251 0.749 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.392 0.608 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.101 0.899 48 H 0.028 0.972 49 H 0.090 0.910 50 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.471 -16.883 0.386 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.198 4.198 3 Si 0.729 3.271 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.025 3.975 11 C -0.181 4.181 12 C -0.150 4.150 13 C 0.044 3.956 14 H 0.100 0.900 15 N -0.373 5.373 16 C 0.296 3.704 17 O -0.405 6.405 18 C -0.179 4.179 19 C 0.081 3.919 20 H 0.112 0.888 21 O -0.256 6.256 22 C 0.010 3.990 23 C -0.129 4.129 24 C -0.114 4.114 25 C -0.135 4.135 26 C -0.135 4.135 27 C -0.110 4.110 28 C -0.124 4.124 29 C -0.170 4.170 30 C 0.045 3.955 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.225 0.775 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.119 0.881 48 H 0.047 0.953 49 H 0.108 0.892 50 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -16.882 -16.819 1.135 23.858 hybrid contribution -0.258 0.962 -0.626 1.177 sum -17.140 -15.857 0.508 23.356 Atomic orbital electron populations 1.69971 1.05057 1.25055 1.54558 1.24880 0.95234 0.98124 1.01525 0.86352 0.79257 0.83990 0.77496 1.21698 1.21722 1.20693 1.19202 0.93569 0.85395 1.39237 0.91587 1.44262 1.33743 1.00869 1.52097 1.20429 0.96389 0.88247 0.92441 1.22828 0.95015 0.98408 1.01868 1.21689 0.96017 1.02298 0.94989 1.20466 0.81182 0.96043 0.97916 0.89981 1.46279 1.19648 1.56493 1.14898 1.20286 0.87390 0.78374 0.84400 1.90728 1.64923 1.58434 1.26397 1.21827 0.96136 1.01185 0.98720 1.21037 0.84380 0.88892 0.97566 0.88819 1.89261 1.31871 1.25829 1.78648 1.21782 0.85007 0.94959 0.97268 1.21178 0.96435 0.95657 0.99628 1.20407 0.91260 0.99725 1.00039 1.21146 0.97953 0.95826 0.98567 1.21155 0.97756 0.94823 0.99726 1.20447 0.91224 1.00208 0.99084 1.21099 0.96053 0.95653 0.99590 1.21312 0.98750 0.94730 1.02227 1.20094 0.84991 1.00482 0.89967 0.93884 0.94923 0.95249 0.92702 0.93724 0.94191 0.90175 0.77460 0.87755 0.88299 0.88632 0.90458 0.85750 0.85538 0.85432 0.85521 0.88118 0.95333 0.89185 0.97261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 9.43 55.49 0.52 -24.26 16 2 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 3 Si 0.90 21.54 29.60 -169.99 -5.03 16.51 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.60 9.63 -15.06 -0.14 -6.75 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.66 2.60 -175.09 -0.46 -15.12 16 10 C 0.15 3.33 5.17 -4.66 -0.02 3.30 16 11 C -0.14 -2.64 6.41 -24.76 -0.16 -2.80 16 12 C -0.11 -2.07 5.30 -27.19 -0.14 -2.21 16 13 C 0.15 2.81 2.17 -69.60 -0.15 2.66 16 14 H 0.08 1.75 5.84 -51.93 -0.30 1.45 16 15 N -0.72 -11.29 5.01 -55.44 -0.28 -11.57 16 16 C 0.51 8.23 7.59 -10.99 -0.08 8.15 16 17 O -0.53 -10.84 15.26 -5.10 -0.08 -10.92 16 18 C -0.14 -1.61 5.36 -27.88 -0.15 -1.76 16 19 C 0.14 1.74 2.84 -27.69 -0.08 1.66 16 20 H 0.09 1.28 7.95 -51.93 -0.41 0.87 16 21 O -0.34 -4.80 10.82 -45.88 -0.50 -5.30 16 22 C 0.09 0.90 7.63 36.19 0.28 1.17 16 23 C -0.13 -1.28 6.33 -104.36 -0.66 -1.94 16 24 C -0.10 -0.77 10.04 -39.66 -0.40 -1.17 16 25 C -0.12 -0.84 10.05 -39.55 -0.40 -1.24 16 26 C -0.12 -0.86 10.05 -39.55 -0.40 -1.26 16 27 C -0.09 -0.79 9.79 -39.69 -0.39 -1.18 16 28 C -0.12 -1.30 5.73 -104.39 -0.60 -1.89 16 29 C -0.13 -2.90 4.73 -30.19 -0.14 -3.04 16 30 C 0.17 4.13 5.24 -5.21 -0.03 4.11 16 31 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.03 0.69 7.99 -51.93 -0.41 0.28 16 33 H 0.03 0.62 6.90 -51.93 -0.36 0.26 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 37 H 0.08 1.72 6.83 -51.93 -0.35 1.36 16 38 H 0.39 4.89 8.45 -40.82 -0.34 4.55 16 39 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.13 0.88 7.90 -52.49 -0.41 0.46 16 47 H 0.10 2.48 5.29 -51.93 -0.27 2.20 16 48 H 0.03 0.63 7.90 -51.93 -0.41 0.22 16 49 H 0.09 2.44 6.05 -51.93 -0.31 2.12 16 50 H 0.01 0.22 8.13 -51.93 -0.42 -0.20 16 LS Contribution 388.99 15.07 5.86 5.86 Total: -1.00 -32.03 388.99 -11.48 -43.51 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.77 Total: 5.55 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.75 Total: -4.27 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.21 Total: -50.95 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.57 Total: -16.21 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.03 -11.48 -43.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052904801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds