Wall clock time and date at job start Wed Apr 1 2020 02:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46794 * 300.00137 * 3 2 1 6 6 H 1.48496 * 109.46731 * 60.00263 * 3 2 1 7 7 C 1.38813 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.65152 * 179.97438 * 9 7 2 11 11 C 1.55121 * 104.94414 * 204.04319 * 10 9 7 12 12 H 1.09003 * 110.93564 * 81.21616 * 11 10 9 13 13 N 1.46500 * 111.16052 * 205.13204 * 11 10 9 14 14 C 1.34780 * 120.00075 * 267.17152 * 13 11 10 15 15 O 1.21556 * 119.99923 * 359.97438 * 14 13 11 16 16 C 1.47839 * 120.00154 * 180.02562 * 14 13 11 17 17 C 1.39578 * 120.14540 * 359.71976 * 16 14 13 18 18 C 1.37957 * 119.85365 * 179.79271 * 17 16 14 19 19 C 1.38356 * 120.14439 * 0.48985 * 18 17 16 20 20 C 1.50698 * 119.85618 * 179.72516 * 19 18 17 21 21 C 1.54269 * 110.03446 * 57.92276 * 20 19 18 22 22 C 1.54964 * 104.16084 * 217.14194 * 21 20 19 23 23 C 1.54893 * 102.77837 * 37.88723 * 22 21 20 24 24 C 1.53879 * 110.02982 * 300.71052 * 20 19 18 25 25 C 1.38365 * 120.29504 * 359.73942 * 19 18 17 26 26 C 1.37959 * 120.13959 * 0.02790 * 25 19 18 27 27 C 1.55153 * 101.48662 * 323.22344 * 11 10 9 28 28 H 1.09002 * 110.72030 * 153.73613 * 27 11 10 29 29 O 1.42895 * 110.71918 * 276.83166 * 27 11 10 30 30 C 1.47026 * 125.64787 * 0.03422 * 9 7 2 31 31 H 0.97002 * 120.00279 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.36380 * 323.01008 * 10 9 7 33 33 H 1.09004 * 110.36441 * 85.21640 * 10 9 7 34 34 H 0.96998 * 120.00277 * 87.17226 * 13 11 10 35 35 H 1.08001 * 120.06754 * 0.02562 * 17 16 14 36 36 H 1.07995 * 119.92632 * 180.23241 * 18 17 16 37 37 H 1.09003 * 110.02057 * 179.31813 * 20 19 18 38 38 H 1.09005 * 110.48354 * 335.78569 * 21 20 19 39 39 H 1.09000 * 110.48474 * 98.43150 * 21 20 19 40 40 H 1.09005 * 110.72225 * 279.57508 * 22 21 20 41 41 H 1.08998 * 110.92251 * 156.29821 * 22 21 20 42 42 H 1.09004 * 110.48366 * 203.40327 * 23 22 21 43 43 H 1.09003 * 110.59596 * 80.81920 * 23 22 21 44 44 H 1.09002 * 110.02926 * 238.57116 * 24 20 19 45 45 H 1.09004 * 110.03159 * 359.94696 * 24 20 19 46 46 H 1.07996 * 119.92631 * 180.02562 * 25 19 18 47 47 H 1.08003 * 120.06725 * 179.97438 * 26 25 19 48 48 H 0.96702 * 113.99988 * 177.55977 * 29 27 11 49 49 H 1.09000 * 109.88602 * 59.48263 * 30 9 7 50 50 H 1.09003 * 109.87921 * 298.31995 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9333 -3.7312 -0.0016 11 6 0.8507 -4.6597 -0.6118 12 1 0.8564 -4.6016 -1.7003 13 7 1.0249 -6.0426 -0.1609 14 6 1.7537 -6.9048 -0.8971 15 8 2.2662 -6.5350 -1.9355 16 6 1.9290 -8.3005 -0.4423 17 6 1.3459 -8.7271 0.7519 18 6 1.5098 -10.0321 1.1684 19 6 2.2586 -10.9146 0.4103 20 6 2.4385 -12.3369 0.8745 21 6 1.0635 -13.0154 1.0441 22 6 1.2365 -13.9155 2.2936 23 6 2.1261 -13.0492 3.2195 24 6 3.1141 -12.3587 2.2569 25 6 2.8433 -10.4969 -0.7722 26 6 2.6832 -9.1959 -1.2024 27 6 -0.4486 -4.0441 -0.0288 28 1 -1.2988 -4.2508 -0.6789 29 8 -0.6927 -4.5348 1.2909 30 6 -0.1377 -2.5328 -0.0007 31 1 -0.4850 0.8400 0.0004 32 1 2.8328 -3.7400 -0.6172 33 1 2.1681 -4.0421 1.0164 34 1 0.6156 -6.3379 0.6675 35 1 0.7646 -8.0381 1.3466 36 1 1.0560 -10.3644 2.0903 37 1 3.0420 -12.8907 0.1552 38 1 0.2883 -12.2687 1.2165 39 1 0.8253 -13.6189 0.1683 40 1 1.7417 -14.8454 2.0322 41 1 0.2740 -14.1194 2.7628 42 1 2.6623 -13.6777 3.9306 43 1 1.5244 -12.3077 3.7452 44 1 4.0450 -12.9237 2.2087 45 1 3.3126 -11.3404 2.5915 46 1 3.4263 -11.1908 -1.3595 47 1 3.1405 -8.8710 -2.1253 48 1 -1.4732 -4.1523 1.7147 49 1 -0.5577 -2.0513 -0.8838 50 1 -0.5545 -2.0852 0.9016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083646841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:55 Heat of formation + Delta-G solvation = -45.668773 kcal Electronic energy + Delta-G solvation = -29639.767244 eV Core-core repulsion = 25631.677507 eV Total energy + Delta-G solvation = -4008.089737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.43290 -39.38215 -38.05294 -37.18517 -34.84063 -34.04624 -32.31259 -31.53359 -31.04084 -29.05982 -28.73032 -27.99178 -26.87028 -24.58842 -23.34930 -22.89713 -21.01679 -20.87032 -20.42715 -20.01777 -19.70716 -18.05583 -17.18115 -16.80993 -16.52637 -15.87951 -15.51094 -15.06247 -14.90590 -14.66665 -14.62637 -14.34670 -13.99318 -13.79362 -13.75615 -13.52228 -13.12040 -13.01643 -12.74330 -12.61254 -12.52485 -12.20600 -11.64797 -11.50199 -11.48317 -11.44026 -11.28982 -11.11747 -10.96160 -10.93578 -10.85915 -10.82985 -10.52025 -10.45943 -10.10293 -9.82757 -9.72930 -9.32373 -9.14481 -8.91348 -8.68707 -8.59195 -6.87629 -5.75253 -3.08089 0.74807 1.22011 2.90723 3.33224 3.39908 3.45759 3.48284 3.79019 4.16308 4.24543 4.32525 4.47849 4.55182 4.66414 4.74584 4.78050 4.92214 5.05850 5.11870 5.16012 5.17717 5.26359 5.29756 5.30190 5.37673 5.43290 5.52276 5.53832 5.54150 5.60771 5.70692 5.74291 5.81828 5.84227 5.87882 5.91894 5.95521 6.06846 6.17803 6.21944 6.27537 6.37431 6.60060 6.66637 6.72431 6.94519 7.32795 7.44011 7.72565 7.82057 8.06524 8.19360 8.45420 9.17730 9.77758 10.42246 11.37152 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023186 B = 0.001992 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.330212 B =14052.456379 C =14352.861445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.131 3.869 11 C 0.138 3.862 12 H 0.106 0.894 13 N -0.702 5.702 14 C 0.552 3.448 15 O -0.541 6.541 16 C -0.132 4.132 17 C -0.082 4.082 18 C -0.124 4.124 19 C -0.054 4.054 20 C -0.057 4.057 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.058 4.058 27 C 0.067 3.933 28 H 0.061 0.939 29 O -0.569 6.569 30 C 0.154 3.846 31 H 0.252 0.748 32 H 0.044 0.956 33 H 0.026 0.974 34 H 0.406 0.594 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.126 0.874 47 H 0.136 0.864 48 H 0.380 0.620 49 H 0.056 0.944 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 -28.113 4.513 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.032 3.968 12 H 0.124 0.876 13 N -0.353 5.353 14 C 0.339 3.661 15 O -0.420 6.420 16 C -0.135 4.135 17 C -0.101 4.101 18 C -0.141 4.141 19 C -0.054 4.054 20 C -0.075 4.075 21 C -0.155 4.155 22 C -0.164 4.164 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.146 4.146 26 C -0.077 4.077 27 C 0.008 3.992 28 H 0.079 0.921 29 O -0.375 6.375 30 C 0.029 3.971 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.243 0.757 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.144 0.856 47 H 0.153 0.847 48 H 0.228 0.772 49 H 0.074 0.926 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.450 -27.924 3.642 28.165 hybrid contribution -0.297 1.240 0.518 1.376 sum 0.152 -26.684 4.160 27.007 Atomic orbital electron populations 1.69919 1.04908 1.25012 1.57648 1.24800 0.95801 0.97737 1.02292 0.85987 0.78775 0.83496 0.77198 1.20442 1.21720 1.21765 1.19146 0.90598 0.82136 1.43209 0.90191 1.44287 1.01270 0.99900 1.87285 1.21867 0.94567 0.85735 0.97436 1.22399 0.95374 0.79411 0.99583 0.87612 1.45685 1.52357 1.10906 1.26345 1.18324 0.78761 0.85083 0.83956 1.90771 1.48497 1.78666 1.24061 1.20023 1.02300 0.94192 0.96955 1.21368 0.97649 0.96156 0.94917 1.20881 0.99983 0.92982 1.00304 1.20058 0.95794 0.95295 0.94252 1.20858 0.97261 0.91836 0.97545 1.22526 0.96246 0.98638 0.98123 1.22526 0.99803 0.98189 0.95835 1.22385 0.97566 0.98790 0.97587 1.22267 0.98369 1.01405 0.93585 1.21034 1.01114 0.95911 0.96577 1.21279 0.95067 0.92286 0.99053 1.23523 0.95598 0.96910 0.83216 0.92118 1.86224 1.51860 1.69376 1.30077 1.21871 0.85569 0.87693 1.01979 0.93773 0.93743 0.95648 0.75730 0.85372 0.85567 0.90144 0.90951 0.91466 0.91534 0.91491 0.91685 0.91509 0.91582 0.91169 0.85593 0.84652 0.77214 0.92598 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.92 10.31 55.49 0.57 -26.34 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 7 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.61 3.40 -169.93 -0.58 -16.19 16 10 C 0.13 2.94 6.93 -2.41 -0.02 2.92 16 11 C 0.14 2.63 3.32 -65.67 -0.22 2.41 16 12 H 0.11 2.15 7.54 -51.93 -0.39 1.76 16 13 N -0.70 -11.29 5.13 -52.56 -0.27 -11.56 16 14 C 0.55 9.16 7.77 -12.33 -0.10 9.07 16 15 O -0.54 -10.87 15.99 5.32 0.08 -10.79 16 16 C -0.13 -1.75 5.87 -104.97 -0.62 -2.37 16 17 C -0.08 -0.89 9.54 -39.18 -0.37 -1.27 16 18 C -0.12 -1.13 8.08 -39.64 -0.32 -1.45 16 19 C -0.05 -0.47 4.70 -104.53 -0.49 -0.96 16 20 C -0.06 -0.38 3.13 -90.65 -0.28 -0.67 16 21 C -0.12 -0.72 6.27 -25.03 -0.16 -0.88 16 22 C -0.13 -0.67 6.91 -24.70 -0.17 -0.84 16 23 C -0.13 -0.70 6.83 -25.07 -0.17 -0.87 16 24 C -0.12 -0.76 6.23 -25.61 -0.16 -0.92 16 25 C -0.13 -1.24 9.66 -39.64 -0.38 -1.62 16 26 C -0.06 -0.70 9.60 -39.19 -0.38 -1.08 16 27 C 0.07 1.23 4.19 -24.90 -0.10 1.12 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 O -0.57 -9.02 12.14 -35.23 -0.43 -9.45 16 30 C 0.15 3.63 5.14 -3.06 -0.02 3.62 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.41 5.75 5.62 -40.82 -0.23 5.52 16 35 H 0.13 1.23 6.41 -52.49 -0.34 0.90 16 36 H 0.13 0.93 7.77 -52.49 -0.41 0.52 16 37 H 0.08 0.50 7.90 -51.93 -0.41 0.09 16 38 H 0.07 0.48 6.90 -51.93 -0.36 0.12 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.51 7.28 -51.93 -0.38 0.13 16 46 H 0.13 0.94 7.95 -52.49 -0.42 0.52 16 47 H 0.14 1.67 7.65 -52.48 -0.40 1.27 16 48 H 0.38 4.68 9.12 45.56 0.42 5.09 16 49 H 0.06 1.45 7.38 -51.93 -0.38 1.06 16 50 H 0.05 1.36 7.43 -51.93 -0.39 0.97 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -33.01 396.13 -10.91 -43.92 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.03 Total: 7.78 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -4.20 Total: -0.65 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.27 Total: -54.10 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.34 Total: -20.24 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.01 -10.91 -43.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083646841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.747 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds