Wall clock time and date at job start Wed Apr 1 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99848 * 2 1 4 4 H 1.48492 * 109.47002 * 269.99768 * 3 2 1 5 5 H 1.48498 * 109.47113 * 30.00036 * 3 2 1 6 6 H 1.48502 * 109.46940 * 149.99732 * 3 2 1 7 7 C 1.38814 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.65174 * 180.02562 * 9 7 2 11 11 C 1.54316 * 107.27238 * 178.90401 * 10 9 7 12 12 H 1.08999 * 110.72111 * 96.34620 * 11 10 9 13 13 N 1.46502 * 110.72266 * 219.44320 * 11 10 9 14 14 C 1.34777 * 119.99780 * 271.16033 * 13 11 10 15 15 O 1.21281 * 120.00116 * 359.97438 * 14 13 11 16 16 C 1.50705 * 119.99946 * 179.97438 * 14 13 11 17 17 C 1.52991 * 109.47362 * 180.02562 * 16 14 13 18 18 C 1.53781 * 113.61529 * 185.00135 * 17 16 14 19 19 C 1.53786 * 87.17350 * 219.97788 * 18 17 16 20 20 C 1.50690 * 113.61518 * 140.02616 * 19 18 17 21 21 C 1.38242 * 119.99897 * 299.72284 * 20 19 18 22 22 C 1.38231 * 119.99982 * 179.81377 * 21 20 19 23 23 C 1.38241 * 119.99989 * 0.39442 * 22 21 20 24 24 C 1.38229 * 119.99948 * 359.86101 * 23 22 21 25 25 C 1.38233 * 120.00317 * 359.95083 * 24 23 22 26 26 C 1.53781 * 113.61611 * 87.50329 * 17 16 14 27 27 C 1.55156 * 103.10621 * 337.89940 * 11 10 9 28 28 H 1.09000 * 111.00945 * 153.48875 * 27 11 10 29 29 O 1.42907 * 111.00106 * 277.33819 * 27 11 10 30 30 C 1.47431 * 125.64590 * 359.96266 * 9 7 2 31 31 H 0.96999 * 119.99720 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.87717 * 59.48595 * 10 9 7 33 33 H 1.08991 * 110.00796 * 298.39702 * 10 9 7 34 34 H 0.96997 * 120.00167 * 91.15868 * 13 11 10 35 35 H 1.08997 * 109.46526 * 59.99901 * 16 14 13 36 36 H 1.09002 * 109.46938 * 300.00500 * 16 14 13 37 37 H 1.08999 * 112.90686 * 316.25472 * 17 16 14 38 38 H 1.09002 * 113.61445 * 334.56787 * 18 17 16 39 39 H 1.09002 * 113.61408 * 105.38518 * 18 17 16 40 40 H 1.09000 * 113.60973 * 270.92699 * 19 18 17 41 41 H 1.07995 * 119.99637 * 359.97438 * 21 20 19 42 42 H 1.08000 * 120.00063 * 180.23011 * 22 21 20 43 43 H 1.07997 * 119.99621 * 179.83515 * 23 22 21 44 44 H 1.07998 * 120.00169 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.00575 * 180.02562 * 25 24 23 46 46 H 1.09005 * 113.61471 * 254.53285 * 26 17 16 47 47 H 1.08996 * 113.61178 * 25.34627 * 26 17 16 48 48 H 0.96696 * 114.00187 * 179.97438 * 29 27 11 49 49 H 1.09001 * 110.36793 * 322.99577 * 30 9 7 50 50 H 1.08991 * 110.36982 * 85.21411 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 1.9318 -3.7275 0.0028 11 6 0.7784 -4.7523 0.0319 12 1 0.5473 -5.1016 -0.9744 13 7 1.1089 -5.8800 0.9067 14 6 1.7585 -6.9510 0.4092 15 8 2.0691 -6.9814 -0.7628 16 6 2.0990 -8.1108 1.3093 17 6 2.8295 -9.1856 0.5019 18 6 3.1154 -10.4682 1.3007 19 6 4.4860 -10.5054 0.6042 20 6 5.6142 -10.9190 1.5136 21 6 5.9062 -10.1691 2.6377 22 6 6.9386 -10.5506 3.4740 23 6 7.6844 -11.6773 3.1819 24 6 7.3958 -12.4241 2.0550 25 6 6.3609 -12.0449 1.2208 26 6 4.3521 -8.9798 0.4380 27 6 -0.4045 -3.9343 0.6140 28 1 -1.3604 -4.3368 0.2788 29 8 -0.3425 -3.8885 2.0410 30 6 -0.1416 -2.5331 0.0030 31 1 -0.4850 0.8401 -0.0004 32 1 2.5588 -3.8498 0.8861 33 1 2.5292 -3.8673 -0.8980 34 1 0.8602 -5.8559 1.8440 35 1 1.1825 -8.5287 1.7257 36 1 2.7418 -7.7657 2.1192 37 1 2.3726 -9.3696 -0.4705 38 1 3.1768 -10.3077 2.3770 39 1 2.4670 -11.3027 1.0335 40 1 4.4812 -11.0496 -0.3403 41 1 5.3260 -9.2867 2.8638 42 1 7.1643 -9.9668 4.3541 43 1 8.4927 -11.9738 3.8339 44 1 7.9787 -13.3042 1.8266 45 1 6.1351 -12.6286 0.3407 46 1 4.7031 -8.6131 -0.5266 47 1 4.7514 -8.4111 1.2778 48 1 -1.0613 -3.3876 2.4501 49 1 -0.5988 -1.7581 0.6182 50 1 -0.5284 -2.4859 -1.0148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083585363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:37 Heat of formation + Delta-G solvation = -16.398053 kcal Electronic energy + Delta-G solvation = -29432.952728 eV Core-core repulsion = 25426.132265 eV Total energy + Delta-G solvation = -4006.820463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.51890 -39.51652 -38.26136 -37.49007 -34.72770 -33.88668 -32.20355 -31.60806 -31.13731 -29.72104 -28.34810 -26.87965 -25.81050 -24.75492 -24.05975 -22.87534 -21.50201 -20.61819 -20.13454 -19.67766 -19.33067 -17.46786 -17.18362 -16.68625 -16.63567 -15.87349 -15.46179 -15.32832 -15.11422 -14.80285 -14.60975 -14.14732 -14.07270 -13.85032 -13.62456 -13.36248 -13.00474 -12.93239 -12.83570 -12.62461 -12.44498 -12.19400 -11.80615 -11.71624 -11.48391 -11.32907 -11.32219 -11.06972 -10.85382 -10.70605 -10.60958 -10.46754 -10.36606 -10.32309 -10.03695 -9.83643 -9.55517 -9.21094 -9.15991 -8.86286 -8.69754 -8.62841 -6.84595 -5.69338 -3.08972 1.10929 1.16023 2.89785 3.39261 3.42055 3.44875 3.47285 3.51931 4.35228 4.39548 4.46801 4.51244 4.64447 4.68382 4.75169 4.79225 4.85866 4.90821 5.04887 5.19307 5.28710 5.31554 5.34878 5.38922 5.45240 5.49375 5.52260 5.56527 5.64760 5.70365 5.74845 5.78589 5.83095 5.93844 5.97402 6.04778 6.09440 6.22894 6.27573 6.29513 6.33424 6.50052 6.59924 6.71951 6.76814 6.98089 7.26488 7.56660 7.72075 7.88653 8.12308 8.31561 8.54252 9.18441 9.79444 10.43011 11.35813 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.001985 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.245358 B =14101.289643 C =15046.407375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.014 4.014 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.132 3.868 11 C 0.143 3.857 12 H 0.099 0.901 13 N -0.711 5.711 14 C 0.508 3.492 15 O -0.545 6.545 16 C -0.131 4.131 17 C -0.092 4.092 18 C -0.125 4.125 19 C -0.077 4.077 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.124 4.124 27 C 0.067 3.933 28 H 0.058 0.942 29 O -0.561 6.561 30 C 0.127 3.873 31 H 0.252 0.748 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.407 0.593 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.379 0.621 49 H 0.115 0.885 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -24.501 7.059 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.005 3.995 11 C 0.037 3.963 12 H 0.117 0.883 13 N -0.362 5.362 14 C 0.294 3.706 15 O -0.423 6.423 16 C -0.171 4.171 17 C -0.111 4.111 18 C -0.162 4.162 19 C -0.096 4.096 20 C -0.065 4.065 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.161 4.161 27 C 0.006 3.994 28 H 0.076 0.924 29 O -0.367 6.367 30 C 0.001 3.999 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.242 0.758 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.226 0.774 49 H 0.133 0.867 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.395 -24.644 6.110 26.183 hybrid contribution -0.092 1.267 0.464 1.352 sum 6.303 -23.378 6.574 25.089 Atomic orbital electron populations 1.69724 1.04895 1.24779 1.58268 1.24766 0.95785 0.97711 1.02592 0.86027 0.78515 0.83137 0.77578 1.21627 1.21665 1.20704 1.19099 0.90576 0.82307 1.42375 0.90430 1.44284 1.01431 0.99732 1.86829 1.21582 0.93915 0.85578 0.98419 1.22106 0.95070 0.85166 0.93948 0.88347 1.45896 1.58660 1.17541 1.14097 1.20685 0.77456 0.83627 0.88832 1.90685 1.53153 1.80947 1.17466 1.21670 1.02296 0.94438 0.98684 1.22279 0.95569 0.93630 0.99578 1.23100 0.95571 0.97805 0.99742 1.21567 0.92575 0.97588 0.97830 1.19795 0.96356 0.94860 0.95445 1.21068 0.97910 0.99790 0.94656 1.21167 0.95900 0.97003 0.99550 1.21135 1.00020 0.95880 0.97663 1.21132 0.97756 0.99803 0.95140 1.21075 0.95954 0.96920 0.99776 1.23165 0.95783 0.94271 1.02927 1.23622 0.95645 0.98734 0.81389 0.92411 1.86234 1.54575 1.76867 1.19043 1.22623 0.85916 0.92438 0.98873 0.93747 0.95388 0.95523 0.75793 0.88940 0.89015 0.88035 0.89819 0.91236 0.88509 0.85898 0.86130 0.86341 0.86292 0.86231 0.90838 0.89882 0.77377 0.86747 0.96052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.56 10.09 55.49 0.56 -26.00 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 3 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.49 3.40 -169.95 -0.58 -16.06 16 10 C 0.13 2.97 7.00 -3.07 -0.02 2.95 16 11 C 0.14 2.65 3.15 -66.10 -0.21 2.44 16 12 H 0.10 1.90 7.62 -51.93 -0.40 1.50 16 13 N -0.71 -10.85 5.08 -52.03 -0.26 -11.12 16 14 C 0.51 7.50 7.83 -10.98 -0.09 7.41 16 15 O -0.54 -10.06 15.44 5.56 0.09 -9.98 16 16 C -0.13 -1.32 5.54 -27.89 -0.15 -1.48 16 17 C -0.09 -0.91 3.15 -89.81 -0.28 -1.20 16 18 C -0.12 -0.99 7.10 -25.92 -0.18 -1.18 16 19 C -0.08 -0.67 3.99 -90.82 -0.36 -1.03 16 20 C -0.06 -0.59 5.29 -104.62 -0.55 -1.14 16 21 C -0.12 -1.05 8.63 -39.58 -0.34 -1.39 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.13 -1.03 10.05 -39.58 -0.40 -1.42 16 24 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 25 C -0.12 -1.02 9.71 -39.58 -0.38 -1.40 16 26 C -0.12 -1.27 7.01 -25.78 -0.18 -1.45 16 27 C 0.07 1.21 4.31 -24.48 -0.11 1.10 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 O -0.56 -9.42 12.23 -35.23 -0.43 -9.85 16 30 C 0.13 2.99 5.62 -2.42 -0.01 2.97 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 5.56 7.58 -40.82 -0.31 5.25 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.81 7.84 -51.93 -0.41 0.41 16 37 H 0.10 1.16 7.67 -51.93 -0.40 0.76 16 38 H 0.08 0.63 7.69 -51.93 -0.40 0.23 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.12 1.00 6.65 -52.49 -0.35 0.65 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 0.83 6.07 -51.93 -0.32 0.51 16 48 H 0.38 5.10 9.12 45.56 0.42 5.52 16 49 H 0.12 2.96 5.87 -51.93 -0.31 2.65 16 50 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -33.07 400.79 -11.01 -44.08 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.07 Total: 10.00 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -4.32 Total: -4.29 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.28 Total: -53.18 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.35 Total: -19.83 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.07 -11.01 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083585363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.683 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds