Wall clock time and date at job start Wed Apr 1 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99848 * 2 1 4 4 H 1.48492 * 109.47002 * 269.99768 * 3 2 1 5 5 H 1.48498 * 109.47113 * 30.00036 * 3 2 1 6 6 H 1.48502 * 109.46940 * 149.99732 * 3 2 1 7 7 C 1.38814 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.65174 * 180.02562 * 9 7 2 11 11 C 1.54316 * 107.27238 * 178.90401 * 10 9 7 12 12 H 1.08999 * 110.72111 * 96.34620 * 11 10 9 13 13 N 1.46502 * 110.72266 * 219.44320 * 11 10 9 14 14 C 1.34777 * 119.99780 * 271.16033 * 13 11 10 15 15 O 1.21281 * 120.00116 * 359.97438 * 14 13 11 16 16 C 1.50705 * 119.99946 * 179.97438 * 14 13 11 17 17 C 1.52991 * 109.47362 * 180.02562 * 16 14 13 18 18 C 1.53781 * 113.61529 * 185.00135 * 17 16 14 19 19 C 1.53786 * 87.17350 * 219.97788 * 18 17 16 20 20 C 1.50690 * 113.61518 * 140.02616 * 19 18 17 21 21 C 1.38242 * 119.99897 * 299.72284 * 20 19 18 22 22 C 1.38231 * 119.99982 * 179.81377 * 21 20 19 23 23 C 1.38241 * 119.99989 * 0.39442 * 22 21 20 24 24 C 1.38229 * 119.99948 * 359.86101 * 23 22 21 25 25 C 1.38233 * 120.00317 * 359.95083 * 24 23 22 26 26 C 1.53781 * 113.61611 * 87.50329 * 17 16 14 27 27 C 1.55156 * 103.10621 * 337.89940 * 11 10 9 28 28 H 1.09000 * 111.00945 * 153.48875 * 27 11 10 29 29 O 1.42907 * 111.00106 * 277.33819 * 27 11 10 30 30 C 1.47431 * 125.64590 * 359.96266 * 9 7 2 31 31 H 0.96999 * 119.99720 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.87717 * 59.48595 * 10 9 7 33 33 H 1.08991 * 110.00796 * 298.39702 * 10 9 7 34 34 H 0.96997 * 120.00167 * 91.15868 * 13 11 10 35 35 H 1.08997 * 109.46526 * 59.99901 * 16 14 13 36 36 H 1.09002 * 109.46938 * 300.00500 * 16 14 13 37 37 H 1.08999 * 112.90686 * 316.25472 * 17 16 14 38 38 H 1.09002 * 113.61445 * 334.56787 * 18 17 16 39 39 H 1.09002 * 113.61408 * 105.38518 * 18 17 16 40 40 H 1.09000 * 113.60973 * 270.92699 * 19 18 17 41 41 H 1.07995 * 119.99637 * 359.97438 * 21 20 19 42 42 H 1.08000 * 120.00063 * 180.23011 * 22 21 20 43 43 H 1.07997 * 119.99621 * 179.83515 * 23 22 21 44 44 H 1.07998 * 120.00169 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.00575 * 180.02562 * 25 24 23 46 46 H 1.09005 * 113.61471 * 254.53285 * 26 17 16 47 47 H 1.08996 * 113.61178 * 25.34627 * 26 17 16 48 48 H 0.96696 * 114.00187 * 179.97438 * 29 27 11 49 49 H 1.09001 * 110.36793 * 322.99577 * 30 9 7 50 50 H 1.08991 * 110.36982 * 85.21411 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 1.9318 -3.7275 0.0028 11 6 0.7784 -4.7523 0.0319 12 1 0.5473 -5.1016 -0.9744 13 7 1.1089 -5.8800 0.9067 14 6 1.7585 -6.9510 0.4092 15 8 2.0691 -6.9814 -0.7628 16 6 2.0990 -8.1108 1.3093 17 6 2.8295 -9.1856 0.5019 18 6 3.1154 -10.4682 1.3007 19 6 4.4860 -10.5054 0.6042 20 6 5.6142 -10.9190 1.5136 21 6 5.9062 -10.1691 2.6377 22 6 6.9386 -10.5506 3.4740 23 6 7.6844 -11.6773 3.1819 24 6 7.3958 -12.4241 2.0550 25 6 6.3609 -12.0449 1.2208 26 6 4.3521 -8.9798 0.4380 27 6 -0.4045 -3.9343 0.6140 28 1 -1.3604 -4.3368 0.2788 29 8 -0.3425 -3.8885 2.0410 30 6 -0.1416 -2.5331 0.0030 31 1 -0.4850 0.8401 -0.0004 32 1 2.5588 -3.8498 0.8861 33 1 2.5292 -3.8673 -0.8980 34 1 0.8602 -5.8559 1.8440 35 1 1.1825 -8.5287 1.7257 36 1 2.7418 -7.7657 2.1192 37 1 2.3726 -9.3696 -0.4705 38 1 3.1768 -10.3077 2.3770 39 1 2.4670 -11.3027 1.0335 40 1 4.4812 -11.0496 -0.3403 41 1 5.3260 -9.2867 2.8638 42 1 7.1643 -9.9668 4.3541 43 1 8.4927 -11.9738 3.8339 44 1 7.9787 -13.3042 1.8266 45 1 6.1351 -12.6286 0.3407 46 1 4.7031 -8.6131 -0.5266 47 1 4.7514 -8.4111 1.2778 48 1 -1.0613 -3.3876 2.4501 49 1 -0.5988 -1.7581 0.6182 50 1 -0.5284 -2.4859 -1.0148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083585363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:36 Heat of formation + Delta-G solvation = -37.604500 kcal Electronic energy + Delta-G solvation = -29433.872309 eV Core-core repulsion = 25426.132265 eV Total energy + Delta-G solvation = -4007.740044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.38109 -40.64313 -39.45121 -38.52983 -36.37265 -35.37877 -33.65043 -32.78673 -31.73586 -30.82667 -29.91807 -28.54398 -26.54014 -26.44439 -25.05731 -23.49122 -22.63148 -22.18451 -21.43662 -20.99088 -20.05920 -19.22698 -18.25441 -17.99588 -17.68985 -16.92439 -16.76574 -16.51869 -16.25718 -15.92029 -15.87306 -15.56832 -15.13113 -14.80622 -14.63631 -14.55207 -14.34787 -14.19735 -13.95753 -13.72672 -13.41213 -13.29867 -13.22319 -12.95955 -12.88838 -12.75372 -12.47983 -12.24070 -12.14971 -12.12325 -11.96395 -11.90442 -11.84474 -11.41621 -11.26363 -11.06522 -10.93562 -10.74312 -10.66845 -10.03117 -9.76889 -9.48750 -8.91703 -7.82063 -5.25489 0.49315 0.55057 1.45164 1.46892 1.55591 1.72219 2.20465 2.48413 2.89832 3.22023 3.28755 3.57670 3.65088 3.71443 3.75973 3.85505 3.96048 3.99497 4.09900 4.15305 4.17908 4.24334 4.31309 4.33828 4.46486 4.50864 4.64939 4.69029 4.70046 4.74334 4.78168 4.85050 4.88680 4.96859 4.99503 5.04754 5.17978 5.19051 5.21586 5.33129 5.34783 5.44728 5.53519 5.59447 5.65504 5.68282 5.70621 5.84313 6.18084 6.24521 6.68927 6.91582 7.07414 7.36546 7.71834 8.34759 9.19871 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.001985 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.245358 B =14101.289643 C =15046.407375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.062 4.062 3 Si 0.981 3.019 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.616 5.616 10 C 0.133 3.867 11 C 0.154 3.846 12 H 0.092 0.908 13 N -0.702 5.702 14 C 0.505 3.495 15 O -0.586 6.586 16 C -0.121 4.121 17 C -0.093 4.093 18 C -0.108 4.108 19 C -0.072 4.072 20 C -0.077 4.077 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.132 4.132 26 C -0.131 4.131 27 C 0.091 3.909 28 H 0.094 0.906 29 O -0.562 6.562 30 C 0.126 3.874 31 H 0.250 0.750 32 H 0.022 0.978 33 H 0.006 0.994 34 H 0.418 0.582 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.047 0.953 47 H 0.085 0.915 48 H 0.396 0.604 49 H 0.091 0.909 50 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.630 -26.120 8.922 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.342 5.342 10 C 0.006 3.994 11 C 0.047 3.953 12 H 0.110 0.890 13 N -0.354 5.354 14 C 0.293 3.707 15 O -0.466 6.466 16 C -0.160 4.160 17 C -0.112 4.112 18 C -0.146 4.146 19 C -0.090 4.090 20 C -0.077 4.077 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.155 4.155 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.168 4.168 27 C 0.030 3.970 28 H 0.111 0.889 29 O -0.370 6.370 30 C 0.000 4.000 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.256 0.744 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.148 0.852 46 H 0.066 0.934 47 H 0.104 0.896 48 H 0.246 0.754 49 H 0.109 0.891 50 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 6.343 -26.291 8.012 28.207 hybrid contribution -0.020 1.775 -0.143 1.781 sum 6.323 -24.516 7.869 26.513 Atomic orbital electron populations 1.69947 1.05887 1.25228 1.58361 1.25574 0.96802 1.00679 1.02380 0.85039 0.77597 0.79013 0.77409 1.21493 1.21308 1.19846 1.19382 0.90815 0.83817 1.43052 0.90973 1.44555 1.02685 1.00276 1.86724 1.21631 0.95201 0.85599 0.96990 1.21735 0.93555 0.85404 0.94593 0.89034 1.45792 1.58802 1.16622 1.14194 1.21563 0.76056 0.84185 0.88856 1.90677 1.54561 1.81735 1.19649 1.21731 1.04049 0.92290 0.97954 1.22227 0.94893 0.94805 0.99281 1.23020 0.94836 0.96778 0.99925 1.21519 0.93251 0.96163 0.98107 1.19889 0.96751 0.95363 0.95694 1.21224 0.98457 1.00116 0.94928 1.21430 0.95824 0.97425 1.00027 1.21443 1.00379 0.95678 0.97953 1.21428 0.97693 1.00430 0.94986 1.21315 0.96175 0.97063 1.00414 1.23195 0.96362 0.95628 1.01647 1.23295 0.96807 0.94947 0.81916 0.88858 1.86200 1.55840 1.77035 1.17910 1.22540 0.84468 0.95359 0.97597 0.94039 0.96004 0.97589 0.74442 0.85865 0.87077 0.89836 0.88691 0.90054 0.88385 0.85443 0.84773 0.84518 0.84445 0.85154 0.93372 0.89625 0.75414 0.89098 0.98382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.94 10.09 21.65 0.22 -54.72 16 2 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 3 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.24 -14.00 10.27 84.04 0.86 -13.14 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.62 -32.77 3.40 -691.60 -2.35 -35.12 16 10 C 0.13 6.10 7.00 86.73 0.61 6.71 16 11 C 0.15 5.65 3.15 46.18 0.15 5.80 16 12 H 0.09 3.53 7.62 -2.39 -0.02 3.51 16 13 N -0.70 -20.32 5.08 -436.92 -2.22 -22.54 16 14 C 0.50 14.32 7.83 87.66 0.69 15.01 16 15 O -0.59 -21.83 15.44 -3.03 -0.05 -21.88 16 16 C -0.12 -2.15 5.54 29.85 0.17 -1.98 16 17 C -0.09 -1.73 3.15 -10.27 -0.03 -1.77 16 18 C -0.11 -1.48 7.10 31.12 0.22 -1.26 16 19 C -0.07 -1.18 3.99 -10.92 -0.04 -1.23 16 20 C -0.08 -1.32 5.29 -19.87 -0.11 -1.42 16 21 C -0.13 -2.16 8.63 22.27 0.19 -1.97 16 22 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 23 C -0.14 -1.94 10.05 22.27 0.22 -1.72 16 24 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 25 C -0.13 -2.09 9.71 22.27 0.22 -1.87 16 26 C -0.13 -2.65 7.01 31.21 0.22 -2.43 16 27 C 0.09 3.18 4.31 32.06 0.14 3.32 16 28 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 29 O -0.56 -17.59 12.23 -148.98 -1.82 -19.41 16 30 C 0.13 6.00 5.62 86.92 0.49 6.49 16 31 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.02 1.02 8.03 -2.38 -0.02 1.01 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.42 10.28 7.58 -92.71 -0.70 9.58 16 35 H 0.12 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.62 7.84 -2.39 -0.02 1.60 16 37 H 0.08 1.89 7.67 -2.39 -0.02 1.87 16 38 H 0.09 1.12 7.69 -2.39 -0.02 1.11 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 1.55 8.10 -2.39 -0.02 1.53 16 41 H 0.13 1.90 6.65 -2.91 -0.02 1.88 16 42 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 45 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 46 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.09 1.66 6.07 -2.39 -0.01 1.64 16 48 H 0.40 9.69 9.12 -74.06 -0.68 9.02 16 49 H 0.09 4.78 5.87 -2.39 -0.01 4.77 16 50 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -73.47 400.79 0.29 -73.18 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.42 Total: 30.31 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.90 Total: 2.14 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -4.35 Total: -112.38 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -1.87 Total: -41.29 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -73.47 0.29 -73.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083585363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.579 kcal (2) G-P(sol) polarization free energy of solvation -73.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds