Wall clock time and date at job start Wed Apr 1 2020 03:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46881 * 239.99892 * 3 2 1 5 5 H 1.48504 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47108 * 120.00115 * 3 2 1 7 7 C 1.38813 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99962 * 194.43742 * 7 2 1 9 9 N 1.36932 * 120.00048 * 14.44246 * 7 2 1 10 10 C 1.47353 * 121.30453 * 26.95188 * 9 7 2 11 11 C 1.53191 * 108.80138 * 129.74694 * 10 9 7 12 12 O 1.43154 * 109.74088 * 51.20989 * 11 10 9 13 13 C 1.42600 * 113.62171 * 298.30614 * 12 11 10 14 14 H 1.09003 * 109.34026 * 304.43168 * 13 12 11 15 15 C 1.52782 * 111.11640 * 183.64288 * 13 12 11 16 16 C 1.53375 * 108.81592 * 177.45104 * 15 13 12 17 17 N 1.46837 * 109.23957 * 53.84414 * 16 15 13 18 18 C 1.34779 * 120.41103 * 127.74541 * 17 16 15 19 19 O 1.21281 * 119.99812 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.99565 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.46626 * 180.02562 * 20 18 17 22 22 C 1.50706 * 109.47041 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99655 * 89.99977 * 22 21 20 24 24 C 1.38241 * 119.99576 * 179.97438 * 23 22 21 25 25 C 1.38229 * 120.00069 * 0.08891 * 24 23 22 26 26 C 1.38234 * 120.00103 * 359.84329 * 25 24 23 27 27 C 1.38230 * 119.99903 * 269.97994 * 22 21 20 28 28 C 1.47133 * 119.18039 * 308.01460 * 17 16 15 29 29 C 1.46880 * 121.30201 * 206.93876 * 9 7 2 30 30 H 1.08991 * 109.66272 * 112.36325 * 29 9 7 31 31 H 0.97006 * 120.00092 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58130 * 9.95306 * 10 9 7 33 33 H 1.09001 * 109.57970 * 249.54492 * 10 9 7 34 34 H 1.08998 * 109.43159 * 291.11952 * 11 10 9 35 35 H 1.09008 * 109.37957 * 171.25543 * 11 10 9 36 36 H 1.09002 * 109.58082 * 57.65811 * 15 13 12 37 37 H 1.08995 * 109.57997 * 297.25396 * 15 13 12 38 38 H 1.09000 * 109.50787 * 293.91046 * 16 15 13 39 39 H 1.08993 * 109.50700 * 173.76832 * 16 15 13 40 40 H 1.08991 * 109.47536 * 60.00165 * 20 18 17 41 41 H 1.09001 * 109.47166 * 299.99301 * 20 18 17 42 42 H 1.09002 * 109.47137 * 60.00313 * 21 20 18 43 43 H 1.08996 * 109.47497 * 299.99826 * 21 20 18 44 44 H 1.07990 * 120.00271 * 359.70153 * 23 22 21 45 45 H 1.07995 * 119.99900 * 179.97438 * 24 23 22 46 46 H 1.08003 * 119.99970 * 179.97438 * 25 24 23 47 47 H 1.08009 * 120.00184 * 180.11306 * 26 25 24 48 48 H 1.07998 * 120.00351 * 359.97187 * 27 22 21 49 49 H 1.09004 * 109.72599 * 172.62315 * 28 17 16 50 50 H 1.08995 * 109.72792 * 293.29433 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0647 -1.2168 0.2337 9 7 1.3580 -2.3694 -0.2947 10 6 0.1600 -2.3812 -1.1526 11 6 0.3456 -3.4389 -2.2452 12 8 0.7243 -4.6855 -1.6520 13 6 1.9632 -4.6304 -0.9480 14 1 2.7427 -4.2662 -1.6172 15 6 2.3557 -6.0077 -0.4159 16 6 3.7213 -5.9007 0.2740 17 7 3.6700 -4.8385 1.2865 18 6 4.0560 -5.0850 2.5541 19 8 4.0110 -4.2020 3.3842 20 6 4.5433 -6.4578 2.9398 21 6 4.9153 -6.4685 4.4239 22 6 5.4021 -7.8416 4.8098 23 6 6.7452 -8.1524 4.7084 24 6 7.1918 -9.4117 5.0630 25 6 6.2951 -10.3606 5.5171 26 6 4.9522 -10.0493 5.6198 27 6 4.5056 -8.7899 5.2655 28 6 3.1865 -3.5033 0.9015 29 6 1.8254 -3.6588 0.2312 30 1 1.0995 -4.0486 0.9447 31 1 -0.4850 0.8401 -0.0004 32 1 0.0296 -1.4011 -1.6114 33 1 -0.7165 -2.6256 -0.5526 34 1 1.1243 -3.1144 -2.9355 35 1 -0.5908 -3.5657 -2.7886 36 1 2.4189 -6.7145 -1.2433 37 1 1.6095 -6.3482 0.3019 38 1 4.4852 -5.6619 -0.4660 39 1 3.9621 -6.8494 0.7536 40 1 5.4192 -6.7133 2.3435 41 1 3.7545 -7.1878 2.7581 42 1 4.0390 -6.2133 5.0199 43 1 5.7039 -5.7386 4.6061 44 1 7.4449 -7.4130 4.3481 45 1 8.2411 -9.6548 4.9834 46 1 6.6440 -11.3446 5.7937 47 1 4.2518 -10.7902 5.9763 48 1 3.4564 -8.5468 5.3455 49 1 3.0887 -2.8775 1.7887 50 1 3.8870 -3.0455 0.2032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074390649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:17 Heat of formation + Delta-G solvation = -30.288219 kcal Electronic energy + Delta-G solvation = -30537.540243 eV Core-core repulsion = 26530.117457 eV Total energy + Delta-G solvation = -4007.422786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.26255 -39.45278 -38.54620 -36.10006 -34.74521 -34.15791 -31.88097 -31.39852 -31.11270 -30.22843 -29.49426 -27.14648 -25.62286 -24.19477 -23.92431 -22.79339 -22.03882 -21.48559 -20.92132 -19.70032 -18.73698 -17.38672 -16.84998 -16.69411 -15.95010 -15.73806 -15.37853 -15.18673 -15.15160 -15.03881 -14.60744 -14.02930 -13.97921 -13.73380 -13.62582 -13.23708 -13.19750 -13.07686 -12.90362 -12.82708 -12.57402 -12.35059 -11.98334 -11.84605 -11.46971 -11.36336 -11.19157 -10.99486 -10.98964 -10.94836 -10.84375 -10.60141 -10.26054 -10.24346 -9.98781 -9.64984 -9.57259 -9.15259 -8.99655 -8.90087 -8.54444 -8.35768 -6.74520 -5.84161 -3.29843 1.11723 1.16947 2.81407 3.14121 3.36653 3.41786 3.42765 3.56879 4.22651 4.41600 4.43525 4.62829 4.75405 4.82447 4.84306 4.92792 4.99270 5.02293 5.18378 5.27150 5.30581 5.31597 5.34771 5.39737 5.43326 5.56665 5.66521 5.70352 5.73948 5.76651 5.87509 5.90249 5.93525 6.05727 6.09368 6.13866 6.23910 6.24519 6.28128 6.32466 6.45179 6.45773 6.64624 6.70912 6.78259 6.86644 7.12990 7.50718 7.61449 7.70179 7.88300 8.31589 8.38403 9.09480 9.72649 10.30009 11.23803 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.002546 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.945646 B =10994.565903 C =12166.767103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.588 5.588 10 C 0.142 3.858 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.076 3.924 14 H 0.052 0.948 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.612 5.612 18 C 0.511 3.489 19 O -0.538 6.538 20 C -0.132 4.132 21 C -0.067 4.067 22 C -0.078 4.078 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.116 4.116 28 C 0.123 3.877 29 C 0.137 3.863 30 H 0.036 0.964 31 H 0.256 0.744 32 H 0.097 0.903 33 H 0.027 0.973 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.102 0.898 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.668 -20.001 3.782 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.387 4.387 8 H 0.089 0.911 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.039 4.039 12 O -0.309 6.309 13 C 0.017 3.983 14 H 0.070 0.930 15 C -0.163 4.163 16 C -0.012 4.012 17 N -0.346 5.346 18 C 0.299 3.701 19 O -0.415 6.415 20 C -0.172 4.172 21 C -0.105 4.105 22 C -0.078 4.078 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.134 4.134 28 C 0.002 3.998 29 C 0.029 3.971 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.120 0.880 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.420 -19.496 4.223 22.506 hybrid contribution 0.381 1.062 -0.138 1.137 sum 10.802 -18.434 4.085 21.753 Atomic orbital electron populations 1.69994 1.05274 1.25780 1.53623 1.25070 0.95363 0.98440 1.00427 0.86332 0.78906 0.83115 0.78239 1.20955 1.21530 1.20647 1.19102 0.91992 0.83938 1.43670 0.91064 1.44032 1.31593 1.01004 1.54635 1.21466 0.88576 0.97967 0.90359 1.23343 0.98796 0.85345 0.96397 1.87739 1.39069 1.33238 1.70815 1.22421 0.86657 0.94913 0.94351 0.93016 1.21848 0.96699 0.97201 1.00578 1.21704 0.97320 0.90920 0.91244 1.48303 1.64460 1.12690 1.09156 1.20610 0.77556 0.90271 0.81669 1.90720 1.54360 1.47202 1.49220 1.21669 1.02741 0.95241 0.97560 1.20372 1.02758 0.92798 0.94588 1.19974 0.93572 0.95856 0.98424 1.21109 0.95280 0.96855 1.00259 1.21147 0.99586 0.93653 0.99384 1.21140 0.93610 0.99381 1.00467 1.21160 0.95839 0.96705 1.00002 1.21130 0.99670 0.93310 0.99327 1.21652 0.94887 0.81900 1.01401 1.21208 0.94100 0.88654 0.93146 0.94659 0.93420 0.88452 0.95455 0.94128 0.90078 0.90256 0.90846 0.91197 0.89507 0.88957 0.88842 0.90011 0.90067 0.86008 0.86202 0.86328 0.86159 0.85932 0.88009 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 11.06 55.49 0.61 -25.31 16 2 C 0.01 0.17 5.01 -17.43 -0.09 0.08 16 3 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.26 -6.90 8.89 -15.06 -0.13 -7.04 16 8 H 0.07 1.86 6.26 -52.48 -0.33 1.53 16 9 N -0.59 -14.61 3.04 -164.62 -0.50 -15.11 16 10 C 0.14 3.39 5.42 -3.48 -0.02 3.37 16 11 C 0.04 0.76 6.95 37.26 0.26 1.02 16 12 O -0.39 -7.62 10.49 -35.23 -0.37 -7.99 16 13 C 0.08 1.37 2.48 -26.63 -0.07 1.30 16 14 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 15 C -0.12 -1.66 5.82 -26.65 -0.16 -1.82 16 16 C 0.11 1.28 6.32 -3.66 -0.02 1.25 16 17 N -0.61 -9.38 2.99 -172.97 -0.52 -9.89 16 18 C 0.51 7.81 7.69 -10.99 -0.08 7.73 16 19 O -0.54 -10.54 15.38 5.56 0.09 -10.46 16 20 C -0.13 -1.38 4.02 -27.88 -0.11 -1.49 16 21 C -0.07 -0.72 4.63 -27.88 -0.13 -0.85 16 22 C -0.08 -0.75 5.13 -104.62 -0.54 -1.29 16 23 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 25 C -0.13 -1.00 10.05 -39.59 -0.40 -1.39 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.12 -1.06 9.70 -39.58 -0.38 -1.44 16 28 C 0.12 2.40 4.47 -3.94 -0.02 2.38 16 29 C 0.14 2.90 3.01 -67.76 -0.20 2.69 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.10 2.53 6.15 -51.93 -0.32 2.21 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.73 5.90 -51.93 -0.31 0.42 16 40 H 0.09 0.79 7.95 -51.93 -0.41 0.38 16 41 H 0.09 0.85 7.66 -51.93 -0.40 0.45 16 42 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 43 H 0.08 0.92 8.04 -51.93 -0.42 0.51 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 47 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 48 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 49 H 0.10 2.32 6.80 -51.93 -0.35 1.96 16 50 H 0.07 1.40 7.35 -51.93 -0.38 1.01 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -32.29 391.17 -11.06 -43.35 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.97 Total: 2.56 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -3.27 Total: 0.37 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.40 Total: -50.31 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.28 Total: -18.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.29 -11.06 -43.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074390649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.064 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds