Wall clock time and date at job start Wed Apr 1 2020 03:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99999 * 2 1 4 4 H 1.48497 * 109.47481 * 264.54314 * 3 2 1 5 5 H 1.48505 * 109.46912 * 24.54296 * 3 2 1 6 6 H 1.48499 * 109.47149 * 144.53906 * 3 2 1 7 7 C 1.38807 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00062 * 337.64223 * 7 2 1 9 9 N 1.36944 * 120.00218 * 157.63569 * 7 2 1 10 10 C 1.47017 * 125.64719 * 161.51596 * 9 7 2 11 11 C 1.54327 * 107.26936 * 178.89757 * 10 9 7 12 12 H 1.09001 * 110.72097 * 96.17281 * 11 10 9 13 13 N 1.46502 * 110.87351 * 219.37217 * 11 10 9 14 14 C 1.34774 * 120.00134 * 268.60992 * 13 11 10 15 15 O 1.21278 * 119.99819 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99915 * 179.97438 * 14 13 11 17 17 C 1.53000 * 109.46937 * 180.02562 * 16 14 13 18 18 H 1.08992 * 115.55110 * 29.27786 * 17 16 14 19 19 C 1.53002 * 117.49925 * 243.61072 * 17 16 14 20 20 C 1.53001 * 117.49661 * 174.98926 * 17 16 14 21 21 H 1.08994 * 117.50246 * 0.02562 * 20 17 16 22 22 C 1.53001 * 117.49673 * 214.97767 * 20 17 16 23 23 C 1.50703 * 109.47131 * 175.00227 * 22 20 17 24 24 C 1.38238 * 119.99849 * 269.72623 * 23 22 20 25 25 C 1.38234 * 119.99941 * 179.76002 * 24 23 22 26 26 C 1.38239 * 119.99861 * 0.51658 * 25 24 23 27 27 C 1.38233 * 119.99936 * 359.73957 * 26 25 24 28 28 C 1.38229 * 120.00262 * 0.02562 * 27 26 25 29 29 C 1.55160 * 102.94385 * 337.80842 * 11 10 9 30 30 H 1.08996 * 111.00169 * 153.57249 * 29 11 10 31 31 O 1.42891 * 111.00421 * 277.39071 * 29 11 10 32 32 C 1.47419 * 125.64725 * 341.46645 * 9 7 2 33 33 H 0.96998 * 119.99976 * 359.97438 * 1 2 3 34 34 H 1.08996 * 109.88268 * 59.48441 * 10 9 7 35 35 H 1.09002 * 110.01610 * 298.38867 * 10 9 7 36 36 H 0.96997 * 119.99376 * 88.60956 * 13 11 10 37 37 H 1.08994 * 109.47641 * 300.00010 * 16 14 13 38 38 H 1.09003 * 109.46774 * 60.00819 * 16 14 13 39 39 H 1.09004 * 117.50122 * 359.97438 * 19 17 16 40 40 H 1.09002 * 117.50219 * 145.02334 * 19 17 16 41 41 H 1.08997 * 109.47575 * 294.99765 * 22 20 17 42 42 H 1.08999 * 109.47237 * 54.99955 * 22 20 17 43 43 H 1.08002 * 120.00072 * 0.02562 * 24 23 22 44 44 H 1.07999 * 120.00028 * 180.22524 * 25 24 23 45 45 H 1.07997 * 119.99784 * 179.72349 * 26 25 24 46 46 H 1.07999 * 119.99504 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.00428 * 179.97438 * 28 27 26 48 48 H 0.96700 * 114.00282 * 176.81900 * 31 29 11 49 49 H 1.09001 * 110.36613 * 85.32891 * 32 9 7 50 50 H 1.09002 * 110.36722 * 323.01223 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6131 1.9799 -1.3937 5 1 1.3947 2.6832 0.5816 6 1 3.4853 1.4762 0.8122 7 6 2.0103 -1.2021 -0.0005 8 1 1.5312 -2.1025 0.3549 9 7 3.3025 -1.2465 -0.4518 10 6 4.2727 -2.3143 -0.1688 11 6 5.5800 -1.9523 -0.9046 12 1 6.2732 -1.4461 -0.2329 13 7 6.2009 -3.1463 -1.4835 14 6 7.1087 -3.8452 -0.7737 15 8 7.4112 -3.4860 0.3445 16 6 7.7469 -5.0737 -1.3690 17 6 8.7316 -5.6747 -0.3640 18 1 8.4917 -5.5085 0.6861 19 6 10.2106 -5.7035 -0.7547 20 6 9.3991 -7.0004 -0.7353 21 1 9.1371 -7.4442 -1.6958 22 6 9.6788 -7.9918 0.3960 23 6 10.2207 -9.2737 -0.1820 24 6 9.3555 -10.2906 -0.5402 25 6 9.8522 -11.4645 -1.0750 26 6 11.2150 -11.6258 -1.2416 27 6 12.0806 -10.6111 -0.8784 28 6 11.5836 -9.4353 -0.3481 29 6 5.0954 -0.9896 -2.0208 30 1 5.8900 -0.3055 -2.3187 31 8 4.6014 -1.7179 -3.1465 32 6 3.9507 -0.2321 -1.3027 33 1 -0.4850 0.8400 0.0004 34 1 3.8924 -3.2675 -0.5359 35 1 4.4562 -2.3769 0.9039 36 1 5.9586 -3.4337 -2.3777 37 1 6.9752 -5.8067 -1.6037 38 1 8.2787 -4.8013 -2.2807 39 1 10.4821 -5.2946 -1.7280 40 1 10.9437 -5.5566 0.0384 41 1 10.4107 -7.5643 1.0812 42 1 8.7541 -8.1985 0.9348 43 1 8.2910 -10.1661 -0.4063 44 1 9.1760 -12.2575 -1.3583 45 1 11.6034 -12.5447 -1.6552 46 1 13.1453 -10.7373 -1.0081 47 1 12.2599 -8.6426 -0.0640 48 1 4.2425 -1.1594 -3.8496 49 1 4.3548 0.5743 -0.6907 50 1 3.2415 0.1619 -2.0306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083662367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:52 Heat of formation + Delta-G solvation = -12.286072 kcal Electronic energy + Delta-G solvation = -28835.752443 eV Core-core repulsion = 24829.110288 eV Total energy + Delta-G solvation = -4006.642155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.04257 -39.61437 -38.44750 -37.48308 -35.02445 -34.04488 -32.97018 -31.93998 -31.19591 -30.12061 -28.66576 -27.66096 -26.87004 -24.25890 -22.89847 -22.27211 -21.64329 -21.17647 -20.60764 -20.12640 -19.86357 -17.65711 -17.16988 -16.89359 -16.73400 -15.85729 -15.58063 -15.45675 -15.41331 -15.29649 -14.70431 -14.45927 -14.14647 -13.80371 -13.73648 -13.37407 -13.30942 -13.14486 -13.01494 -12.85488 -12.69812 -12.43114 -12.38773 -11.68419 -11.56056 -11.43856 -11.42582 -11.37684 -11.30914 -11.14064 -11.01440 -10.51687 -10.27032 -10.21007 -10.07524 -9.72054 -9.59202 -9.46436 -9.23549 -8.97884 -8.86886 -8.63506 -7.06394 -5.96219 -3.26338 1.03960 1.08782 2.76790 3.19256 3.27526 3.45128 3.46438 3.47492 3.58968 4.26690 4.36449 4.51141 4.51861 4.54586 4.67027 4.67660 4.74596 4.81883 4.90051 4.98805 5.01866 5.10563 5.20828 5.22354 5.23162 5.27198 5.37371 5.41121 5.47572 5.48453 5.52277 5.58018 5.62996 5.73791 5.76240 5.79043 5.94369 5.98528 6.15288 6.19005 6.20221 6.31178 6.34476 6.37979 6.44254 6.65719 6.69819 6.84114 7.64441 7.72988 7.84893 8.29239 8.40013 8.81027 9.66043 10.13051 11.19920 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.001698 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.906489 B =16482.765338 C =16782.438723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 0.882 3.118 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.238 4.238 8 H 0.093 0.907 9 N -0.600 5.600 10 C 0.131 3.869 11 C 0.141 3.859 12 H 0.105 0.895 13 N -0.710 5.710 14 C 0.512 3.488 15 O -0.543 6.543 16 C -0.110 4.110 17 C -0.131 4.131 18 H 0.120 0.880 19 C -0.172 4.172 20 C -0.144 4.144 21 H 0.105 0.895 22 C -0.053 4.053 23 C -0.074 4.074 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.115 4.115 29 C 0.083 3.917 30 H 0.066 0.934 31 O -0.555 6.555 32 C 0.083 3.917 33 H 0.263 0.737 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.408 0.592 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.381 0.619 49 H 0.034 0.966 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.148 -17.805 -6.914 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.712 3.288 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.202 1.202 7 C -0.365 4.365 8 H 0.110 0.890 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.036 3.964 12 H 0.123 0.877 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.420 6.420 16 C -0.150 4.150 17 C -0.149 4.149 18 H 0.138 0.862 19 C -0.209 4.209 20 C -0.162 4.162 21 H 0.123 0.877 22 C -0.090 4.090 23 C -0.074 4.074 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.133 4.133 29 C 0.023 3.977 30 H 0.084 0.916 31 O -0.361 6.361 32 C -0.043 4.043 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.244 0.756 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.229 0.771 49 H 0.052 0.948 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 24.304 -17.966 -5.696 30.756 hybrid contribution 0.051 1.428 -0.764 1.620 sum 24.355 -16.539 -6.460 30.140 Atomic orbital electron populations 1.69844 1.05484 1.26539 1.53273 1.24995 0.95186 0.97295 1.00300 0.87001 0.79358 0.84877 0.77554 1.21454 1.22864 1.20184 1.18651 0.84139 0.95516 1.38170 0.88968 1.44573 1.09874 1.21848 1.56424 1.21667 0.87596 0.93069 0.97251 1.22111 0.95021 0.85268 0.94048 0.87749 1.45809 1.42148 1.28305 1.19946 1.20574 0.78978 0.84719 0.85867 1.90690 1.62679 1.69326 1.19289 1.21206 0.99201 0.95691 0.98887 1.22181 0.93106 0.98793 1.00817 0.86173 1.23215 0.94340 1.00559 1.02794 1.22376 1.05004 0.88831 0.99962 0.87718 1.20217 1.01380 0.91339 0.96060 1.19881 0.93482 0.95472 0.98607 1.21120 0.99756 0.93407 0.99245 1.21165 0.95508 0.97668 0.99387 1.21147 0.93664 0.99089 1.00720 1.21148 0.99667 0.93848 0.99173 1.21071 0.94905 0.97586 0.99768 1.23220 0.95194 0.92903 0.86407 0.91614 1.86286 1.82562 1.37655 1.29595 1.22661 0.94244 0.93009 0.94369 0.92703 0.94294 0.94500 0.75597 0.88416 0.88957 0.88938 0.88757 0.90712 0.90314 0.85951 0.86151 0.86317 0.86241 0.86147 0.77116 0.94824 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16 2 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 3 Si 0.88 22.32 24.27 -169.99 -4.13 18.20 16 4 H -0.29 -6.84 6.49 56.52 0.37 -6.47 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.28 -6.94 6.66 56.52 0.38 -6.56 16 7 C -0.24 -6.82 10.57 -15.06 -0.16 -6.98 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.40 16 9 N -0.60 -14.63 3.21 -170.08 -0.55 -15.18 16 10 C 0.13 2.75 7.00 -3.07 -0.02 2.73 16 11 C 0.14 2.40 3.20 -66.09 -0.21 2.19 16 12 H 0.10 1.83 7.55 -51.93 -0.39 1.44 16 13 N -0.71 -9.93 5.08 -52.03 -0.26 -10.20 16 14 C 0.51 7.13 7.83 -10.99 -0.09 7.04 16 15 O -0.54 -9.63 15.21 5.56 0.08 -9.54 16 16 C -0.11 -1.06 5.98 -27.88 -0.17 -1.23 16 17 C -0.13 -1.28 5.14 -90.62 -0.47 -1.75 16 18 H 0.12 1.44 7.30 -51.93 -0.38 1.06 16 19 C -0.17 -1.44 9.82 -26.73 -0.26 -1.70 16 20 C -0.14 -1.15 5.44 -90.62 -0.49 -1.64 16 21 H 0.10 0.82 8.07 -51.93 -0.42 0.41 16 22 C -0.05 -0.41 5.63 -27.88 -0.16 -0.56 16 23 C -0.07 -0.60 5.09 -104.62 -0.53 -1.13 16 24 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 25 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 26 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 27 C -0.12 -0.86 10.05 -39.59 -0.40 -1.26 16 28 C -0.12 -0.88 9.70 -39.58 -0.38 -1.27 16 29 C 0.08 1.34 4.28 -24.58 -0.11 1.23 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 O -0.56 -8.11 12.24 -35.23 -0.43 -8.54 16 32 C 0.08 1.74 4.43 -2.53 -0.01 1.73 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.41 5.01 7.60 -40.82 -0.31 4.70 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.72 7.88 -51.93 -0.41 0.31 16 39 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 40 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 41 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16 42 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.38 4.21 9.12 45.56 0.42 4.63 16 49 H 0.03 0.73 5.58 -51.93 -0.29 0.44 16 50 H 0.07 1.45 6.63 -51.93 -0.34 1.11 16 LS Contribution 404.40 15.07 6.09 6.09 Total: -1.00 -34.52 404.40 -10.35 -44.86 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.21 Total: 7.47 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -4.73 Total: -5.96 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.03 Total: -52.59 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.35 Total: -18.08 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.13 Total: 18.20 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.52 -10.35 -44.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083662367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.577 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds