Wall clock time and date at job start Wed Apr 1 2020 02:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48504 * 109.46629 * 274.98093 * 3 2 1 5 5 H 1.48499 * 109.47387 * 34.98448 * 3 2 1 6 6 H 1.48498 * 109.46738 * 154.98692 * 3 2 1 7 7 C 1.38813 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99315 * 187.05452 * 7 2 1 9 9 N 1.36932 * 120.00686 * 7.05473 * 7 2 1 10 10 C 1.47023 * 125.64573 * 354.78799 * 9 7 2 11 11 C 1.54319 * 107.27182 * 178.98204 * 10 9 7 12 12 H 1.09006 * 110.71919 * 96.17426 * 11 10 9 13 13 O 1.42897 * 110.87806 * 219.37138 * 11 10 9 14 14 C 1.55155 * 102.94430 * 337.80896 * 11 10 9 15 15 H 1.08994 * 111.00330 * 277.38412 * 14 11 10 16 16 N 1.46499 * 111.00650 * 153.57227 * 14 11 10 17 17 C 1.34770 * 120.00195 * 155.00266 * 16 14 11 18 18 O 1.21280 * 120.00193 * 359.72219 * 17 16 14 19 19 C 1.50701 * 120.00205 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.47265 * 179.72185 * 19 17 16 21 21 C 1.53783 * 113.61533 * 274.13573 * 20 19 17 22 22 C 1.54061 * 86.98309 * 270.83925 * 21 20 19 23 23 C 1.50695 * 113.61517 * 220.02342 * 22 21 20 24 24 C 1.38232 * 120.00605 * 37.21822 * 23 22 21 25 25 C 1.38237 * 120.00557 * 179.81100 * 24 23 22 26 26 C 1.38231 * 119.99459 * 0.39728 * 25 24 23 27 27 C 1.38241 * 120.00527 * 359.85702 * 26 25 24 28 28 C 1.38233 * 119.99370 * 359.95815 * 27 26 25 29 29 C 1.53779 * 113.61584 * 176.52765 * 20 19 17 30 30 C 1.47417 * 125.65328 * 174.83841 * 9 7 2 31 31 H 0.96997 * 120.00157 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.88368 * 59.57168 * 10 9 7 33 33 H 1.08996 * 109.88625 * 298.40784 * 10 9 7 34 34 H 0.96700 * 114.00031 * 293.61625 * 13 11 10 35 35 H 0.97005 * 120.00100 * 334.99811 * 16 14 11 36 36 H 1.09002 * 109.46782 * 299.72098 * 19 17 16 37 37 H 1.09004 * 109.47536 * 59.71994 * 19 17 16 38 38 H 1.09001 * 112.84983 * 45.32856 * 20 19 17 39 39 H 1.08998 * 113.61355 * 25.42524 * 21 20 19 40 40 H 1.08991 * 113.61649 * 156.33385 * 21 20 19 41 41 H 1.08995 * 113.61463 * 89.11260 * 22 21 20 42 42 H 1.08009 * 119.99664 * 0.02562 * 24 23 22 43 43 H 1.07998 * 120.00151 * 180.23001 * 25 24 23 44 44 H 1.07996 * 119.99868 * 179.83453 * 26 25 24 45 45 H 1.07994 * 120.00165 * 179.97438 * 27 26 25 46 46 H 1.08001 * 119.99848 * 179.97438 * 28 27 26 47 47 H 1.09003 * 113.61823 * 203.66699 * 29 20 19 48 48 H 1.09010 * 113.61352 * 334.56454 * 29 20 19 49 49 H 1.08996 * 110.36806 * 85.24418 * 30 9 7 50 50 H 1.09000 * 110.36604 * 322.92414 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1071 -1.3949 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1154 9 7 1.3333 -2.3837 -0.1446 10 6 -0.1283 -2.5325 -0.2010 11 6 -0.4288 -4.0335 -0.3962 12 1 -0.6375 -4.5126 0.5605 13 8 -1.5183 -4.2212 -1.3016 14 6 0.8910 -4.5758 -1.0055 15 1 0.9253 -4.4018 -2.0809 16 7 1.0645 -5.9983 -0.7008 17 6 1.8202 -6.7723 -1.5046 18 8 2.3526 -6.2924 -2.4829 19 6 1.9982 -8.2356 -1.1915 20 6 2.8884 -8.8803 -2.2559 21 6 2.1177 -9.3530 -3.4998 22 6 1.9258 -10.6963 -2.7703 23 6 2.0696 -11.8973 -3.6690 24 6 3.0141 -11.8963 -4.6784 25 6 3.1487 -12.9995 -5.5004 26 6 2.3331 -14.1006 -5.3182 27 6 1.3850 -14.0997 -4.3121 28 6 1.2531 -12.9980 -3.4878 29 6 3.2028 -10.3605 -1.9819 30 6 1.9494 -3.7172 -0.2690 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5268 -1.9625 -1.0404 33 1 -0.5727 -2.1835 0.7310 34 1 -2.3668 -3.8988 -0.9682 35 1 0.6354 -6.3830 0.0795 36 1 2.4657 -8.3435 -0.2128 37 1 1.0252 -8.7270 -1.1855 38 1 3.7697 -8.2827 -2.4892 39 1 1.1879 -8.8102 -3.6697 40 1 2.7357 -9.4265 -4.3946 41 1 1.0285 -10.7335 -2.1527 42 1 3.6493 -11.0347 -4.8226 43 1 3.8891 -13.0001 -6.2866 44 1 2.4363 -14.9615 -5.9620 45 1 0.7475 -14.9599 -4.1701 46 1 0.5121 -12.9970 -2.7021 47 1 4.1170 -10.7090 -2.4625 48 1 3.1485 -10.6305 -0.9272 49 1 2.1560 -4.1332 0.7170 50 1 2.8656 -3.6584 -0.8565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077263299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:33 Heat of formation + Delta-G solvation = -40.784301 kcal Electronic energy + Delta-G solvation = -29229.173986 eV Core-core repulsion = 25221.296055 eV Total energy + Delta-G solvation = -4007.877931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.46836 -40.63185 -39.48313 -38.56480 -36.68530 -35.50733 -33.68133 -32.70860 -31.74866 -30.70988 -29.71724 -28.52434 -26.54891 -26.38632 -25.35575 -23.44717 -22.59585 -22.21359 -21.86011 -21.44240 -19.39442 -19.03935 -18.49162 -18.16133 -17.64105 -17.30917 -16.65238 -16.40588 -16.17925 -16.04352 -15.74823 -15.49755 -15.09224 -14.96714 -14.58057 -14.49658 -14.29079 -14.16354 -14.01595 -13.73387 -13.55818 -13.26855 -13.21008 -13.18137 -13.02842 -12.78212 -12.75593 -12.50414 -12.12562 -12.08795 -11.94207 -11.90905 -11.55052 -11.43279 -11.23541 -11.07705 -10.90904 -10.77408 -10.70831 -10.10012 -9.76548 -9.48331 -8.97822 -7.91829 -5.27506 0.49687 0.55361 1.43901 1.46966 1.55139 1.72194 2.13186 2.46841 2.90085 3.13534 3.28878 3.55958 3.60342 3.66591 3.75058 3.86986 3.97378 4.04771 4.07260 4.14008 4.14977 4.21426 4.25085 4.34111 4.44556 4.56244 4.57588 4.62774 4.67910 4.71983 4.81208 4.82124 4.89111 4.93631 5.03771 5.14506 5.17373 5.20348 5.23463 5.33738 5.35427 5.44580 5.50161 5.53748 5.64726 5.64828 5.68270 5.84799 6.12147 6.18623 6.63425 6.86456 7.03008 7.35619 7.67848 8.30681 9.18417 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.001766 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.866671 B =15854.719097 C =16322.175046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.979 3.021 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.249 4.249 8 H 0.081 0.919 9 N -0.622 5.622 10 C 0.160 3.840 11 C 0.091 3.909 12 H 0.097 0.903 13 O -0.570 6.570 14 C 0.153 3.847 15 H 0.066 0.934 16 N -0.704 5.704 17 C 0.507 3.493 18 O -0.587 6.587 19 C -0.111 4.111 20 C -0.100 4.100 21 C -0.129 4.129 22 C -0.068 4.068 23 C -0.079 4.079 24 C -0.133 4.133 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.128 4.128 28 C -0.128 4.128 29 C -0.110 4.110 30 C 0.131 3.869 31 H 0.250 0.750 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.396 0.604 35 H 0.418 0.582 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.045 0.955 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -30.547 -2.107 30.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.378 4.378 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.034 3.966 11 C 0.031 3.969 12 H 0.114 0.886 13 O -0.377 6.377 14 C 0.046 3.954 15 H 0.085 0.915 16 N -0.356 5.356 17 C 0.295 3.705 18 O -0.466 6.466 19 C -0.150 4.150 20 C -0.119 4.119 21 C -0.166 4.166 22 C -0.086 4.086 23 C -0.079 4.079 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.146 4.146 28 C -0.146 4.146 29 C -0.147 4.147 30 C 0.005 3.995 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.246 0.754 35 H 0.255 0.745 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.100 0.900 48 H 0.110 0.890 49 H 0.062 0.938 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.505 -30.272 -3.139 30.472 hybrid contribution -0.245 1.743 0.267 1.781 sum 1.260 -28.529 -2.872 28.701 Atomic orbital electron populations 1.70134 1.06187 1.25577 1.57515 1.25670 0.96719 1.00972 1.02043 0.85062 0.77983 0.79084 0.77223 1.21731 1.21548 1.19174 1.19443 0.91694 0.83696 1.42978 0.90073 1.44510 1.02304 1.01945 1.86261 1.21633 0.84399 0.91739 0.98836 1.23164 0.86222 0.95090 0.92459 0.88577 1.86439 1.20051 1.84790 1.46460 1.21667 0.93685 0.80943 0.99147 0.91544 1.45743 1.51752 1.07973 1.30162 1.21537 0.76949 0.90233 0.81732 1.90705 1.49506 1.76534 1.29892 1.21545 1.03441 0.88384 1.01632 1.22018 0.98429 0.96153 0.95286 1.23101 1.00128 0.95958 0.97456 1.21667 0.99999 0.90571 0.96349 1.19939 0.95911 0.95692 0.96312 1.21210 0.99049 0.98779 0.96005 1.21401 0.99961 0.93758 0.99750 1.21438 0.96266 0.98942 0.98838 1.21457 0.98690 0.98892 0.95522 1.21342 0.99625 0.93329 1.00284 1.22990 0.96985 0.93302 1.01422 1.21943 0.94974 0.85216 0.97414 0.94109 0.96194 0.95706 0.75424 0.74474 0.85484 0.86131 0.91847 0.92863 0.90524 0.86957 0.86115 0.85012 0.84561 0.84328 0.84599 0.89973 0.89032 0.93751 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.44 10.36 21.65 0.22 -56.21 16 2 C -0.06 -3.47 5.48 84.86 0.46 -3.01 16 3 Si 0.98 46.21 29.56 68.60 2.03 48.24 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.25 -14.29 10.27 84.03 0.86 -13.43 16 8 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 9 N -0.62 -32.59 3.39 -692.01 -2.35 -34.94 16 10 C 0.16 7.74 5.16 86.73 0.45 8.18 16 11 C 0.09 3.22 3.97 31.78 0.13 3.35 16 12 H 0.10 2.72 8.00 -2.38 -0.02 2.70 16 13 O -0.57 -18.96 13.40 -148.98 -2.00 -20.95 16 14 C 0.15 5.69 3.15 46.38 0.15 5.83 16 15 H 0.07 3.02 7.54 -2.39 -0.02 3.00 16 16 N -0.70 -18.73 5.20 -435.98 -2.27 -21.00 16 17 C 0.51 14.02 7.83 87.66 0.69 14.71 16 18 O -0.59 -22.61 15.43 -3.03 -0.05 -22.66 16 19 C -0.11 -1.79 5.38 29.85 0.16 -1.63 16 20 C -0.10 -1.84 3.30 -10.27 -0.03 -1.88 16 21 C -0.13 -2.52 7.02 31.22 0.22 -2.30 16 22 C -0.07 -0.97 3.64 -10.92 -0.04 -1.01 16 23 C -0.08 -1.26 5.29 -19.87 -0.11 -1.36 16 24 C -0.13 -2.23 8.63 22.27 0.19 -2.04 16 25 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 26 C -0.14 -1.86 10.05 22.27 0.22 -1.63 16 27 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 28 C -0.13 -1.82 9.71 22.27 0.22 -1.60 16 29 C -0.11 -1.46 7.14 31.12 0.22 -1.23 16 30 C 0.13 5.62 6.93 86.86 0.60 6.22 16 31 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.02 1.12 7.22 -2.38 -0.02 1.10 16 33 H 0.02 1.29 7.61 -2.39 -0.02 1.27 16 34 H 0.40 9.67 9.12 -74.06 -0.68 9.00 16 35 H 0.42 7.59 8.57 -92.70 -0.79 6.80 16 36 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.12 1.35 7.37 -2.38 -0.02 1.33 16 38 H 0.06 1.51 7.73 -2.39 -0.02 1.50 16 39 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 40 H 0.08 1.58 6.30 -2.39 -0.02 1.57 16 41 H 0.11 1.25 7.65 -2.39 -0.02 1.23 16 42 H 0.12 1.97 6.64 -2.91 -0.02 1.95 16 43 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 44 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 45 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 47 H 0.08 1.15 7.73 -2.39 -0.02 1.14 16 48 H 0.09 0.87 8.10 -2.38 -0.02 0.85 16 49 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -78.03 402.14 -0.08 -78.11 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.51 Total: 25.44 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 4.84 Total: 3.97 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.39 Total: -112.15 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -2.04 Total: -43.61 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -78.03 -0.08 -78.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077263299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.330 kcal (2) G-P(sol) polarization free energy of solvation -78.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds