Wall clock time and date at job start Wed Apr 1 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99962 * 2 1 4 4 H 1.48495 * 109.47070 * 269.99992 * 3 2 1 5 5 H 1.48502 * 109.46779 * 30.00261 * 3 2 1 6 6 H 1.48502 * 109.46856 * 149.99616 * 3 2 1 7 7 C 1.38807 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00496 * 160.41311 * 7 2 1 9 9 N 1.36940 * 119.99843 * 340.41067 * 7 2 1 10 10 C 1.43435 * 120.53558 * 156.74638 * 9 7 2 11 11 C 1.54903 * 116.07794 * 271.54457 * 10 9 7 12 12 C 1.54844 * 110.13914 * 318.64155 * 11 10 9 13 13 C 1.50123 * 110.81484 * 321.13162 * 12 11 10 14 14 H 1.09001 * 110.37214 * 338.64705 * 13 12 11 15 15 N 1.46504 * 110.24857 * 216.65809 * 13 12 11 16 16 C 1.34775 * 120.00147 * 159.02542 * 15 13 12 17 17 O 1.21283 * 119.99740 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00139 * 180.27486 * 16 15 13 19 19 C 1.53007 * 109.47027 * 179.71775 * 18 16 15 20 20 H 1.09002 * 110.12721 * 54.30008 * 19 18 16 21 21 O 1.43938 * 110.15689 * 292.59927 * 19 18 16 22 22 C 1.43936 * 104.94979 * 212.43482 * 21 19 18 23 23 C 1.51079 * 105.95705 * 28.44441 * 22 21 19 24 24 C 1.37967 * 132.68860 * 162.30680 * 23 22 21 25 25 C 1.38292 * 119.92463 * 179.97438 * 24 23 22 26 26 C 1.38271 * 120.03754 * 0.02562 * 25 24 23 27 27 C 1.38297 * 120.04098 * 359.97438 * 26 25 24 28 28 C 1.37877 * 119.95556 * 359.97170 * 27 26 25 29 29 C 1.52530 * 105.41390 * 97.68708 * 13 12 11 30 30 C 1.46236 * 114.27254 * 270.59159 * 29 13 12 31 31 H 0.97000 * 119.99746 * 359.97438 * 1 2 3 32 32 H 1.09003 * 108.15870 * 33.25939 * 10 9 7 33 33 H 1.09000 * 108.15806 * 149.82713 * 10 9 7 34 34 H 1.08993 * 109.35999 * 78.84561 * 11 10 9 35 35 H 1.09000 * 109.35648 * 198.57287 * 11 10 9 36 36 H 1.09005 * 109.20513 * 200.79025 * 12 11 10 37 37 H 1.08997 * 109.21305 * 81.48005 * 12 11 10 38 38 H 0.96998 * 120.00253 * 339.01980 * 15 13 12 39 39 H 1.08996 * 109.47077 * 299.71963 * 18 16 15 40 40 H 1.08998 * 109.47109 * 59.71976 * 18 16 15 41 41 H 1.09002 * 110.15446 * 147.56691 * 22 21 19 42 42 H 1.09004 * 110.15447 * 269.25087 * 22 21 19 43 43 H 1.08005 * 120.04076 * 0.02622 * 24 23 22 44 44 H 1.07999 * 119.98491 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.98090 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.03893 * 180.02562 * 27 26 25 47 47 H 1.08997 * 108.51828 * 31.83266 * 29 13 12 48 48 H 1.08999 * 108.52282 * 149.50766 * 29 13 12 49 49 H 1.09000 * 109.84358 * 177.91739 * 30 29 13 50 50 H 1.08998 * 109.84855 * 298.82918 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2291 -0.3141 9 7 1.3850 -2.3539 0.3966 10 6 1.8652 -3.6323 -0.0422 11 6 1.2876 -4.1535 -1.3817 12 6 -0.2312 -3.8614 -1.4570 13 6 -0.8819 -4.0721 -0.1206 14 1 -0.2686 -4.7241 0.5014 15 7 -2.2184 -4.6470 -0.2925 16 6 -2.8071 -5.3010 0.7284 17 8 -2.2301 -5.4140 1.7892 18 6 -4.1793 -5.8976 0.5497 19 6 -4.6098 -6.5842 1.8475 20 1 -4.5410 -5.8861 2.6818 21 8 -3.7848 -7.7372 2.0961 22 6 -4.6490 -8.6754 2.7629 23 6 -6.0460 -8.3739 2.2730 24 6 -7.2208 -9.0971 2.2932 25 6 -8.3748 -8.5536 1.7589 26 6 -8.3511 -7.2870 1.2046 27 6 -7.1736 -6.5621 1.1844 28 6 -6.0229 -7.1028 1.7179 29 6 -0.9804 -2.6848 0.5055 30 6 0.1859 -2.2991 1.2989 31 1 -0.4850 0.8401 0.0004 32 1 2.9492 -3.5727 -0.1399 33 1 1.6391 -4.3644 0.7331 34 1 1.7925 -3.6572 -2.2103 35 1 1.4506 -5.2290 -1.4513 36 1 -0.6887 -4.5282 -2.1879 37 1 -0.3827 -2.8286 -1.7708 38 1 -2.6797 -4.5568 -1.1410 39 1 -4.8894 -5.1083 0.3033 40 1 -4.1549 -6.6295 -0.2577 41 1 -4.3705 -9.6957 2.4989 42 1 -4.5907 -8.5380 3.8426 43 1 -7.2394 -10.0862 2.7265 44 1 -9.2950 -9.1187 1.7745 45 1 -9.2527 -6.8637 0.7873 46 1 -7.1552 -5.5726 0.7518 47 1 -1.1141 -1.9537 -0.2918 48 1 -1.8591 -2.6573 1.1499 49 1 0.0557 -1.2862 1.6800 50 1 0.3145 -2.9930 2.1295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052904801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:45 Heat of formation + Delta-G solvation = -35.945486 kcal Electronic energy + Delta-G solvation = -30444.671832 eV Core-core repulsion = 26437.003728 eV Total energy + Delta-G solvation = -4007.668104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.88203 -40.86222 -39.22659 -38.22100 -36.15649 -34.23651 -33.73876 -32.65359 -32.26174 -32.20573 -30.88077 -28.05511 -27.17171 -25.69384 -24.93489 -24.86012 -22.57689 -22.26311 -21.69464 -21.20787 -20.63105 -18.59049 -18.35692 -17.63864 -17.37375 -17.16458 -16.79128 -16.61626 -16.44536 -15.95891 -15.63886 -15.47752 -15.28688 -15.22974 -14.80708 -14.68703 -14.40597 -13.92094 -13.76184 -13.72259 -13.52582 -13.25468 -13.24605 -13.12626 -13.00985 -12.70961 -12.62433 -12.54492 -12.20327 -12.07005 -11.86101 -11.79859 -11.70750 -11.65208 -11.20476 -11.03391 -11.02674 -10.76470 -10.49558 -9.86584 -9.84002 -9.54191 -8.66623 -7.81225 -5.22081 0.26469 0.39754 1.47633 1.50935 1.59273 1.75316 2.26810 2.55292 2.74268 2.88376 3.20858 3.32006 3.56380 3.59384 3.78721 3.94346 4.03607 4.07431 4.14813 4.22748 4.25969 4.28272 4.42178 4.42811 4.51456 4.54705 4.62540 4.65380 4.68440 4.79233 4.81678 4.87114 4.89399 4.94434 5.09700 5.10822 5.21218 5.23276 5.33092 5.37936 5.41812 5.44910 5.53608 5.54819 5.64245 5.70017 5.76952 5.79841 6.00928 6.07508 6.42717 6.69472 7.17405 7.40207 7.90342 8.43467 9.23623 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.002224 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.012577 B =12588.798072 C =13065.940925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.044 4.044 3 Si 0.959 3.041 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.600 5.600 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.103 4.103 13 C 0.162 3.838 14 H 0.062 0.938 15 N -0.713 5.713 16 C 0.506 3.494 17 O -0.578 6.578 18 C -0.126 4.126 19 C 0.137 3.863 20 H 0.068 0.932 21 O -0.371 6.371 22 C 0.081 3.919 23 C -0.144 4.144 24 C -0.101 4.101 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.098 4.098 28 C -0.141 4.141 29 C -0.114 4.114 30 C 0.173 3.827 31 H 0.247 0.753 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.412 0.588 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.142 0.858 47 H 0.079 0.921 48 H 0.018 0.982 49 H 0.060 0.940 50 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.540 -18.380 -1.235 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.240 4.240 3 Si 0.788 3.212 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.389 4.389 8 H 0.082 0.918 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.174 4.174 12 C -0.141 4.141 13 C 0.058 3.942 14 H 0.080 0.920 15 N -0.364 5.364 16 C 0.294 3.706 17 O -0.457 6.457 18 C -0.165 4.165 19 C 0.079 3.921 20 H 0.086 0.914 21 O -0.290 6.290 22 C 0.004 3.996 23 C -0.144 4.144 24 C -0.119 4.119 25 C -0.133 4.133 26 C -0.136 4.136 27 C -0.116 4.116 28 C -0.141 4.141 29 C -0.154 4.154 30 C 0.049 3.951 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.248 0.752 39 H 0.153 0.847 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.172 0.828 46 H 0.160 0.840 47 H 0.098 0.902 48 H 0.036 0.964 49 H 0.078 0.922 50 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -18.966 -18.341 -0.524 26.389 hybrid contribution 0.362 1.371 -0.049 1.419 sum -18.604 -16.970 -0.573 25.188 Atomic orbital electron populations 1.70114 1.05937 1.25196 1.55003 1.25531 0.96046 1.00659 1.01715 0.85414 0.78010 0.80428 0.77325 1.21280 1.22133 1.20457 1.19395 0.93680 0.86492 1.39325 0.91836 1.44314 1.33774 1.01605 1.52551 1.20563 0.96503 0.86898 0.94090 1.22723 0.94964 1.00071 0.99595 1.21534 0.96035 1.01303 0.95207 1.20035 0.82905 0.93659 0.97650 0.91960 1.46101 1.18494 1.55905 1.15942 1.21110 0.88660 0.77434 0.83397 1.90710 1.66452 1.60182 1.28375 1.21841 0.93460 1.02149 0.99066 1.20968 0.85880 0.88271 0.96999 0.91391 1.89207 1.33794 1.26915 1.79131 1.21929 0.85430 0.95005 0.97186 1.21241 0.96660 0.96044 1.00499 1.20719 0.90794 1.00525 0.99839 1.21554 0.98611 0.95930 0.97212 1.21530 0.98141 0.94828 0.99067 1.20718 0.90981 1.01057 0.98841 1.20981 0.95421 0.96152 1.01562 1.21078 0.97090 0.96328 1.00891 1.19919 0.86302 0.98551 0.90313 0.94360 0.94873 0.95142 0.92910 0.90688 0.90493 0.93174 0.75186 0.84659 0.86298 0.87174 0.90428 0.83747 0.82754 0.82841 0.84002 0.90244 0.96367 0.92212 0.97776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.67 9.43 21.65 0.20 -51.46 16 2 C -0.04 -2.40 4.91 84.86 0.42 -1.98 16 3 Si 0.96 44.91 29.60 68.60 2.03 46.94 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.26 -14.21 9.63 84.03 0.81 -13.41 16 8 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 9 N -0.60 -30.58 2.60 -707.85 -1.84 -32.43 16 10 C 0.15 6.36 5.17 87.60 0.45 6.82 16 11 C -0.13 -4.81 6.41 31.87 0.20 -4.60 16 12 C -0.10 -3.67 5.30 30.30 0.16 -3.51 16 13 C 0.16 6.17 2.17 43.91 0.10 6.27 16 14 H 0.06 2.67 5.84 -2.39 -0.01 2.66 16 15 N -0.71 -21.49 5.01 -447.71 -2.24 -23.74 16 16 C 0.51 16.19 7.59 87.66 0.67 16.85 16 17 O -0.58 -24.44 15.26 7.15 0.11 -24.33 16 18 C -0.13 -2.75 5.36 29.85 0.16 -2.59 16 19 C 0.14 3.44 2.84 29.97 0.09 3.53 16 20 H 0.07 1.98 7.95 -2.39 -0.02 1.96 16 21 O -0.37 -10.81 10.82 -138.79 -1.50 -12.31 16 22 C 0.08 1.69 7.63 71.36 0.54 2.23 16 23 C -0.14 -2.73 6.33 -19.69 -0.12 -2.85 16 24 C -0.10 -1.39 10.04 22.22 0.22 -1.17 16 25 C -0.12 -1.27 10.05 22.29 0.22 -1.05 16 26 C -0.12 -1.36 10.05 22.29 0.22 -1.13 16 27 C -0.10 -1.47 9.79 22.20 0.22 -1.25 16 28 C -0.14 -2.80 5.73 -19.71 -0.11 -2.92 16 29 C -0.11 -5.22 4.73 28.36 0.13 -5.08 16 30 C 0.17 8.85 5.24 83.58 0.44 9.29 16 31 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 32 H 0.03 1.41 7.99 -2.39 -0.02 1.39 16 33 H 0.03 1.29 6.90 -2.39 -0.02 1.28 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.08 2.18 7.81 -2.38 -0.02 2.16 16 37 H 0.05 2.13 6.83 -2.39 -0.02 2.11 16 38 H 0.41 9.28 8.45 -92.71 -0.78 8.50 16 39 H 0.14 2.09 7.88 -2.39 -0.02 2.07 16 40 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 45 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 46 H 0.14 1.57 7.90 -2.91 -0.02 1.55 16 47 H 0.08 4.02 5.29 -2.39 -0.01 4.01 16 48 H 0.02 0.83 7.90 -2.39 -0.02 0.81 16 49 H 0.06 3.39 6.05 -2.39 -0.01 3.38 16 50 H 0.00 0.21 8.13 -2.39 -0.02 0.19 16 Total: -1.00 -72.37 388.99 1.74 -70.63 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.17 Total: 23.25 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.82 Total: 3.45 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -3.88 Total: -107.63 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.39 Total: -36.64 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.37 1.74 -70.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052904801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.686 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds