Wall clock time and date at job start Wed Apr 1 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99724 * 2 1 4 4 H 1.48504 * 109.47457 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47309 * 120.00007 * 3 2 1 6 6 H 1.48500 * 109.47280 * 240.00024 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99740 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64524 * 179.71923 * 9 7 2 11 11 C 1.55133 * 104.72238 * 155.81596 * 10 9 7 12 12 H 1.08999 * 110.93989 * 155.28812 * 11 10 9 13 13 N 1.46504 * 111.18983 * 279.18847 * 11 10 9 14 14 C 1.34776 * 120.00160 * 267.18994 * 13 11 10 15 15 O 1.21285 * 119.99798 * 355.00269 * 14 13 11 16 16 C 1.50694 * 120.00197 * 175.00916 * 14 13 11 17 17 C 1.50702 * 110.01962 * 64.94253 * 16 14 13 18 18 C 1.38236 * 119.99806 * 5.80429 * 17 16 14 19 19 C 1.38235 * 119.99871 * 179.76581 * 18 17 16 20 20 C 1.38231 * 119.99799 * 0.51320 * 19 18 17 21 21 C 1.38233 * 120.00353 * 359.74120 * 20 19 18 22 22 C 1.38230 * 120.00101 * 186.07872 * 17 16 14 23 23 C 1.53875 * 110.03138 * 303.50111 * 16 14 13 24 24 C 1.54273 * 106.59712 * 240.71515 * 23 16 14 25 25 C 1.54885 * 104.19471 * 23.61069 * 24 23 16 26 26 C 1.54265 * 110.03245 * 186.33253 * 16 14 13 27 27 C 1.55155 * 101.48397 * 37.29078 * 11 10 9 28 28 H 1.09000 * 110.72006 * 82.70068 * 27 11 10 29 29 O 1.42905 * 110.71923 * 205.96982 * 27 11 10 30 30 C 1.47014 * 125.64773 * 0.02562 * 9 7 2 31 31 H 0.97001 * 120.00307 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.36906 * 274.73997 * 10 9 7 33 33 H 1.09000 * 110.37042 * 37.06451 * 10 9 7 34 34 H 0.97002 * 120.00098 * 87.18523 * 13 11 10 35 35 H 1.07999 * 119.99732 * 0.02562 * 18 17 16 36 36 H 1.07999 * 119.99806 * 180.22766 * 19 18 17 37 37 H 1.08008 * 119.99736 * 179.72539 * 20 19 18 38 38 H 1.08001 * 120.00121 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00489 * 0.02562 * 22 17 16 40 40 H 1.09003 * 110.03393 * 359.97438 * 23 16 14 41 41 H 1.08998 * 110.03253 * 121.43185 * 23 16 14 42 42 H 1.08997 * 110.48671 * 264.92610 * 24 23 16 43 43 H 1.09007 * 110.48348 * 142.28778 * 24 23 16 44 44 H 1.09002 * 110.75261 * 203.74124 * 25 24 23 45 45 H 1.08997 * 110.91913 * 80.44424 * 25 24 23 46 46 H 1.09000 * 110.48705 * 214.34738 * 26 16 14 47 47 H 1.08998 * 110.49154 * 336.86433 * 26 16 14 48 48 H 0.96694 * 113.99810 * 174.97319 * 29 27 11 49 49 H 1.09003 * 109.88565 * 300.44061 * 30 9 7 50 50 H 1.09000 * 109.88360 * 61.60735 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 1.9336 -3.7310 -0.0081 11 6 0.8516 -4.6566 0.6078 12 1 0.9834 -5.6858 0.2739 13 7 0.8573 -4.5773 2.0707 14 6 1.5888 -5.4512 2.7901 15 8 2.1696 -6.3587 2.2332 16 6 1.6848 -5.3011 4.2865 17 6 0.3315 -5.5139 4.9143 18 6 -0.7363 -5.9175 4.1347 19 6 -1.9766 -6.1174 4.7114 20 6 -2.1516 -5.9035 6.0658 21 6 -1.0851 -5.4948 6.8445 22 6 0.1565 -5.3001 6.2687 23 6 2.2181 -3.9023 4.6427 24 6 3.5358 -4.1168 5.4159 25 6 4.0190 -5.5166 4.9620 26 6 2.6969 -6.3167 4.8556 27 6 -0.4483 -4.0441 0.0227 28 1 -0.6309 -4.4173 -0.9850 29 8 -1.5633 -4.3167 0.8740 30 6 -0.1374 -2.5327 -0.0028 31 1 -0.4851 0.8400 -0.0004 32 1 2.1630 -4.0387 -1.0283 33 1 2.8352 -3.7423 0.6042 34 1 0.3347 -3.8957 2.5215 35 1 -0.6005 -6.0806 3.0757 36 1 -2.8100 -6.4362 4.1029 37 1 -3.1217 -6.0554 6.5156 38 1 -1.2219 -5.3273 7.9026 39 1 0.9896 -4.9801 6.8770 40 1 2.4079 -3.3323 3.7332 41 1 1.4983 -3.3769 5.2702 42 1 3.3536 -4.1059 6.4905 43 1 4.2660 -3.3545 5.1441 44 1 4.6788 -5.9584 5.7087 45 1 4.5161 -5.4616 3.9935 46 1 2.3793 -6.6612 5.8398 47 1 2.8133 -7.1611 4.1762 48 1 -2.3852 -3.8912 0.5939 49 1 -0.5582 -2.0528 0.8808 50 1 -0.5536 -2.0838 -0.9046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084030306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:59 Heat of formation + Delta-G solvation = -36.924334 kcal Electronic energy + Delta-G solvation = -32185.536284 eV Core-core repulsion = 28177.825734 eV Total energy + Delta-G solvation = -4007.710550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.86816 -38.86027 -37.95894 -36.69518 -35.06052 -33.73585 -32.14544 -31.37970 -30.80805 -28.78861 -28.44724 -27.78697 -26.97015 -24.47302 -23.12616 -22.21965 -21.62798 -20.59417 -20.41937 -19.83232 -19.07476 -17.61695 -17.02368 -16.66566 -16.44089 -15.73021 -15.35455 -15.06607 -14.75712 -14.60401 -14.46570 -14.25051 -13.96141 -13.48251 -13.38957 -13.20768 -12.93886 -12.80601 -12.66257 -12.40613 -12.01081 -11.94830 -11.52169 -11.37604 -11.28664 -11.22600 -11.08933 -11.06054 -10.89839 -10.86839 -10.77756 -10.64404 -10.53410 -10.21509 -10.11487 -9.85672 -9.37519 -9.27512 -8.86387 -8.77173 -8.64272 -8.45544 -6.91959 -5.79480 -3.12990 1.36606 1.45731 2.95109 3.36082 3.41023 3.41566 3.53305 3.79572 4.40661 4.50606 4.58245 4.65910 4.70623 4.97205 5.02584 5.07773 5.18130 5.21562 5.29246 5.40509 5.48646 5.50639 5.51586 5.53753 5.58592 5.65597 5.71213 5.74289 5.82108 5.92816 5.96594 6.01306 6.08003 6.09391 6.14610 6.24027 6.25793 6.32790 6.41422 6.45602 6.51023 6.57004 6.58724 6.64554 7.02011 7.04267 7.30521 7.42077 7.68832 7.98523 8.07412 8.15178 8.61631 9.12704 9.72901 10.36859 11.32172 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.004076 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.893419 B = 6867.069078 C = 7494.235911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.124 3.876 11 C 0.138 3.862 12 H 0.093 0.907 13 N -0.688 5.688 14 C 0.530 3.470 15 O -0.550 6.550 16 C -0.040 4.040 17 C -0.068 4.068 18 C -0.109 4.109 19 C -0.112 4.112 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.103 4.103 27 C 0.064 3.936 28 H 0.065 0.935 29 O -0.561 6.561 30 C 0.151 3.849 31 H 0.253 0.747 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.408 0.592 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.377 0.623 49 H 0.057 0.943 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 -11.409 11.740 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.327 5.327 10 C -0.004 4.004 11 C 0.032 3.968 12 H 0.111 0.889 13 N -0.338 5.338 14 C 0.315 3.685 15 O -0.428 6.428 16 C -0.043 4.043 17 C -0.068 4.068 18 C -0.127 4.127 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.128 4.128 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.161 4.161 26 C -0.141 4.141 27 C 0.004 3.996 28 H 0.083 0.917 29 O -0.366 6.366 30 C 0.026 3.974 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.244 0.756 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.105 0.895 48 H 0.224 0.776 49 H 0.075 0.925 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.277 -12.143 11.637 16.868 hybrid contribution -0.349 1.768 -0.284 1.824 sum -1.626 -10.376 11.353 15.466 Atomic orbital electron populations 1.69911 1.04860 1.25222 1.57143 1.24766 0.95718 0.97622 1.02119 0.86199 0.78476 0.83136 0.77951 1.21596 1.21160 1.21157 1.19004 0.90411 0.82207 1.43878 0.90435 1.44285 1.01035 0.99918 1.87416 1.22049 0.94901 0.86088 0.97318 1.22224 0.94875 0.99540 0.80141 0.88922 1.45590 1.47695 1.34050 1.06444 1.20131 0.78184 0.81389 0.88751 1.90631 1.46697 1.33080 1.72410 1.20401 0.93866 0.98159 0.91883 1.19563 0.93544 0.99788 0.93896 1.21376 0.92561 0.98351 1.00452 1.21116 0.97213 0.99764 0.94903 1.21135 0.98728 1.00265 0.94199 1.21065 0.93017 1.00357 0.99639 1.20898 0.97426 1.00369 0.94134 1.22370 0.97368 0.93925 1.01708 1.22364 0.96622 0.97446 0.99513 1.22498 0.96933 0.95126 1.01550 1.22408 0.93051 0.97732 1.00869 1.23537 0.85333 0.98494 0.92223 0.91675 1.86402 1.20257 1.75371 1.54574 1.21850 0.85459 0.88296 1.01843 0.93682 0.95113 0.93370 0.75604 0.85194 0.86113 0.86394 0.86273 0.86020 0.90175 0.90570 0.91650 0.91286 0.91500 0.91123 0.91085 0.89484 0.77643 0.92487 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.90 10.31 55.49 0.57 -25.33 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.10 10.28 -15.06 -0.15 -6.26 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.50 3.39 -169.94 -0.58 -15.07 16 10 C 0.12 2.56 6.95 -2.41 -0.02 2.54 16 11 C 0.14 2.52 3.35 -65.66 -0.22 2.30 16 12 H 0.09 1.67 7.48 -51.93 -0.39 1.28 16 13 N -0.69 -11.95 3.32 -51.61 -0.17 -12.12 16 14 C 0.53 9.01 4.85 -10.99 -0.05 8.96 16 15 O -0.55 -10.73 14.99 5.55 0.08 -10.65 16 16 C -0.04 -0.56 0.62 -155.70 -0.10 -0.66 16 17 C -0.07 -0.91 4.66 -104.62 -0.49 -1.39 16 18 C -0.11 -1.54 8.76 -39.58 -0.35 -1.89 16 19 C -0.11 -1.38 10.05 -39.58 -0.40 -1.78 16 20 C -0.13 -1.37 10.05 -39.59 -0.40 -1.77 16 21 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 22 C -0.11 -1.28 8.05 -39.58 -0.32 -1.60 16 23 C -0.12 -1.57 5.54 -25.61 -0.14 -1.71 16 24 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 25 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 26 C -0.10 -1.32 5.68 -25.07 -0.14 -1.47 16 27 C 0.06 1.13 4.12 -24.90 -0.10 1.03 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 O -0.56 -8.79 12.67 -35.23 -0.45 -9.24 16 30 C 0.15 3.37 5.13 -3.07 -0.02 3.36 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.41 7.34 8.08 -40.82 -0.33 7.01 16 35 H 0.13 2.05 5.94 -52.49 -0.31 1.74 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.22 7.84 -52.49 -0.41 0.81 16 40 H 0.08 1.29 7.47 -51.93 -0.39 0.90 16 41 H 0.08 0.98 7.02 -51.93 -0.36 0.61 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.80 7.33 -51.93 -0.38 0.42 16 47 H 0.09 1.27 6.77 -51.93 -0.35 0.92 16 48 H 0.38 4.63 9.11 45.56 0.42 5.04 16 49 H 0.06 1.42 7.30 -51.93 -0.38 1.04 16 50 H 0.05 1.13 7.51 -51.93 -0.39 0.74 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -30.47 392.04 -10.43 -40.90 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -7.05 Total: 14.49 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -3.73 Total: -5.49 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.18 Total: -52.52 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.36 Total: -19.89 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.47 -10.43 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084030306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.977 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds