Wall clock time and date at job start Wed Apr 1 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47298 * 299.99911 * 3 2 1 6 6 H 1.48496 * 109.47173 * 59.99892 * 3 2 1 7 7 C 1.38809 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99501 * 196.91954 * 7 2 1 9 9 N 1.36929 * 120.00523 * 16.91976 * 7 2 1 10 10 C 1.47172 * 121.22215 * 26.08897 * 9 7 2 11 11 C 1.53232 * 108.70333 * 129.08187 * 10 9 7 12 12 O 1.43076 * 109.44534 * 51.58317 * 11 10 9 13 13 C 1.42702 * 113.86721 * 298.35502 * 12 11 10 14 14 H 1.09002 * 108.38387 * 304.72396 * 13 12 11 15 15 C 1.52507 * 110.62007 * 185.35756 * 13 12 11 16 16 C 1.52723 * 109.86192 * 298.58026 * 15 13 12 17 17 N 1.46983 * 108.67767 * 305.69500 * 16 15 13 18 18 C 1.34776 * 120.71992 * 234.52407 * 17 16 15 19 19 O 1.21277 * 120.00003 * 179.44616 * 18 17 16 20 20 C 1.50703 * 119.99993 * 359.71604 * 18 17 16 21 21 C 1.52998 * 109.47212 * 180.02562 * 20 18 17 22 22 C 1.50694 * 109.47387 * 180.02562 * 21 20 18 23 23 C 1.38241 * 120.00263 * 269.72560 * 22 21 20 24 24 C 1.38231 * 120.00262 * 179.74183 * 23 22 21 25 25 C 1.38242 * 119.99754 * 0.55148 * 24 23 22 26 26 C 1.38233 * 119.99716 * 359.69926 * 25 24 23 27 27 C 1.38224 * 120.00350 * 0.02691 * 26 25 24 28 28 C 1.46793 * 118.55966 * 54.24692 * 17 16 15 29 29 C 1.47595 * 121.22807 * 206.10846 * 9 7 2 30 30 H 1.09002 * 111.16457 * 352.77837 * 29 9 7 31 31 H 0.97005 * 119.99857 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.59950 * 9.31723 * 10 9 7 33 33 H 1.09005 * 109.60124 * 248.84760 * 10 9 7 34 34 H 1.09001 * 109.47354 * 291.59241 * 11 10 9 35 35 H 1.08992 * 109.47875 * 171.57902 * 11 10 9 36 36 H 1.09003 * 109.41963 * 58.79979 * 15 13 12 37 37 H 1.08999 * 109.41884 * 178.67079 * 15 13 12 38 38 H 1.09002 * 109.55884 * 185.91620 * 16 15 13 39 39 H 1.08994 * 109.49133 * 65.43829 * 16 15 13 40 40 H 1.09007 * 109.46994 * 300.00501 * 20 18 17 41 41 H 1.08996 * 109.47108 * 59.99954 * 20 18 17 42 42 H 1.09003 * 109.46569 * 299.99973 * 21 20 18 43 43 H 1.08995 * 109.47119 * 59.99628 * 21 20 18 44 44 H 1.08006 * 119.99493 * 359.97438 * 23 22 21 45 45 H 1.07998 * 120.00270 * 180.27466 * 24 23 22 46 46 H 1.07995 * 119.99736 * 179.72848 * 25 24 23 47 47 H 1.08003 * 119.99854 * 180.02562 * 26 25 24 48 48 H 1.08007 * 119.99907 * 179.97438 * 27 26 25 49 49 H 1.08994 * 109.51999 * 65.87006 * 28 17 16 50 50 H 1.09004 * 109.51731 * 186.06250 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2223 0.2728 9 7 1.3700 -2.3625 -0.3440 10 6 0.1952 -2.3514 -1.2303 11 6 0.4203 -3.3648 -2.3574 12 8 0.7878 -4.6283 -1.7955 13 6 2.0031 -4.5963 -1.0483 14 1 2.7905 -4.1997 -1.6893 15 6 2.3928 -5.9998 -0.5964 16 6 1.3079 -6.5720 0.3135 17 7 1.0700 -5.6272 1.4140 18 6 1.1519 -6.0304 2.6974 19 8 0.9630 -5.2375 3.5954 20 6 1.4843 -7.4653 3.0167 21 6 1.5137 -7.6565 4.5344 22 6 1.8467 -9.0910 4.8537 23 6 0.8336 -10.0211 4.9939 24 6 1.1393 -11.3381 5.2815 25 6 2.4576 -11.7229 5.4402 26 6 3.4703 -10.7918 5.3050 27 6 3.1649 -9.4760 5.0118 28 6 0.7473 -4.2335 1.0851 29 6 1.8325 -3.6704 0.1600 30 1 2.7754 -3.5736 0.6984 31 1 -0.4850 0.8401 -0.0004 32 1 0.0665 -1.3555 -1.6544 33 1 -0.6937 -2.6272 -0.6628 34 1 1.2186 -3.0113 -3.0099 35 1 -0.4977 -3.4768 -2.9342 36 1 2.5111 -6.6418 -1.4693 37 1 3.3342 -5.9558 -0.0488 38 1 1.6377 -7.5293 0.7172 39 1 0.3894 -6.7086 -0.2572 40 1 0.7272 -8.1188 2.5830 41 1 2.4603 -7.7135 2.5998 42 1 2.2706 -7.0029 4.9682 43 1 0.5375 -7.4083 4.9508 44 1 -0.1966 -9.7194 4.8751 45 1 0.3480 -12.0656 5.3867 46 1 2.6961 -12.7510 5.6692 47 1 4.5003 -11.0925 5.4285 48 1 3.9562 -8.7485 4.9067 49 1 -0.2182 -4.1924 0.5810 50 1 0.7068 -3.6432 2.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074390648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:13 Heat of formation + Delta-G solvation = -30.675434 kcal Electronic energy + Delta-G solvation = -30652.543439 eV Core-core repulsion = 26645.103862 eV Total energy + Delta-G solvation = -4007.439577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.21198 -39.45249 -38.52975 -35.76964 -34.67163 -34.11849 -31.81530 -31.52031 -31.09531 -30.10041 -29.27438 -27.43096 -25.48462 -24.18402 -23.61997 -22.77330 -22.69715 -21.49216 -21.07544 -19.26745 -18.22820 -17.32022 -16.93668 -16.59220 -15.90342 -15.59191 -15.43839 -15.22001 -15.18646 -15.03497 -14.46247 -14.37228 -13.85988 -13.73178 -13.60867 -13.23232 -13.18148 -13.06463 -12.85725 -12.60167 -12.36093 -12.22582 -12.02401 -11.87832 -11.43646 -11.36082 -11.15374 -11.07901 -10.96151 -10.93376 -10.77906 -10.60216 -10.24075 -10.18387 -10.00592 -9.64213 -9.48024 -9.13523 -9.01249 -8.87268 -8.60437 -8.22041 -6.77369 -5.87242 -3.30843 1.13754 1.18793 2.91630 3.27563 3.33830 3.41384 3.43423 3.59839 4.30342 4.40296 4.48991 4.64893 4.77540 4.86312 4.92086 4.96212 5.03309 5.09817 5.16330 5.28643 5.31333 5.34100 5.34697 5.43017 5.49745 5.64077 5.70371 5.77370 5.78891 5.79606 5.90149 6.01082 6.04269 6.07836 6.09885 6.15097 6.25878 6.29715 6.29997 6.34415 6.42400 6.47652 6.68708 6.75667 6.80161 6.96703 7.07564 7.46882 7.70154 7.78227 7.87344 8.28817 8.50005 9.07580 9.69254 10.26524 11.20380 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.002442 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.019243 B =11464.866994 C =12229.937879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.584 5.584 10 C 0.138 3.862 11 C 0.040 3.960 12 O -0.388 6.388 13 C 0.081 3.919 14 H 0.051 0.949 15 C -0.123 4.123 16 C 0.112 3.888 17 N -0.607 5.607 18 C 0.508 3.492 19 O -0.544 6.544 20 C -0.131 4.131 21 C -0.067 4.067 22 C -0.078 4.078 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.117 4.117 28 C 0.105 3.895 29 C 0.135 3.865 30 H 0.073 0.927 31 H 0.255 0.745 32 H 0.096 0.904 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.067 0.933 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -22.033 3.321 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.307 5.307 10 C 0.012 3.988 11 C -0.038 4.038 12 O -0.307 6.307 13 C 0.021 3.979 14 H 0.069 0.931 15 C -0.162 4.162 16 C -0.011 4.011 17 N -0.340 5.340 18 C 0.296 3.704 19 O -0.422 6.422 20 C -0.171 4.171 21 C -0.105 4.105 22 C -0.078 4.078 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.135 4.135 28 C -0.018 4.018 29 C 0.027 3.973 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.085 0.915 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.518 -21.563 3.767 22.171 hybrid contribution 0.473 1.118 -0.091 1.217 sum 3.991 -20.445 3.676 21.153 Atomic orbital electron populations 1.70035 1.05252 1.25650 1.53443 1.25060 0.95358 0.98515 1.00529 0.86173 0.79324 0.83648 0.77329 1.20213 1.21482 1.21587 1.19210 0.92608 0.84192 1.42323 0.91296 1.44300 1.33605 1.00665 1.52088 1.21473 0.88995 0.98634 0.89693 1.23328 0.98860 0.84913 0.96727 1.87713 1.41471 1.31980 1.69565 1.22236 0.87147 0.94652 0.93874 0.93076 1.21726 0.98639 0.96298 0.99526 1.21556 0.99434 0.91730 0.88364 1.48318 1.69067 1.11573 1.05085 1.20597 0.77215 0.90178 0.82443 1.90705 1.50410 1.55542 1.45504 1.21656 1.03695 0.94421 0.97367 1.20366 1.03973 0.91646 0.94506 1.19989 0.93341 0.95769 0.98666 1.21118 0.99167 0.93087 1.00123 1.21149 0.96538 0.96107 0.99954 1.21136 0.93073 0.99448 1.00982 1.21148 0.99227 0.93420 0.99940 1.21119 0.96058 0.96248 1.00044 1.22313 0.99701 0.79139 1.00692 1.21571 0.96577 0.87063 0.92135 0.90834 0.93488 0.88590 0.95335 0.94108 0.90131 0.90394 0.90516 0.90328 0.90676 0.89093 0.89014 0.90069 0.90124 0.86003 0.86204 0.86344 0.86191 0.85967 0.91462 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 11.14 55.49 0.62 -25.01 16 2 C 0.00 0.12 4.96 -17.43 -0.09 0.04 16 3 Si 0.91 21.51 29.59 -169.99 -5.03 16.48 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.25 -6.84 9.71 -15.06 -0.15 -6.99 16 8 H 0.07 1.84 7.89 -52.48 -0.41 1.43 16 9 N -0.58 -14.24 2.71 -163.87 -0.44 -14.68 16 10 C 0.14 3.19 4.93 -3.56 -0.02 3.17 16 11 C 0.04 0.75 6.97 37.28 0.26 1.01 16 12 O -0.39 -7.09 9.59 -35.23 -0.34 -7.43 16 13 C 0.08 1.39 2.73 -26.89 -0.07 1.32 16 14 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 15 C -0.12 -1.59 5.80 -27.13 -0.16 -1.75 16 16 C 0.11 1.41 6.15 -3.92 -0.02 1.38 16 17 N -0.61 -9.80 2.97 -173.04 -0.51 -10.32 16 18 C 0.51 8.12 7.70 -10.98 -0.08 8.04 16 19 O -0.54 -11.05 15.40 5.56 0.09 -10.96 16 20 C -0.13 -1.45 4.03 -27.88 -0.11 -1.56 16 21 C -0.07 -0.75 4.63 -27.89 -0.13 -0.88 16 22 C -0.08 -0.77 5.13 -104.62 -0.54 -1.30 16 23 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.12 -0.99 10.05 -39.59 -0.40 -1.38 16 27 C -0.12 -1.08 9.70 -39.59 -0.38 -1.46 16 28 C 0.11 2.14 5.63 -3.72 -0.02 2.12 16 29 C 0.14 2.79 3.00 -67.08 -0.20 2.59 16 30 H 0.07 1.56 8.03 -51.93 -0.42 1.15 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.10 2.46 6.12 -51.93 -0.32 2.14 16 33 H 0.03 0.71 7.17 -51.93 -0.37 0.33 16 34 H 0.04 0.77 8.13 -51.93 -0.42 0.34 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.73 5.95 -51.93 -0.31 0.42 16 39 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 40 H 0.09 0.86 7.94 -51.92 -0.41 0.45 16 41 H 0.09 0.86 7.70 -51.93 -0.40 0.46 16 42 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 43 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 48 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 49 H 0.07 1.47 6.56 -51.93 -0.34 1.13 16 50 H 0.09 2.12 7.00 -51.93 -0.36 1.75 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -31.65 391.29 -10.97 -42.62 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.95 Total: 3.34 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.29 Total: 0.07 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.34 Total: -50.01 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.25 Total: -18.39 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.65 -10.97 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074390648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.947 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds