Wall clock time and date at job start Wed Apr 1 2020 03:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99999 * 2 1 4 4 H 1.48497 * 109.47481 * 264.54314 * 3 2 1 5 5 H 1.48505 * 109.46912 * 24.54296 * 3 2 1 6 6 H 1.48499 * 109.47149 * 144.53906 * 3 2 1 7 7 C 1.38807 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00062 * 337.64223 * 7 2 1 9 9 N 1.36944 * 120.00218 * 157.63569 * 7 2 1 10 10 C 1.47017 * 125.64719 * 161.51596 * 9 7 2 11 11 C 1.54327 * 107.26936 * 178.89757 * 10 9 7 12 12 H 1.09001 * 110.72097 * 96.17281 * 11 10 9 13 13 N 1.46502 * 110.87351 * 219.37217 * 11 10 9 14 14 C 1.34774 * 120.00134 * 268.60992 * 13 11 10 15 15 O 1.21278 * 119.99819 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99915 * 179.97438 * 14 13 11 17 17 C 1.53000 * 109.46937 * 180.02562 * 16 14 13 18 18 H 1.08992 * 115.55110 * 29.27786 * 17 16 14 19 19 C 1.53002 * 117.49925 * 243.61072 * 17 16 14 20 20 C 1.53001 * 117.49661 * 174.98926 * 17 16 14 21 21 H 1.08994 * 117.50246 * 0.02562 * 20 17 16 22 22 C 1.53001 * 117.49673 * 214.97767 * 20 17 16 23 23 C 1.50703 * 109.47131 * 175.00227 * 22 20 17 24 24 C 1.38238 * 119.99849 * 269.72623 * 23 22 20 25 25 C 1.38234 * 119.99941 * 179.76002 * 24 23 22 26 26 C 1.38239 * 119.99861 * 0.51658 * 25 24 23 27 27 C 1.38233 * 119.99936 * 359.73957 * 26 25 24 28 28 C 1.38229 * 120.00262 * 0.02562 * 27 26 25 29 29 C 1.55160 * 102.94385 * 337.80842 * 11 10 9 30 30 H 1.08996 * 111.00169 * 153.57249 * 29 11 10 31 31 O 1.42891 * 111.00421 * 277.39071 * 29 11 10 32 32 C 1.47419 * 125.64725 * 341.46645 * 9 7 2 33 33 H 0.96998 * 119.99976 * 359.97438 * 1 2 3 34 34 H 1.08996 * 109.88268 * 59.48441 * 10 9 7 35 35 H 1.09002 * 110.01610 * 298.38867 * 10 9 7 36 36 H 0.96997 * 119.99376 * 88.60956 * 13 11 10 37 37 H 1.08994 * 109.47641 * 300.00010 * 16 14 13 38 38 H 1.09003 * 109.46774 * 60.00819 * 16 14 13 39 39 H 1.09004 * 117.50122 * 359.97438 * 19 17 16 40 40 H 1.09002 * 117.50219 * 145.02334 * 19 17 16 41 41 H 1.08997 * 109.47575 * 294.99765 * 22 20 17 42 42 H 1.08999 * 109.47237 * 54.99955 * 22 20 17 43 43 H 1.08002 * 120.00072 * 0.02562 * 24 23 22 44 44 H 1.07999 * 120.00028 * 180.22524 * 25 24 23 45 45 H 1.07997 * 119.99784 * 179.72349 * 26 25 24 46 46 H 1.07999 * 119.99504 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.00428 * 179.97438 * 28 27 26 48 48 H 0.96700 * 114.00282 * 176.81900 * 31 29 11 49 49 H 1.09001 * 110.36613 * 85.32891 * 32 9 7 50 50 H 1.09002 * 110.36722 * 323.01223 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6131 1.9799 -1.3937 5 1 1.3947 2.6832 0.5816 6 1 3.4853 1.4762 0.8122 7 6 2.0103 -1.2021 -0.0005 8 1 1.5312 -2.1025 0.3549 9 7 3.3025 -1.2465 -0.4518 10 6 4.2727 -2.3143 -0.1688 11 6 5.5800 -1.9523 -0.9046 12 1 6.2732 -1.4461 -0.2329 13 7 6.2009 -3.1463 -1.4835 14 6 7.1087 -3.8452 -0.7737 15 8 7.4112 -3.4860 0.3445 16 6 7.7469 -5.0737 -1.3690 17 6 8.7316 -5.6747 -0.3640 18 1 8.4917 -5.5085 0.6861 19 6 10.2106 -5.7035 -0.7547 20 6 9.3991 -7.0004 -0.7353 21 1 9.1371 -7.4442 -1.6958 22 6 9.6788 -7.9918 0.3960 23 6 10.2207 -9.2737 -0.1820 24 6 9.3555 -10.2906 -0.5402 25 6 9.8522 -11.4645 -1.0750 26 6 11.2150 -11.6258 -1.2416 27 6 12.0806 -10.6111 -0.8784 28 6 11.5836 -9.4353 -0.3481 29 6 5.0954 -0.9896 -2.0208 30 1 5.8900 -0.3055 -2.3187 31 8 4.6014 -1.7179 -3.1465 32 6 3.9507 -0.2321 -1.3027 33 1 -0.4850 0.8400 0.0004 34 1 3.8924 -3.2675 -0.5359 35 1 4.4562 -2.3769 0.9039 36 1 5.9586 -3.4337 -2.3777 37 1 6.9752 -5.8067 -1.6037 38 1 8.2787 -4.8013 -2.2807 39 1 10.4821 -5.2946 -1.7280 40 1 10.9437 -5.5566 0.0384 41 1 10.4107 -7.5643 1.0812 42 1 8.7541 -8.1985 0.9348 43 1 8.2910 -10.1661 -0.4063 44 1 9.1760 -12.2575 -1.3583 45 1 11.6034 -12.5447 -1.6552 46 1 13.1453 -10.7373 -1.0081 47 1 12.2599 -8.6426 -0.0640 48 1 4.2425 -1.1594 -3.8496 49 1 4.3548 0.5743 -0.6907 50 1 3.2415 0.1619 -2.0306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083662367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:51 Heat of formation + Delta-G solvation = -36.140931 kcal Electronic energy + Delta-G solvation = -28836.786867 eV Core-core repulsion = 24829.110288 eV Total energy + Delta-G solvation = -4007.676579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.16723 -40.28303 -39.66769 -38.32551 -36.50390 -35.42482 -33.96469 -33.54389 -31.71526 -31.30767 -30.06665 -29.10761 -27.59163 -26.07570 -23.43654 -22.94355 -22.83527 -22.56229 -21.49055 -21.20259 -20.94440 -19.31923 -18.30874 -18.03680 -17.60043 -17.40361 -16.88707 -16.50324 -16.12117 -15.98150 -15.81448 -15.67229 -15.48520 -15.11628 -14.71568 -14.58734 -14.43197 -14.23794 -14.08356 -13.94355 -13.69375 -13.36917 -13.29836 -13.19365 -13.08481 -12.75253 -12.68940 -12.30439 -12.26047 -12.14132 -12.11116 -11.97072 -11.83125 -11.59041 -11.12473 -10.99334 -10.85848 -10.73532 -10.57631 -10.06632 -9.77227 -9.53270 -9.09918 -8.20682 -5.48717 0.49667 0.55057 1.25770 1.39266 1.47569 1.67311 2.10763 2.38099 2.85564 2.94332 2.98500 3.12957 3.30619 3.62790 3.66559 3.77091 3.80255 3.90920 3.99874 4.10468 4.12618 4.20303 4.25829 4.28056 4.34711 4.51656 4.55386 4.57623 4.62383 4.67575 4.70334 4.70797 4.77511 4.81152 4.92845 4.95307 4.96265 4.97941 5.01796 5.20753 5.23699 5.34235 5.42826 5.49816 5.61922 5.63758 5.68028 5.78984 6.05639 6.18208 6.63417 6.69430 6.86209 7.31963 7.48064 8.02495 8.99145 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.001698 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.906489 B =16482.765338 C =16782.438723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.036 4.036 3 Si 0.951 3.049 4 H -0.256 1.256 5 H -0.307 1.307 6 H -0.273 1.273 7 C -0.240 4.240 8 H 0.051 0.949 9 N -0.617 5.617 10 C 0.129 3.871 11 C 0.150 3.850 12 H 0.102 0.898 13 N -0.700 5.700 14 C 0.510 3.490 15 O -0.585 6.585 16 C -0.099 4.099 17 C -0.148 4.148 18 H 0.092 0.908 19 C -0.167 4.167 20 C -0.127 4.127 21 H 0.112 0.888 22 C -0.052 4.052 23 C -0.085 4.085 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.136 4.136 27 C -0.128 4.128 28 C -0.127 4.127 29 C 0.106 3.894 30 H 0.111 0.889 31 O -0.559 6.559 32 C 0.071 3.929 33 H 0.264 0.736 34 H 0.029 0.971 35 H 0.015 0.985 36 H 0.420 0.580 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.127 0.873 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.129 0.871 48 H 0.400 0.600 49 H 0.036 0.964 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.154 -17.742 -9.396 33.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.235 1.235 6 H -0.199 1.199 7 C -0.369 4.369 8 H 0.069 0.931 9 N -0.344 5.344 10 C 0.003 3.997 11 C 0.043 3.957 12 H 0.120 0.880 13 N -0.353 5.353 14 C 0.298 3.702 15 O -0.465 6.465 16 C -0.138 4.138 17 C -0.167 4.167 18 H 0.110 0.890 19 C -0.204 4.204 20 C -0.145 4.145 21 H 0.130 0.870 22 C -0.089 4.089 23 C -0.085 4.085 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.154 4.154 27 C -0.146 4.146 28 C -0.145 4.145 29 C 0.046 3.954 30 H 0.129 0.871 31 O -0.368 6.368 32 C -0.054 4.054 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.258 0.742 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.145 0.855 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.147 0.853 48 H 0.251 0.749 49 H 0.053 0.947 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.345 -17.922 -8.240 33.717 hybrid contribution -0.915 1.252 0.050 1.551 sum 26.431 -16.670 -8.189 32.304 Atomic orbital electron populations 1.69978 1.07283 1.27446 1.55416 1.25669 0.95881 1.00888 1.00594 0.85894 0.77605 0.79595 0.79092 1.18127 1.23531 1.19874 1.18529 0.86167 0.94354 1.37839 0.93135 1.44616 1.09067 1.23482 1.57241 1.21724 0.89337 0.91949 0.96718 1.21812 0.92764 0.86701 0.94377 0.87991 1.45706 1.41781 1.27484 1.20315 1.21356 0.78297 0.85295 0.85210 1.90680 1.63996 1.70525 1.21273 1.21229 0.99512 0.93691 0.99397 1.22065 0.94349 1.00741 0.99520 0.88979 1.23304 0.93283 1.00431 1.03382 1.22342 1.03809 0.88292 1.00084 0.86983 1.20192 1.01210 0.91439 0.96043 1.19945 0.93855 0.95571 0.99101 1.21295 1.00150 0.93803 0.99681 1.21427 0.96137 0.97894 0.99200 1.21451 0.93643 0.99839 1.00438 1.21433 1.00755 0.93632 0.98745 1.21271 0.94955 0.98250 0.99984 1.23047 0.94036 0.92304 0.86038 0.87118 1.86257 1.82680 1.38270 1.29576 1.22904 0.95611 0.92838 0.94054 0.92710 0.95331 0.96685 0.74220 0.86782 0.86054 0.87575 0.88786 0.90673 0.90767 0.85509 0.84713 0.84501 0.84501 0.85295 0.74923 0.94699 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.68 13.97 21.65 0.30 -60.38 16 2 C -0.04 -2.12 5.43 84.86 0.46 -1.66 16 3 Si 0.95 46.19 24.27 68.60 1.66 47.86 16 4 H -0.26 -11.09 6.49 99.48 0.65 -10.45 16 5 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.27 -13.02 6.66 99.48 0.66 -12.36 16 7 C -0.24 -14.29 10.57 84.03 0.89 -13.40 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 9 N -0.62 -30.27 3.21 -692.00 -2.22 -32.49 16 10 C 0.13 5.51 7.00 86.73 0.61 6.11 16 11 C 0.15 4.85 3.20 46.18 0.15 5.00 16 12 H 0.10 3.41 7.55 -2.39 -0.02 3.40 16 13 N -0.70 -18.05 5.08 -436.91 -2.22 -20.28 16 14 C 0.51 13.44 7.83 87.66 0.69 14.13 16 15 O -0.58 -20.68 15.21 -3.02 -0.05 -20.73 16 16 C -0.10 -1.67 5.98 29.85 0.18 -1.50 16 17 C -0.15 -2.74 5.14 -10.79 -0.06 -2.79 16 18 H 0.09 2.26 7.30 -2.39 -0.02 2.24 16 19 C -0.17 -2.47 9.82 30.60 0.30 -2.17 16 20 C -0.13 -1.84 5.44 -10.79 -0.06 -1.89 16 21 H 0.11 1.49 8.07 -2.39 -0.02 1.47 16 22 C -0.05 -0.76 5.63 29.85 0.17 -0.59 16 23 C -0.08 -1.28 5.09 -19.86 -0.10 -1.38 16 24 C -0.13 -1.95 9.70 22.27 0.22 -1.73 16 25 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 26 C -0.14 -1.68 10.05 22.27 0.22 -1.45 16 27 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 28 C -0.13 -1.78 9.70 22.27 0.22 -1.57 16 29 C 0.11 3.03 4.28 31.99 0.14 3.17 16 30 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 31 O -0.56 -14.29 12.24 -148.98 -1.82 -16.12 16 32 C 0.07 2.81 4.43 86.86 0.38 3.20 16 33 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 34 H 0.03 1.26 8.03 -2.39 -0.02 1.24 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.42 8.97 7.60 -92.71 -0.70 8.26 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.12 1.40 7.88 -2.39 -0.02 1.38 16 39 H 0.11 1.29 8.03 -2.39 -0.02 1.27 16 40 H 0.09 1.39 8.03 -2.39 -0.02 1.37 16 41 H 0.07 1.08 7.82 -2.39 -0.02 1.06 16 42 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 43 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.13 1.29 8.06 -2.91 -0.02 1.26 16 45 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 47 H 0.13 1.49 8.06 -2.91 -0.02 1.46 16 48 H 0.40 7.19 9.12 -74.06 -0.68 6.52 16 49 H 0.04 1.41 5.58 -2.39 -0.01 1.40 16 50 H 0.06 2.44 6.63 -2.39 -0.02 2.42 16 Total: -1.00 -78.14 404.40 -0.03 -78.17 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.53 Total: 25.37 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.85 Total: -1.41 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.14 Total: -113.14 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -1.87 Total: -36.84 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.66 Total: 47.86 kcal Total: -78.14 -0.03 -78.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083662367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.027 kcal (2) G-P(sol) polarization free energy of solvation -78.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds