Wall clock time and date at job start Wed Apr 1 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46881 * 239.99892 * 3 2 1 5 5 H 1.48504 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47108 * 120.00115 * 3 2 1 7 7 C 1.38813 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99962 * 194.43742 * 7 2 1 9 9 N 1.36932 * 120.00048 * 14.44246 * 7 2 1 10 10 C 1.47353 * 121.30453 * 26.95188 * 9 7 2 11 11 C 1.53191 * 108.80138 * 129.74694 * 10 9 7 12 12 O 1.43154 * 109.74088 * 51.20989 * 11 10 9 13 13 C 1.42600 * 113.62171 * 298.30614 * 12 11 10 14 14 H 1.09003 * 109.34026 * 304.43168 * 13 12 11 15 15 C 1.52782 * 111.11640 * 183.64288 * 13 12 11 16 16 C 1.53375 * 108.81592 * 177.45104 * 15 13 12 17 17 N 1.46837 * 109.23957 * 53.84414 * 16 15 13 18 18 C 1.34779 * 120.41103 * 127.74541 * 17 16 15 19 19 O 1.21281 * 119.99812 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.99565 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.46626 * 180.02562 * 20 18 17 22 22 C 1.50706 * 109.47041 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99655 * 89.99977 * 22 21 20 24 24 C 1.38241 * 119.99576 * 179.97438 * 23 22 21 25 25 C 1.38229 * 120.00069 * 0.08891 * 24 23 22 26 26 C 1.38234 * 120.00103 * 359.84329 * 25 24 23 27 27 C 1.38230 * 119.99903 * 269.97994 * 22 21 20 28 28 C 1.47133 * 119.18039 * 308.01460 * 17 16 15 29 29 C 1.46880 * 121.30201 * 206.93876 * 9 7 2 30 30 H 1.08991 * 109.66272 * 112.36325 * 29 9 7 31 31 H 0.97006 * 120.00092 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58130 * 9.95306 * 10 9 7 33 33 H 1.09001 * 109.57970 * 249.54492 * 10 9 7 34 34 H 1.08998 * 109.43159 * 291.11952 * 11 10 9 35 35 H 1.09008 * 109.37957 * 171.25543 * 11 10 9 36 36 H 1.09002 * 109.58082 * 57.65811 * 15 13 12 37 37 H 1.08995 * 109.57997 * 297.25396 * 15 13 12 38 38 H 1.09000 * 109.50787 * 293.91046 * 16 15 13 39 39 H 1.08993 * 109.50700 * 173.76832 * 16 15 13 40 40 H 1.08991 * 109.47536 * 60.00165 * 20 18 17 41 41 H 1.09001 * 109.47166 * 299.99301 * 20 18 17 42 42 H 1.09002 * 109.47137 * 60.00313 * 21 20 18 43 43 H 1.08996 * 109.47497 * 299.99826 * 21 20 18 44 44 H 1.07990 * 120.00271 * 359.70153 * 23 22 21 45 45 H 1.07995 * 119.99900 * 179.97438 * 24 23 22 46 46 H 1.08003 * 119.99970 * 179.97438 * 25 24 23 47 47 H 1.08009 * 120.00184 * 180.11306 * 26 25 24 48 48 H 1.07998 * 120.00351 * 359.97187 * 27 22 21 49 49 H 1.09004 * 109.72599 * 172.62315 * 28 17 16 50 50 H 1.08995 * 109.72792 * 293.29433 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0647 -1.2168 0.2337 9 7 1.3580 -2.3694 -0.2947 10 6 0.1600 -2.3812 -1.1526 11 6 0.3456 -3.4389 -2.2452 12 8 0.7243 -4.6855 -1.6520 13 6 1.9632 -4.6304 -0.9480 14 1 2.7427 -4.2662 -1.6172 15 6 2.3557 -6.0077 -0.4159 16 6 3.7213 -5.9007 0.2740 17 7 3.6700 -4.8385 1.2865 18 6 4.0560 -5.0850 2.5541 19 8 4.0110 -4.2020 3.3842 20 6 4.5433 -6.4578 2.9398 21 6 4.9153 -6.4685 4.4239 22 6 5.4021 -7.8416 4.8098 23 6 6.7452 -8.1524 4.7084 24 6 7.1918 -9.4117 5.0630 25 6 6.2951 -10.3606 5.5171 26 6 4.9522 -10.0493 5.6198 27 6 4.5056 -8.7899 5.2655 28 6 3.1865 -3.5033 0.9015 29 6 1.8254 -3.6588 0.2312 30 1 1.0995 -4.0486 0.9447 31 1 -0.4850 0.8401 -0.0004 32 1 0.0296 -1.4011 -1.6114 33 1 -0.7165 -2.6256 -0.5526 34 1 1.1243 -3.1144 -2.9355 35 1 -0.5908 -3.5657 -2.7886 36 1 2.4189 -6.7145 -1.2433 37 1 1.6095 -6.3482 0.3019 38 1 4.4852 -5.6619 -0.4660 39 1 3.9621 -6.8494 0.7536 40 1 5.4192 -6.7133 2.3435 41 1 3.7545 -7.1878 2.7581 42 1 4.0390 -6.2133 5.0199 43 1 5.7039 -5.7386 4.6061 44 1 7.4449 -7.4130 4.3481 45 1 8.2411 -9.6548 4.9834 46 1 6.6440 -11.3446 5.7937 47 1 4.2518 -10.7902 5.9763 48 1 3.4564 -8.5468 5.3455 49 1 3.0887 -2.8775 1.7887 50 1 3.8870 -3.0455 0.2032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074390649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:15 Heat of formation + Delta-G solvation = -49.342112 kcal Electronic energy + Delta-G solvation = -30538.366482 eV Core-core repulsion = 26530.117457 eV Total energy + Delta-G solvation = -4008.249025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.55804 -40.34147 -39.82331 -37.46597 -36.56541 -35.02286 -33.52144 -32.98588 -31.70468 -31.59163 -30.54325 -28.90787 -27.00993 -25.49379 -25.29731 -23.56690 -23.39105 -22.80575 -21.81580 -21.38324 -19.93294 -18.71052 -18.47353 -17.50274 -17.17743 -17.06716 -16.85398 -16.68294 -16.27432 -16.00288 -15.89142 -15.53827 -15.50309 -15.04710 -14.71650 -14.59789 -14.37642 -14.13657 -14.11934 -13.85938 -13.64063 -13.52635 -13.32738 -13.00460 -12.86321 -12.76565 -12.66626 -12.42347 -12.29361 -12.19045 -12.08382 -11.91746 -11.84310 -11.74379 -11.69162 -11.27096 -10.84916 -10.76136 -10.53749 -9.75815 -9.69608 -9.55825 -8.76802 -7.93387 -5.42326 0.48771 0.56414 1.43137 1.44825 1.51356 1.61451 1.92624 2.44950 2.82032 2.93783 3.21556 3.42947 3.47509 3.80988 3.94405 3.96184 4.02319 4.07461 4.17008 4.18039 4.24295 4.26981 4.30831 4.37900 4.40994 4.48164 4.51714 4.55731 4.63163 4.68623 4.70072 4.74282 4.83195 4.86560 4.97740 5.00292 5.09204 5.11658 5.12560 5.24945 5.25385 5.30579 5.44059 5.53338 5.59294 5.64536 5.69603 5.79198 6.18721 6.23597 6.32668 6.42665 7.02439 7.16997 7.70150 8.25008 9.12509 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.002546 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.945646 B =10994.565903 C =12166.767103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.262 4.262 8 H 0.074 0.926 9 N -0.606 5.606 10 C 0.145 3.855 11 C 0.052 3.948 12 O -0.392 6.392 13 C 0.080 3.920 14 H 0.056 0.944 15 C -0.117 4.117 16 C 0.109 3.891 17 N -0.612 5.612 18 C 0.505 3.495 19 O -0.592 6.592 20 C -0.117 4.117 21 C -0.062 4.062 22 C -0.088 4.088 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.129 4.129 28 C 0.138 3.862 29 C 0.134 3.866 30 H 0.002 0.998 31 H 0.251 0.749 32 H 0.072 0.928 33 H -0.005 1.005 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.130 0.870 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.125 0.875 49 H 0.057 0.943 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.003 -23.412 2.634 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.391 4.391 8 H 0.092 0.908 9 N -0.331 5.331 10 C 0.020 3.980 11 C -0.026 4.026 12 O -0.311 6.311 13 C 0.020 3.980 14 H 0.074 0.926 15 C -0.155 4.155 16 C -0.012 4.012 17 N -0.345 5.345 18 C 0.295 3.705 19 O -0.473 6.473 20 C -0.157 4.157 21 C -0.100 4.100 22 C -0.088 4.088 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.143 4.143 27 C -0.147 4.147 28 C 0.015 3.985 29 C 0.027 3.973 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.013 0.987 34 H 0.068 0.932 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.148 0.852 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.155 0.845 48 H 0.143 0.857 49 H 0.075 0.925 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.778 -22.969 3.048 26.460 hybrid contribution -0.352 2.067 0.313 2.120 sum 12.426 -20.902 3.360 24.548 Atomic orbital electron populations 1.70159 1.06639 1.26048 1.55359 1.25842 0.96140 1.01545 1.00931 0.85339 0.77599 0.79141 0.78388 1.19651 1.21816 1.20710 1.19414 0.92333 0.84930 1.42443 0.90837 1.44335 1.31641 1.01954 1.55217 1.21331 0.87339 0.98339 0.91010 1.23175 1.00594 0.84078 0.94705 1.87749 1.39967 1.32619 1.70754 1.22535 0.86146 0.96820 0.92474 0.92590 1.21899 0.97407 0.94628 1.01593 1.22093 0.96791 0.91374 0.90951 1.48394 1.63863 1.11874 1.10361 1.21583 0.76397 0.91662 0.80845 1.90700 1.56511 1.49334 1.50723 1.21690 1.04446 0.91896 0.97637 1.20244 1.01535 0.93514 0.94703 1.19858 0.94187 0.95073 0.99719 1.21278 0.95048 0.97612 1.00464 1.21436 1.00762 0.93257 0.98776 1.21474 0.93437 1.00349 0.99643 1.21422 0.96594 0.96665 0.99667 1.21269 0.99899 0.93817 0.99724 1.21132 0.94147 0.84167 0.99057 1.21363 0.93852 0.87841 0.94288 0.97987 0.93946 0.90941 0.98708 0.93185 0.87323 0.86717 0.91471 0.88979 0.85109 0.85786 0.86468 0.91976 0.91378 0.85211 0.84238 0.84212 0.84480 0.85708 0.92453 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.27 11.06 21.65 0.24 -56.03 16 2 C -0.05 -2.79 5.01 84.86 0.43 -2.36 16 3 Si 0.97 45.73 29.58 68.60 2.03 47.76 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 7 C -0.26 -14.53 8.89 84.03 0.75 -13.78 16 8 H 0.07 3.97 6.26 -2.91 -0.02 3.95 16 9 N -0.61 -31.33 3.04 -674.75 -2.05 -33.38 16 10 C 0.15 7.22 5.42 86.28 0.47 7.69 16 11 C 0.05 2.01 6.95 72.05 0.50 2.51 16 12 O -0.39 -14.71 10.49 -148.98 -1.56 -16.27 16 13 C 0.08 2.73 2.48 30.66 0.08 2.80 16 14 H 0.06 1.90 8.13 -2.39 -0.02 1.89 16 15 C -0.12 -2.70 5.82 30.65 0.18 -2.52 16 16 C 0.11 2.05 6.32 86.44 0.55 2.60 16 17 N -0.61 -18.07 2.99 -819.54 -2.45 -20.52 16 18 C 0.50 15.19 7.69 87.66 0.67 15.86 16 19 O -0.59 -24.28 15.38 -3.03 -0.05 -24.32 16 20 C -0.12 -2.16 4.02 29.85 0.12 -2.04 16 21 C -0.06 -1.29 4.63 29.85 0.14 -1.15 16 22 C -0.09 -1.55 5.13 -19.87 -0.10 -1.65 16 23 C -0.13 -1.95 9.70 22.27 0.22 -1.73 16 24 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 25 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 26 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 27 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 28 C 0.14 5.55 4.47 86.10 0.38 5.94 16 29 C 0.13 5.82 3.01 44.90 0.14 5.96 16 30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 32 H 0.07 3.94 6.15 -2.39 -0.01 3.93 16 33 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 36 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.13 1.40 5.90 -2.39 -0.01 1.39 16 40 H 0.12 1.57 7.95 -2.39 -0.02 1.55 16 41 H 0.12 1.67 7.66 -2.39 -0.02 1.65 16 42 H 0.06 1.51 8.04 -2.39 -0.02 1.49 16 43 H 0.07 1.56 8.04 -2.39 -0.02 1.55 16 44 H 0.13 1.71 8.06 -2.92 -0.02 1.69 16 45 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 46 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 47 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 48 H 0.12 1.89 8.06 -2.91 -0.02 1.87 16 49 H 0.06 2.79 6.80 -2.39 -0.02 2.78 16 50 H 0.07 2.79 7.35 -2.39 -0.02 2.77 16 Total: -1.00 -76.27 391.17 2.47 -73.80 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.92 Total: 17.13 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.40 Total: 11.84 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.26 Total: -109.93 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.61 Total: -40.59 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.27 2.47 -73.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074390649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.454 kcal (2) G-P(sol) polarization free energy of solvation -76.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds