Wall clock time and date at job start Wed Apr 1 2020 03:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47298 * 299.99911 * 3 2 1 6 6 H 1.48496 * 109.47173 * 59.99892 * 3 2 1 7 7 C 1.38809 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99501 * 196.91954 * 7 2 1 9 9 N 1.36929 * 120.00523 * 16.91976 * 7 2 1 10 10 C 1.47172 * 121.22215 * 26.08897 * 9 7 2 11 11 C 1.53232 * 108.70333 * 129.08187 * 10 9 7 12 12 O 1.43076 * 109.44534 * 51.58317 * 11 10 9 13 13 C 1.42702 * 113.86721 * 298.35502 * 12 11 10 14 14 H 1.09002 * 108.38387 * 304.72396 * 13 12 11 15 15 C 1.52507 * 110.62007 * 185.35756 * 13 12 11 16 16 C 1.52723 * 109.86192 * 298.58026 * 15 13 12 17 17 N 1.46983 * 108.67767 * 305.69500 * 16 15 13 18 18 C 1.34776 * 120.71992 * 234.52407 * 17 16 15 19 19 O 1.21277 * 120.00003 * 179.44616 * 18 17 16 20 20 C 1.50703 * 119.99993 * 359.71604 * 18 17 16 21 21 C 1.52998 * 109.47212 * 180.02562 * 20 18 17 22 22 C 1.50694 * 109.47387 * 180.02562 * 21 20 18 23 23 C 1.38241 * 120.00263 * 269.72560 * 22 21 20 24 24 C 1.38231 * 120.00262 * 179.74183 * 23 22 21 25 25 C 1.38242 * 119.99754 * 0.55148 * 24 23 22 26 26 C 1.38233 * 119.99716 * 359.69926 * 25 24 23 27 27 C 1.38224 * 120.00350 * 0.02691 * 26 25 24 28 28 C 1.46793 * 118.55966 * 54.24692 * 17 16 15 29 29 C 1.47595 * 121.22807 * 206.10846 * 9 7 2 30 30 H 1.09002 * 111.16457 * 352.77837 * 29 9 7 31 31 H 0.97005 * 119.99857 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.59950 * 9.31723 * 10 9 7 33 33 H 1.09005 * 109.60124 * 248.84760 * 10 9 7 34 34 H 1.09001 * 109.47354 * 291.59241 * 11 10 9 35 35 H 1.08992 * 109.47875 * 171.57902 * 11 10 9 36 36 H 1.09003 * 109.41963 * 58.79979 * 15 13 12 37 37 H 1.08999 * 109.41884 * 178.67079 * 15 13 12 38 38 H 1.09002 * 109.55884 * 185.91620 * 16 15 13 39 39 H 1.08994 * 109.49133 * 65.43829 * 16 15 13 40 40 H 1.09007 * 109.46994 * 300.00501 * 20 18 17 41 41 H 1.08996 * 109.47108 * 59.99954 * 20 18 17 42 42 H 1.09003 * 109.46569 * 299.99973 * 21 20 18 43 43 H 1.08995 * 109.47119 * 59.99628 * 21 20 18 44 44 H 1.08006 * 119.99493 * 359.97438 * 23 22 21 45 45 H 1.07998 * 120.00270 * 180.27466 * 24 23 22 46 46 H 1.07995 * 119.99736 * 179.72848 * 25 24 23 47 47 H 1.08003 * 119.99854 * 180.02562 * 26 25 24 48 48 H 1.08007 * 119.99907 * 179.97438 * 27 26 25 49 49 H 1.08994 * 109.51999 * 65.87006 * 28 17 16 50 50 H 1.09004 * 109.51731 * 186.06250 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2223 0.2728 9 7 1.3700 -2.3625 -0.3440 10 6 0.1952 -2.3514 -1.2303 11 6 0.4203 -3.3648 -2.3574 12 8 0.7878 -4.6283 -1.7955 13 6 2.0031 -4.5963 -1.0483 14 1 2.7905 -4.1997 -1.6893 15 6 2.3928 -5.9998 -0.5964 16 6 1.3079 -6.5720 0.3135 17 7 1.0700 -5.6272 1.4140 18 6 1.1519 -6.0304 2.6974 19 8 0.9630 -5.2375 3.5954 20 6 1.4843 -7.4653 3.0167 21 6 1.5137 -7.6565 4.5344 22 6 1.8467 -9.0910 4.8537 23 6 0.8336 -10.0211 4.9939 24 6 1.1393 -11.3381 5.2815 25 6 2.4576 -11.7229 5.4402 26 6 3.4703 -10.7918 5.3050 27 6 3.1649 -9.4760 5.0118 28 6 0.7473 -4.2335 1.0851 29 6 1.8325 -3.6704 0.1600 30 1 2.7754 -3.5736 0.6984 31 1 -0.4850 0.8401 -0.0004 32 1 0.0665 -1.3555 -1.6544 33 1 -0.6937 -2.6272 -0.6628 34 1 1.2186 -3.0113 -3.0099 35 1 -0.4977 -3.4768 -2.9342 36 1 2.5111 -6.6418 -1.4693 37 1 3.3342 -5.9558 -0.0488 38 1 1.6377 -7.5293 0.7172 39 1 0.3894 -6.7086 -0.2572 40 1 0.7272 -8.1188 2.5830 41 1 2.4603 -7.7135 2.5998 42 1 2.2706 -7.0029 4.9682 43 1 0.5375 -7.4083 4.9508 44 1 -0.1966 -9.7194 4.8751 45 1 0.3480 -12.0656 5.3867 46 1 2.6961 -12.7510 5.6692 47 1 4.5003 -11.0925 5.4285 48 1 3.9562 -8.7485 4.9067 49 1 -0.2182 -4.1924 0.5810 50 1 0.7068 -3.6432 2.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074390648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:11 Heat of formation + Delta-G solvation = -48.714451 kcal Electronic energy + Delta-G solvation = -30653.325669 eV Core-core repulsion = 26645.103862 eV Total energy + Delta-G solvation = -4008.221808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.56468 -40.34849 -39.79196 -37.16930 -36.46258 -35.01213 -33.51097 -33.06104 -31.70420 -31.35754 -30.46432 -29.18594 -26.72758 -25.65613 -25.05161 -24.23336 -23.38812 -22.91537 -21.87932 -20.72446 -19.60874 -18.91566 -18.33186 -17.40044 -17.15860 -17.02640 -16.88925 -16.79772 -16.20878 -16.15521 -15.85246 -15.58051 -15.44476 -14.93295 -14.81404 -14.42794 -14.27685 -14.10725 -14.04484 -13.81920 -13.67032 -13.48297 -13.38737 -13.09090 -12.91203 -12.77188 -12.57621 -12.42725 -12.25305 -12.17503 -12.07398 -11.86571 -11.83830 -11.69338 -11.67745 -11.21771 -10.83104 -10.76449 -10.52493 -9.75689 -9.68150 -9.55599 -8.72982 -7.94856 -5.41936 0.48928 0.56636 1.41565 1.43434 1.54025 1.65047 2.01089 2.44758 2.88970 2.94209 3.19688 3.43369 3.50334 3.84978 3.95386 3.98849 4.04995 4.11900 4.18384 4.21166 4.25847 4.27858 4.30869 4.37967 4.44684 4.51880 4.54754 4.62946 4.67243 4.68343 4.73277 4.82656 4.86662 4.91596 4.97403 4.99553 5.05909 5.10708 5.23204 5.25123 5.25703 5.30524 5.48162 5.56224 5.58774 5.64691 5.69641 5.79443 6.18866 6.24349 6.34671 6.51509 7.02107 7.21290 7.69288 8.23479 9.10231 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017807 B = 0.002442 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.019243 B =11464.866994 C =12229.937879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.048 4.048 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.295 1.295 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.603 5.603 10 C 0.145 3.855 11 C 0.053 3.947 12 O -0.382 6.382 13 C 0.084 3.916 14 H 0.049 0.951 15 C -0.116 4.116 16 C 0.109 3.891 17 N -0.607 5.607 18 C 0.502 3.498 19 O -0.598 6.598 20 C -0.116 4.116 21 C -0.061 4.061 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.125 4.125 27 C -0.127 4.127 28 C 0.124 3.876 29 C 0.132 3.868 30 H 0.062 0.938 31 H 0.252 0.748 32 H 0.067 0.933 33 H 0.000 1.000 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.127 0.873 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.128 0.872 49 H 0.047 0.953 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 -25.778 2.257 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.222 1.222 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.326 5.326 10 C 0.019 3.981 11 C -0.025 4.025 12 O -0.301 6.301 13 C 0.025 3.975 14 H 0.067 0.933 15 C -0.154 4.154 16 C -0.012 4.012 17 N -0.339 5.339 18 C 0.292 3.708 19 O -0.479 6.479 20 C -0.155 4.155 21 C -0.099 4.099 22 C -0.089 4.089 23 C -0.146 4.146 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.142 4.142 27 C -0.145 4.145 28 C -0.001 4.001 29 C 0.024 3.976 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.018 0.982 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.145 0.855 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.146 0.854 49 H 0.065 0.935 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.236 -25.372 2.676 26.045 hybrid contribution -0.057 2.223 0.333 2.249 sum 5.178 -23.149 3.010 23.911 Atomic orbital electron populations 1.70189 1.06624 1.26001 1.54954 1.25815 0.96119 1.01556 1.00880 0.85174 0.78583 0.79610 0.76869 1.19083 1.21047 1.22227 1.19490 0.92760 0.85577 1.41614 0.91581 1.44536 1.33677 1.01466 1.52920 1.21303 0.87782 0.98525 0.90466 1.23150 1.00440 0.83996 0.94932 1.87731 1.42008 1.31038 1.69369 1.22299 0.86657 0.96816 0.91735 0.93287 1.21788 0.99115 0.93496 1.01048 1.21897 0.99628 0.92469 0.87251 1.48373 1.68779 1.10190 1.06592 1.21590 0.75747 0.91927 0.81508 1.90686 1.52632 1.57507 1.47080 1.21667 1.05845 0.90462 0.97547 1.20233 1.02559 0.92586 0.94554 1.19859 0.94030 0.94787 1.00179 1.21271 0.99328 0.93583 1.00418 1.21426 0.97432 0.96044 0.99364 1.21478 0.92864 1.00551 0.99989 1.21428 1.00452 0.93024 0.99344 1.21272 0.95900 0.97041 1.00312 1.21686 0.98749 0.81720 0.97976 1.21725 0.95625 0.86377 0.93855 0.91987 0.93912 0.91474 0.98203 0.93530 0.87378 0.86867 0.88971 0.85684 0.90688 0.86444 0.86131 0.91702 0.91779 0.85533 0.84340 0.84167 0.84306 0.85442 0.93509 0.94228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 11.14 21.65 0.24 -55.48 16 2 C -0.05 -2.71 4.96 84.86 0.42 -2.29 16 3 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.26 -14.80 9.71 84.03 0.82 -13.98 16 8 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 9 N -0.60 -30.59 2.71 -672.36 -1.82 -32.42 16 10 C 0.14 6.99 4.93 86.33 0.43 7.41 16 11 C 0.05 1.95 6.97 72.06 0.50 2.46 16 12 O -0.38 -13.29 9.59 -148.98 -1.43 -14.71 16 13 C 0.08 2.77 2.73 30.49 0.08 2.86 16 14 H 0.05 1.66 8.11 -2.39 -0.02 1.64 16 15 C -0.12 -2.53 5.80 30.34 0.18 -2.35 16 16 C 0.11 2.33 6.15 86.20 0.53 2.86 16 17 N -0.61 -19.23 2.97 -819.77 -2.43 -21.66 16 18 C 0.50 15.96 7.70 87.66 0.67 16.63 16 19 O -0.60 -25.58 15.40 -3.02 -0.05 -25.62 16 20 C -0.12 -2.28 4.03 29.85 0.12 -2.16 16 21 C -0.06 -1.33 4.63 29.85 0.14 -1.19 16 22 C -0.09 -1.61 5.13 -19.87 -0.10 -1.71 16 23 C -0.13 -2.11 9.70 22.27 0.22 -1.89 16 24 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 25 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 26 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 27 C -0.13 -2.08 9.70 22.27 0.22 -1.87 16 28 C 0.12 5.31 5.63 86.43 0.49 5.79 16 29 C 0.13 5.57 3.00 44.95 0.13 5.71 16 30 H 0.06 2.72 8.03 -2.39 -0.02 2.70 16 31 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 32 H 0.07 3.61 6.12 -2.39 -0.01 3.60 16 33 H 0.00 -0.01 7.17 -2.38 -0.02 -0.02 16 34 H 0.05 1.69 8.13 -2.39 -0.02 1.68 16 35 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.13 1.60 5.95 -2.39 -0.01 1.58 16 39 H 0.07 1.68 7.94 -2.39 -0.02 1.66 16 40 H 0.12 1.77 7.94 -2.38 -0.02 1.75 16 41 H 0.12 1.75 7.70 -2.39 -0.02 1.73 16 42 H 0.06 1.59 8.04 -2.39 -0.02 1.57 16 43 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 44 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 46 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 47 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 48 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 49 H 0.05 2.16 6.56 -2.39 -0.02 2.15 16 50 H 0.04 2.05 7.00 -2.39 -0.02 2.03 16 Total: -1.00 -75.02 391.29 2.97 -72.05 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.92 Total: 18.44 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.51 Total: 11.84 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.02 Total: -109.56 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.48 Total: -40.34 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.02 2.97 -72.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074390648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.340 kcal (2) G-P(sol) polarization free energy of solvation -75.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds