Wall clock time and date at job start Wed Apr 1 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48504 * 109.46629 * 274.98093 * 3 2 1 5 5 H 1.48499 * 109.47387 * 34.98448 * 3 2 1 6 6 H 1.48498 * 109.46738 * 154.98692 * 3 2 1 7 7 C 1.38813 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99315 * 187.05452 * 7 2 1 9 9 N 1.36932 * 120.00686 * 7.05473 * 7 2 1 10 10 C 1.47023 * 125.64573 * 354.78799 * 9 7 2 11 11 C 1.54319 * 107.27182 * 178.98204 * 10 9 7 12 12 H 1.09006 * 110.71919 * 96.17426 * 11 10 9 13 13 O 1.42897 * 110.87806 * 219.37138 * 11 10 9 14 14 C 1.55155 * 102.94430 * 337.80896 * 11 10 9 15 15 H 1.08994 * 111.00330 * 277.38412 * 14 11 10 16 16 N 1.46499 * 111.00650 * 153.57227 * 14 11 10 17 17 C 1.34770 * 120.00195 * 155.00266 * 16 14 11 18 18 O 1.21280 * 120.00193 * 359.72219 * 17 16 14 19 19 C 1.50701 * 120.00205 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.47265 * 179.72185 * 19 17 16 21 21 C 1.53783 * 113.61533 * 274.13573 * 20 19 17 22 22 C 1.54061 * 86.98309 * 270.83925 * 21 20 19 23 23 C 1.50695 * 113.61517 * 220.02342 * 22 21 20 24 24 C 1.38232 * 120.00605 * 37.21822 * 23 22 21 25 25 C 1.38237 * 120.00557 * 179.81100 * 24 23 22 26 26 C 1.38231 * 119.99459 * 0.39728 * 25 24 23 27 27 C 1.38241 * 120.00527 * 359.85702 * 26 25 24 28 28 C 1.38233 * 119.99370 * 359.95815 * 27 26 25 29 29 C 1.53779 * 113.61584 * 176.52765 * 20 19 17 30 30 C 1.47417 * 125.65328 * 174.83841 * 9 7 2 31 31 H 0.96997 * 120.00157 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.88368 * 59.57168 * 10 9 7 33 33 H 1.08996 * 109.88625 * 298.40784 * 10 9 7 34 34 H 0.96700 * 114.00031 * 293.61625 * 13 11 10 35 35 H 0.97005 * 120.00100 * 334.99811 * 16 14 11 36 36 H 1.09002 * 109.46782 * 299.72098 * 19 17 16 37 37 H 1.09004 * 109.47536 * 59.71994 * 19 17 16 38 38 H 1.09001 * 112.84983 * 45.32856 * 20 19 17 39 39 H 1.08998 * 113.61355 * 25.42524 * 21 20 19 40 40 H 1.08991 * 113.61649 * 156.33385 * 21 20 19 41 41 H 1.08995 * 113.61463 * 89.11260 * 22 21 20 42 42 H 1.08009 * 119.99664 * 0.02562 * 24 23 22 43 43 H 1.07998 * 120.00151 * 180.23001 * 25 24 23 44 44 H 1.07996 * 119.99868 * 179.83453 * 26 25 24 45 45 H 1.07994 * 120.00165 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.99848 * 179.97438 * 28 27 26 47 47 H 1.09003 * 113.61823 * 203.66699 * 29 20 19 48 48 H 1.09010 * 113.61352 * 334.56454 * 29 20 19 49 49 H 1.08996 * 110.36806 * 85.24418 * 30 9 7 50 50 H 1.09000 * 110.36604 * 322.92414 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1071 -1.3949 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1154 9 7 1.3333 -2.3837 -0.1446 10 6 -0.1283 -2.5325 -0.2010 11 6 -0.4288 -4.0335 -0.3962 12 1 -0.6375 -4.5126 0.5605 13 8 -1.5183 -4.2212 -1.3016 14 6 0.8910 -4.5758 -1.0055 15 1 0.9253 -4.4018 -2.0809 16 7 1.0645 -5.9983 -0.7008 17 6 1.8202 -6.7723 -1.5046 18 8 2.3526 -6.2924 -2.4829 19 6 1.9982 -8.2356 -1.1915 20 6 2.8884 -8.8803 -2.2559 21 6 2.1177 -9.3530 -3.4998 22 6 1.9258 -10.6963 -2.7703 23 6 2.0696 -11.8973 -3.6690 24 6 3.0141 -11.8963 -4.6784 25 6 3.1487 -12.9995 -5.5004 26 6 2.3331 -14.1006 -5.3182 27 6 1.3850 -14.0997 -4.3121 28 6 1.2531 -12.9980 -3.4878 29 6 3.2028 -10.3605 -1.9819 30 6 1.9494 -3.7172 -0.2690 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5268 -1.9625 -1.0404 33 1 -0.5727 -2.1835 0.7310 34 1 -2.3668 -3.8988 -0.9682 35 1 0.6354 -6.3830 0.0795 36 1 2.4657 -8.3435 -0.2128 37 1 1.0252 -8.7270 -1.1855 38 1 3.7697 -8.2827 -2.4892 39 1 1.1879 -8.8102 -3.6697 40 1 2.7357 -9.4265 -4.3946 41 1 1.0285 -10.7335 -2.1527 42 1 3.6493 -11.0347 -4.8226 43 1 3.8891 -13.0001 -6.2866 44 1 2.4363 -14.9615 -5.9620 45 1 0.7475 -14.9599 -4.1701 46 1 0.5121 -12.9970 -2.7021 47 1 4.1170 -10.7090 -2.4625 48 1 3.1485 -10.6305 -0.9272 49 1 2.1560 -4.1332 0.7170 50 1 2.8656 -3.6584 -0.8565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077263299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:34 Heat of formation + Delta-G solvation = -17.792616 kcal Electronic energy + Delta-G solvation = -29228.176991 eV Core-core repulsion = 25221.296055 eV Total energy + Delta-G solvation = -4006.880936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.63769 -39.53052 -38.32157 -37.50971 -35.07021 -33.98874 -32.15659 -31.65078 -31.18051 -29.55691 -28.16562 -26.90778 -25.85014 -24.92700 -24.20321 -22.84254 -21.59068 -20.76665 -20.44851 -20.10520 -18.58510 -17.64290 -17.15313 -16.96874 -16.46693 -15.88486 -15.65024 -15.46516 -15.16246 -14.74184 -14.43228 -14.36894 -14.00997 -13.80549 -13.59101 -13.45402 -13.08828 -12.87937 -12.68423 -12.60360 -12.53921 -12.30559 -12.04703 -11.86509 -11.56847 -11.38984 -11.37157 -11.25582 -10.91129 -10.82053 -10.76252 -10.51576 -10.19781 -10.15809 -9.89830 -9.87001 -9.69998 -9.28845 -9.18755 -8.89108 -8.79202 -8.60406 -6.91698 -5.78325 -3.11495 1.08185 1.13184 2.86360 3.32504 3.39754 3.44999 3.46311 3.48642 4.34770 4.36528 4.43636 4.47413 4.62997 4.64048 4.70972 4.74049 4.76418 4.86158 4.98348 5.16453 5.22050 5.22938 5.32946 5.37121 5.41775 5.46782 5.54574 5.57835 5.58945 5.67743 5.73361 5.77340 5.82646 5.89062 5.95732 6.02259 6.09660 6.14293 6.20097 6.24187 6.26250 6.45076 6.54158 6.62384 6.74047 6.91009 7.30004 7.47864 7.70379 7.76535 8.11293 8.16807 8.47317 9.14106 9.74554 10.38089 11.33866 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.001766 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.866671 B =15854.719097 C =16322.175046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.068 3.932 12 H 0.056 0.944 13 O -0.563 6.563 14 C 0.138 3.862 15 H 0.104 0.896 16 N -0.718 5.718 17 C 0.512 3.488 18 O -0.536 6.536 19 C -0.123 4.123 20 C -0.095 4.095 21 C -0.121 4.121 22 C -0.079 4.079 23 C -0.065 4.065 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.120 4.120 28 C -0.119 4.119 29 C -0.124 4.124 30 C 0.130 3.870 31 H 0.253 0.747 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.376 0.624 35 H 0.396 0.604 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.023 0.977 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 -27.859 -3.592 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.074 0.926 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.122 0.878 16 N -0.368 5.368 17 C 0.298 3.702 18 O -0.413 6.413 19 C -0.163 4.163 20 C -0.114 4.114 21 C -0.158 4.158 22 C -0.097 4.097 23 C -0.065 4.065 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.138 4.138 28 C -0.137 4.137 29 C -0.161 4.161 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.223 0.777 35 H 0.230 0.770 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.103 0.897 48 H 0.089 0.911 49 H 0.040 0.960 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.828 -27.532 -4.657 27.983 hybrid contribution -0.354 0.936 0.811 1.288 sum 1.475 -26.596 -3.846 26.914 Atomic orbital electron populations 1.69937 1.04981 1.25243 1.56725 1.24840 0.95762 0.97789 1.01875 0.86074 0.78676 0.83287 0.77598 1.21483 1.21730 1.20549 1.19090 0.91260 0.82264 1.43185 0.90124 1.44237 1.01199 1.01013 1.86319 1.21825 0.85500 0.88237 1.01728 1.23459 0.86042 0.98985 0.90717 0.92599 1.86472 1.19206 1.85012 1.46097 1.22235 0.94215 0.78520 1.01757 0.87770 1.45955 1.51559 1.10088 1.29241 1.20567 0.78412 0.88383 0.82871 1.90713 1.47635 1.75253 1.27657 1.21498 1.01735 0.92579 1.00518 1.22015 0.99272 0.95096 0.95026 1.23086 1.01050 0.94461 0.97247 1.21705 0.99235 0.92052 0.96756 1.19812 0.95536 0.95162 0.96002 1.21076 0.98578 0.98431 0.95367 1.21155 0.99408 0.93682 0.99434 1.21134 0.96521 0.98514 0.98547 1.21140 0.98555 0.98315 0.95814 1.21083 0.99463 0.93425 0.99719 1.23076 0.97200 0.95570 1.00254 1.21846 0.95074 0.86318 0.96479 0.93642 0.91991 0.93547 0.77743 0.77041 0.88641 0.88980 0.89199 0.91120 0.89671 0.88542 0.85867 0.86191 0.86358 0.86271 0.86207 0.89702 0.91131 0.95986 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.36 55.49 0.57 -26.19 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.45 10.27 -15.06 -0.15 -6.61 16 8 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 9 N -0.60 -15.39 3.39 -170.08 -0.58 -15.97 16 10 C 0.15 3.62 5.16 -3.07 -0.02 3.61 16 11 C 0.07 1.25 3.97 -24.90 -0.10 1.15 16 12 H 0.06 0.89 8.00 -51.93 -0.42 0.48 16 13 O -0.56 -9.75 13.40 -35.23 -0.47 -10.22 16 14 C 0.14 2.60 3.15 -65.78 -0.21 2.39 16 15 H 0.10 2.30 7.54 -51.93 -0.39 1.90 16 16 N -0.72 -10.31 5.20 -51.73 -0.27 -10.58 16 17 C 0.51 7.41 7.83 -10.99 -0.09 7.32 16 18 O -0.54 -10.11 15.43 5.56 0.09 -10.02 16 19 C -0.12 -1.18 5.38 -27.88 -0.15 -1.33 16 20 C -0.10 -0.94 3.30 -89.81 -0.30 -1.23 16 21 C -0.12 -1.20 7.02 -25.77 -0.18 -1.38 16 22 C -0.08 -0.65 3.64 -90.82 -0.33 -0.98 16 23 C -0.07 -0.57 5.29 -104.63 -0.55 -1.12 16 24 C -0.12 -1.01 8.63 -39.58 -0.34 -1.35 16 25 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 26 C -0.13 -0.98 10.05 -39.58 -0.40 -1.37 16 27 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 28 C -0.12 -0.97 9.71 -39.58 -0.38 -1.35 16 29 C -0.12 -0.96 7.14 -25.92 -0.19 -1.15 16 30 C 0.13 2.78 6.93 -2.53 -0.02 2.77 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.06 1.67 7.22 -51.93 -0.37 1.29 16 33 H 0.05 1.18 7.61 -51.93 -0.40 0.78 16 34 H 0.38 4.92 9.12 45.56 0.42 5.33 16 35 H 0.40 4.39 8.57 -40.82 -0.35 4.04 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.72 7.37 -51.93 -0.38 0.34 16 38 H 0.09 1.05 7.73 -51.93 -0.40 0.65 16 39 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.08 0.83 6.30 -51.93 -0.33 0.51 16 41 H 0.10 0.71 7.65 -51.93 -0.40 0.31 16 42 H 0.12 0.97 6.64 -52.48 -0.35 0.62 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.08 0.65 7.73 -51.93 -0.40 0.25 16 48 H 0.07 0.48 8.10 -51.92 -0.42 0.06 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -34.09 402.14 -11.03 -45.12 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.12 Total: 8.23 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -4.29 Total: -3.56 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.27 Total: -52.73 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.39 Total: -20.25 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.09 -11.03 -45.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077263299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.331 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds