Wall clock time and date at job start Wed Apr 1 2020 02:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46794 * 300.00137 * 3 2 1 6 6 H 1.48496 * 109.46731 * 60.00263 * 3 2 1 7 7 C 1.38813 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.65152 * 179.97438 * 9 7 2 11 11 C 1.55121 * 104.94414 * 204.04319 * 10 9 7 12 12 H 1.09003 * 110.93564 * 81.21616 * 11 10 9 13 13 N 1.46500 * 111.16052 * 205.13204 * 11 10 9 14 14 C 1.34780 * 120.00075 * 267.17152 * 13 11 10 15 15 O 1.21556 * 119.99923 * 359.97438 * 14 13 11 16 16 C 1.47839 * 120.00154 * 180.02562 * 14 13 11 17 17 C 1.39578 * 120.14540 * 359.71976 * 16 14 13 18 18 C 1.37957 * 119.85365 * 179.79271 * 17 16 14 19 19 C 1.38356 * 120.14439 * 0.48985 * 18 17 16 20 20 C 1.50698 * 119.85618 * 179.72516 * 19 18 17 21 21 C 1.54269 * 110.03446 * 57.92276 * 20 19 18 22 22 C 1.54964 * 104.16084 * 217.14194 * 21 20 19 23 23 C 1.54893 * 102.77837 * 37.88723 * 22 21 20 24 24 C 1.53879 * 110.02982 * 300.71052 * 20 19 18 25 25 C 1.38365 * 120.29504 * 359.73942 * 19 18 17 26 26 C 1.37959 * 120.13959 * 0.02790 * 25 19 18 27 27 C 1.55153 * 101.48662 * 323.22344 * 11 10 9 28 28 H 1.09002 * 110.72030 * 153.73613 * 27 11 10 29 29 O 1.42895 * 110.71918 * 276.83166 * 27 11 10 30 30 C 1.47026 * 125.64787 * 0.03422 * 9 7 2 31 31 H 0.97002 * 120.00279 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.36380 * 323.01008 * 10 9 7 33 33 H 1.09004 * 110.36441 * 85.21640 * 10 9 7 34 34 H 0.96998 * 120.00277 * 87.17226 * 13 11 10 35 35 H 1.08001 * 120.06754 * 0.02562 * 17 16 14 36 36 H 1.07995 * 119.92632 * 180.23241 * 18 17 16 37 37 H 1.09003 * 110.02057 * 179.31813 * 20 19 18 38 38 H 1.09005 * 110.48354 * 335.78569 * 21 20 19 39 39 H 1.09000 * 110.48474 * 98.43150 * 21 20 19 40 40 H 1.09005 * 110.72225 * 279.57508 * 22 21 20 41 41 H 1.08998 * 110.92251 * 156.29821 * 22 21 20 42 42 H 1.09004 * 110.48366 * 203.40327 * 23 22 21 43 43 H 1.09003 * 110.59596 * 80.81920 * 23 22 21 44 44 H 1.09002 * 110.02926 * 238.57116 * 24 20 19 45 45 H 1.09004 * 110.03159 * 359.94696 * 24 20 19 46 46 H 1.07996 * 119.92631 * 180.02562 * 25 19 18 47 47 H 1.08003 * 120.06725 * 179.97438 * 26 25 19 48 48 H 0.96702 * 113.99988 * 177.55977 * 29 27 11 49 49 H 1.09000 * 109.88602 * 59.48263 * 30 9 7 50 50 H 1.09003 * 109.87921 * 298.31995 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.9333 -3.7312 -0.0016 11 6 0.8507 -4.6597 -0.6118 12 1 0.8564 -4.6016 -1.7003 13 7 1.0249 -6.0426 -0.1609 14 6 1.7537 -6.9048 -0.8971 15 8 2.2662 -6.5350 -1.9355 16 6 1.9290 -8.3005 -0.4423 17 6 1.3459 -8.7271 0.7519 18 6 1.5098 -10.0321 1.1684 19 6 2.2586 -10.9146 0.4103 20 6 2.4385 -12.3369 0.8745 21 6 1.0635 -13.0154 1.0441 22 6 1.2365 -13.9155 2.2936 23 6 2.1261 -13.0492 3.2195 24 6 3.1141 -12.3587 2.2569 25 6 2.8433 -10.4969 -0.7722 26 6 2.6832 -9.1959 -1.2024 27 6 -0.4486 -4.0441 -0.0288 28 1 -1.2988 -4.2508 -0.6789 29 8 -0.6927 -4.5348 1.2909 30 6 -0.1377 -2.5328 -0.0007 31 1 -0.4850 0.8400 0.0004 32 1 2.8328 -3.7400 -0.6172 33 1 2.1681 -4.0421 1.0164 34 1 0.6156 -6.3379 0.6675 35 1 0.7646 -8.0381 1.3466 36 1 1.0560 -10.3644 2.0903 37 1 3.0420 -12.8907 0.1552 38 1 0.2883 -12.2687 1.2165 39 1 0.8253 -13.6189 0.1683 40 1 1.7417 -14.8454 2.0322 41 1 0.2740 -14.1194 2.7628 42 1 2.6623 -13.6777 3.9306 43 1 1.5244 -12.3077 3.7452 44 1 4.0450 -12.9237 2.2087 45 1 3.3126 -11.3404 2.5915 46 1 3.4263 -11.1908 -1.3595 47 1 3.1405 -8.8710 -2.1253 48 1 -1.4732 -4.1523 1.7147 49 1 -0.5577 -2.0513 -0.8838 50 1 -0.5545 -2.0852 0.9016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083646841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:54 Heat of formation + Delta-G solvation = -66.953222 kcal Electronic energy + Delta-G solvation = -29640.690207 eV Core-core repulsion = 25631.677507 eV Total energy + Delta-G solvation = -4009.012700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.48261 -40.44767 -39.42576 -38.01403 -36.47923 -35.55718 -33.77668 -32.78689 -31.91427 -30.35162 -29.50132 -29.17880 -28.29911 -26.44804 -24.39274 -23.70686 -22.43098 -21.93781 -21.44413 -21.40150 -20.42154 -19.45027 -18.74060 -18.34548 -17.34152 -16.94616 -16.71360 -16.40070 -16.05831 -16.02708 -15.76800 -15.65109 -15.23134 -14.78009 -14.72824 -14.52057 -14.43192 -14.27045 -14.17215 -13.92367 -13.66368 -13.32882 -13.21019 -12.83954 -12.78706 -12.32901 -12.26658 -12.16312 -12.10286 -11.97171 -11.92279 -11.90127 -11.86525 -11.73293 -11.40271 -11.34206 -11.07739 -10.88833 -10.79568 -10.19558 -9.94765 -9.64145 -8.97246 -7.90763 -5.26758 -0.16847 0.41774 1.44278 1.45347 1.55916 1.79236 2.01492 2.47171 2.84269 3.15632 3.28247 3.51540 3.61672 3.71165 3.75523 3.86450 3.87252 3.91596 3.95337 4.02930 4.22698 4.27142 4.41676 4.43159 4.49415 4.62589 4.62999 4.69015 4.72262 4.78636 4.82832 4.85475 4.88840 4.97978 5.02512 5.09866 5.15017 5.27276 5.31710 5.33837 5.36900 5.39185 5.42603 5.46438 5.47375 5.54565 5.62820 5.66715 5.93481 6.12250 6.53242 6.84958 7.04599 7.17156 7.68098 8.31978 9.19408 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023186 B = 0.001992 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.330212 B =14052.456379 C =14352.861445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.621 5.621 10 C 0.132 3.868 11 C 0.150 3.850 12 H 0.092 0.908 13 N -0.690 5.690 14 C 0.551 3.449 15 O -0.585 6.585 16 C -0.156 4.156 17 C -0.080 4.080 18 C -0.121 4.121 19 C -0.043 4.043 20 C -0.056 4.056 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.127 4.127 26 C -0.071 4.071 27 C 0.093 3.907 28 H 0.091 0.909 29 O -0.564 6.564 30 C 0.160 3.840 31 H 0.250 0.750 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.418 0.582 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.149 0.851 47 H 0.123 0.877 48 H 0.399 0.601 49 H 0.025 0.975 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -30.641 5.858 31.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.348 5.348 10 C 0.005 3.995 11 C 0.043 3.957 12 H 0.110 0.890 13 N -0.342 5.342 14 C 0.340 3.660 15 O -0.466 6.466 16 C -0.159 4.159 17 C -0.099 4.099 18 C -0.138 4.138 19 C -0.044 4.044 20 C -0.074 4.074 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.145 4.145 26 C -0.090 4.090 27 C 0.032 3.968 28 H 0.109 0.891 29 O -0.373 6.373 30 C 0.035 3.965 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.257 0.743 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.167 0.833 47 H 0.141 0.859 48 H 0.250 0.750 49 H 0.044 0.956 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.131 -30.492 5.027 30.904 hybrid contribution -0.174 1.920 0.153 1.934 sum -0.043 -28.572 5.180 29.038 Atomic orbital electron populations 1.70110 1.06024 1.25501 1.57996 1.25628 0.96810 1.00840 1.02183 0.84973 0.77980 0.79187 0.76943 1.19492 1.21615 1.21421 1.19446 0.90903 0.83599 1.43548 0.90572 1.44560 1.02547 1.00512 1.87182 1.21901 0.95048 0.85288 0.97231 1.21997 0.94556 0.80518 0.98630 0.89019 1.45503 1.52444 1.09478 1.26788 1.18892 0.77572 0.86333 0.83177 1.90743 1.50221 1.79681 1.25987 1.19822 1.04916 0.92354 0.98775 1.21495 0.97246 0.97178 0.93949 1.21141 0.99542 0.92190 1.00950 1.20378 0.94218 0.96357 0.93423 1.20926 0.98034 0.90425 0.98017 1.22529 0.95512 0.98699 0.98788 1.22519 1.00099 0.98148 0.95290 1.22397 0.97460 0.98889 0.97581 1.22264 0.98874 1.01076 0.93390 1.21267 1.01063 0.95103 0.97085 1.21320 0.95419 0.93370 0.98873 1.23134 0.95974 0.92721 0.84934 0.89144 1.86186 1.53274 1.68881 1.28953 1.21732 0.84096 0.91324 0.99361 0.94064 0.95440 0.95642 0.74315 0.84211 0.83347 0.89170 0.91355 0.91036 0.91002 0.90971 0.91101 0.91506 0.90984 0.92110 0.83349 0.85879 0.74975 0.95644 0.95254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.24 10.31 21.65 0.22 -56.02 16 2 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 3 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.25 -14.35 10.28 84.03 0.86 -13.48 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -33.24 3.40 -691.54 -2.35 -35.59 16 10 C 0.13 6.08 6.93 86.93 0.60 6.68 16 11 C 0.15 5.75 3.32 46.46 0.15 5.90 16 12 H 0.09 3.83 7.54 -2.39 -0.02 3.81 16 13 N -0.69 -21.93 5.13 -438.48 -2.25 -24.18 16 14 C 0.55 18.52 7.77 86.78 0.67 19.19 16 15 O -0.58 -24.39 15.99 -3.89 -0.06 -24.45 16 16 C -0.16 -4.07 5.87 -20.09 -0.12 -4.19 16 17 C -0.08 -1.60 9.54 22.53 0.21 -1.38 16 18 C -0.12 -1.90 8.08 22.23 0.18 -1.72 16 19 C -0.04 -0.66 4.70 -19.81 -0.09 -0.75 16 20 C -0.06 -0.59 3.13 -10.81 -0.03 -0.62 16 21 C -0.12 -1.10 6.27 31.70 0.20 -0.90 16 22 C -0.12 -0.94 6.91 31.91 0.22 -0.72 16 23 C -0.13 -1.05 6.83 31.67 0.22 -0.83 16 24 C -0.12 -1.18 6.23 31.32 0.20 -0.99 16 25 C -0.13 -2.23 9.66 22.23 0.21 -2.02 16 26 C -0.07 -1.69 9.60 22.53 0.22 -1.48 16 27 C 0.09 3.29 4.19 31.78 0.13 3.43 16 28 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 29 O -0.56 -16.75 12.14 -148.98 -1.81 -18.56 16 30 C 0.16 7.71 5.14 86.73 0.45 8.16 16 31 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.42 11.19 5.62 -92.71 -0.52 10.67 16 35 H 0.14 2.37 6.41 -2.91 -0.02 2.35 16 36 H 0.15 1.69 7.77 -2.91 -0.02 1.66 16 37 H 0.09 0.82 7.90 -2.39 -0.02 0.80 16 38 H 0.07 0.70 6.90 -2.38 -0.02 0.69 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 0.73 7.28 -2.38 -0.02 0.72 16 46 H 0.15 1.87 7.95 -2.91 -0.02 1.84 16 47 H 0.12 3.17 7.65 -2.91 -0.02 3.15 16 48 H 0.40 8.86 9.12 -74.06 -0.68 8.19 16 49 H 0.03 1.36 7.38 -2.39 -0.02 1.35 16 50 H 0.03 1.53 7.43 -2.39 -0.02 1.52 16 Total: -1.00 -73.49 396.13 0.30 -73.19 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.24 Total: 25.84 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 4.75 Total: 11.22 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -4.37 Total: -115.78 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.87 Total: -43.01 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.49 0.30 -73.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083646841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.237 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds