Wall clock time and date at job start Wed Apr 1 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99724 * 2 1 4 4 H 1.48504 * 109.47457 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47309 * 120.00007 * 3 2 1 6 6 H 1.48500 * 109.47280 * 240.00024 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99740 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64524 * 179.71923 * 9 7 2 11 11 C 1.55133 * 104.72238 * 155.81596 * 10 9 7 12 12 H 1.08999 * 110.93989 * 155.28812 * 11 10 9 13 13 N 1.46504 * 111.18983 * 279.18847 * 11 10 9 14 14 C 1.34776 * 120.00160 * 267.18994 * 13 11 10 15 15 O 1.21285 * 119.99798 * 355.00269 * 14 13 11 16 16 C 1.50694 * 120.00197 * 175.00916 * 14 13 11 17 17 C 1.50702 * 110.01962 * 64.94253 * 16 14 13 18 18 C 1.38236 * 119.99806 * 5.80429 * 17 16 14 19 19 C 1.38235 * 119.99871 * 179.76581 * 18 17 16 20 20 C 1.38231 * 119.99799 * 0.51320 * 19 18 17 21 21 C 1.38233 * 120.00353 * 359.74120 * 20 19 18 22 22 C 1.38230 * 120.00101 * 186.07872 * 17 16 14 23 23 C 1.53875 * 110.03138 * 303.50111 * 16 14 13 24 24 C 1.54273 * 106.59712 * 240.71515 * 23 16 14 25 25 C 1.54885 * 104.19471 * 23.61069 * 24 23 16 26 26 C 1.54265 * 110.03245 * 186.33253 * 16 14 13 27 27 C 1.55155 * 101.48397 * 37.29078 * 11 10 9 28 28 H 1.09000 * 110.72006 * 82.70068 * 27 11 10 29 29 O 1.42905 * 110.71923 * 205.96982 * 27 11 10 30 30 C 1.47014 * 125.64773 * 0.02562 * 9 7 2 31 31 H 0.97001 * 120.00307 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.36906 * 274.73997 * 10 9 7 33 33 H 1.09000 * 110.37042 * 37.06451 * 10 9 7 34 34 H 0.97002 * 120.00098 * 87.18523 * 13 11 10 35 35 H 1.07999 * 119.99732 * 0.02562 * 18 17 16 36 36 H 1.07999 * 119.99806 * 180.22766 * 19 18 17 37 37 H 1.08008 * 119.99736 * 179.72539 * 20 19 18 38 38 H 1.08001 * 120.00121 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00489 * 0.02562 * 22 17 16 40 40 H 1.09003 * 110.03393 * 359.97438 * 23 16 14 41 41 H 1.08998 * 110.03253 * 121.43185 * 23 16 14 42 42 H 1.08997 * 110.48671 * 264.92610 * 24 23 16 43 43 H 1.09007 * 110.48348 * 142.28778 * 24 23 16 44 44 H 1.09002 * 110.75261 * 203.74124 * 25 24 23 45 45 H 1.08997 * 110.91913 * 80.44424 * 25 24 23 46 46 H 1.09000 * 110.48705 * 214.34738 * 26 16 14 47 47 H 1.08998 * 110.49154 * 336.86433 * 26 16 14 48 48 H 0.96694 * 113.99810 * 174.97319 * 29 27 11 49 49 H 1.09003 * 109.88565 * 300.44061 * 30 9 7 50 50 H 1.09000 * 109.88360 * 61.60735 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 1.9336 -3.7310 -0.0081 11 6 0.8516 -4.6566 0.6078 12 1 0.9834 -5.6858 0.2739 13 7 0.8573 -4.5773 2.0707 14 6 1.5888 -5.4512 2.7901 15 8 2.1696 -6.3587 2.2332 16 6 1.6848 -5.3011 4.2865 17 6 0.3315 -5.5139 4.9143 18 6 -0.7363 -5.9175 4.1347 19 6 -1.9766 -6.1174 4.7114 20 6 -2.1516 -5.9035 6.0658 21 6 -1.0851 -5.4948 6.8445 22 6 0.1565 -5.3001 6.2687 23 6 2.2181 -3.9023 4.6427 24 6 3.5358 -4.1168 5.4159 25 6 4.0190 -5.5166 4.9620 26 6 2.6969 -6.3167 4.8556 27 6 -0.4483 -4.0441 0.0227 28 1 -0.6309 -4.4173 -0.9850 29 8 -1.5633 -4.3167 0.8740 30 6 -0.1374 -2.5327 -0.0028 31 1 -0.4851 0.8400 -0.0004 32 1 2.1630 -4.0387 -1.0283 33 1 2.8352 -3.7423 0.6042 34 1 0.3347 -3.8957 2.5215 35 1 -0.6005 -6.0806 3.0757 36 1 -2.8100 -6.4362 4.1029 37 1 -3.1217 -6.0554 6.5156 38 1 -1.2219 -5.3273 7.9026 39 1 0.9896 -4.9801 6.8770 40 1 2.4079 -3.3323 3.7332 41 1 1.4983 -3.3769 5.2702 42 1 3.3536 -4.1059 6.4905 43 1 4.2660 -3.3545 5.1441 44 1 4.6788 -5.9584 5.7087 45 1 4.5161 -5.4616 3.9935 46 1 2.3793 -6.6612 5.8398 47 1 2.8133 -7.1611 4.1762 48 1 -2.3852 -3.8912 0.5939 49 1 -0.5582 -2.0528 0.8808 50 1 -0.5536 -2.0838 -0.9046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084030306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:57 Heat of formation + Delta-G solvation = -55.605613 kcal Electronic energy + Delta-G solvation = -32186.346365 eV Core-core repulsion = 28177.825734 eV Total energy + Delta-G solvation = -4008.520631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.06208 -40.18677 -39.23456 -37.86665 -36.62205 -35.32633 -33.69516 -32.67494 -31.73122 -30.34713 -29.59233 -29.09915 -28.48290 -26.34636 -24.24093 -23.17135 -22.80427 -22.17927 -21.60358 -21.30819 -20.32323 -19.00154 -18.64276 -18.08040 -17.60033 -17.29430 -16.56864 -16.29902 -16.16202 -15.93139 -15.64693 -15.62025 -15.28385 -14.97400 -14.50980 -14.40371 -14.28190 -14.07427 -13.95520 -13.77770 -13.67805 -13.18303 -13.13242 -12.88596 -12.74603 -12.57027 -12.45846 -12.30147 -12.07817 -12.05394 -12.02743 -11.91787 -11.87365 -11.69469 -11.62750 -11.46486 -10.88454 -10.76564 -10.69030 -10.02316 -9.75554 -9.56025 -8.91433 -7.87412 -5.22606 0.45510 0.54966 1.45497 1.47204 1.53549 1.59617 2.18166 2.46618 2.88236 3.13504 3.33516 3.46491 3.52271 3.60344 3.67063 3.82489 3.95114 3.97549 4.12251 4.18237 4.27837 4.32862 4.34742 4.47722 4.50338 4.54514 4.55819 4.61476 4.68770 4.74676 4.79165 4.81479 4.87316 4.96202 5.03612 5.05763 5.13975 5.20841 5.22442 5.31209 5.38929 5.44382 5.46472 5.55153 5.62944 5.67690 5.68516 5.70140 6.14373 6.14980 6.56721 6.84855 7.07116 7.21867 7.71561 8.35085 9.21962 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.004076 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.893419 B = 6867.069078 C = 7494.235911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.055 4.055 3 Si 0.973 3.027 4 H -0.292 1.292 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.614 5.614 10 C 0.124 3.876 11 C 0.144 3.856 12 H 0.100 0.900 13 N -0.686 5.686 14 C 0.528 3.472 15 O -0.579 6.579 16 C -0.035 4.035 17 C -0.080 4.080 18 C -0.132 4.132 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.100 4.100 27 C 0.087 3.913 28 H 0.087 0.913 29 O -0.559 6.559 30 C 0.165 3.835 31 H 0.248 0.752 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.405 0.595 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.394 0.606 49 H 0.027 0.973 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -11.839 14.259 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.249 4.249 3 Si 0.802 3.198 4 H -0.218 1.218 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.342 5.342 10 C -0.002 4.002 11 C 0.038 3.962 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.315 3.685 15 O -0.460 6.460 16 C -0.038 4.038 17 C -0.081 4.081 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.130 4.130 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.158 4.158 26 C -0.137 4.137 27 C 0.026 3.974 28 H 0.105 0.895 29 O -0.366 6.366 30 C 0.040 3.960 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.240 0.760 35 H 0.123 0.877 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.083 0.917 48 H 0.243 0.757 49 H 0.045 0.955 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.534 -12.591 14.156 19.007 hybrid contribution -0.308 1.865 -1.068 2.171 sum -1.842 -10.726 13.088 17.022 Atomic orbital electron populations 1.70107 1.05947 1.25383 1.57937 1.25502 0.96581 1.00488 1.02321 0.85236 0.77267 0.79235 0.78082 1.21835 1.20542 1.20601 1.19303 0.90739 0.83544 1.43532 0.90617 1.44478 1.01995 1.00484 1.87225 1.22125 0.95124 0.85246 0.97750 1.22093 0.94246 0.99083 0.80801 0.88259 1.45574 1.47752 1.34042 1.06036 1.20737 0.77054 0.80484 0.90205 1.90606 1.47815 1.34181 1.73380 1.20391 0.95126 0.98801 0.89450 1.19549 0.92683 1.00936 0.94888 1.21283 0.93923 1.00319 0.99513 1.21294 0.96752 0.99945 0.96032 1.21482 1.00165 0.99117 0.93491 1.21463 0.92287 0.98835 1.01137 1.21134 0.98718 0.99867 0.93254 1.22341 0.98949 0.93214 1.00652 1.22376 0.95113 0.96977 1.00833 1.22484 0.96693 0.95471 1.01175 1.22409 0.93311 0.96734 1.01275 1.23220 0.85869 0.94798 0.93509 0.89505 1.86388 1.20565 1.75246 1.54357 1.21603 0.84293 0.91232 0.98913 0.94277 0.94154 0.94692 0.75972 0.87698 0.85294 0.83767 0.83211 0.84016 0.93571 0.89677 0.88705 0.91465 0.88816 0.93541 0.88819 0.91708 0.75653 0.95509 0.96535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.35 10.31 21.65 0.22 -54.13 16 2 C -0.06 -3.06 5.49 84.86 0.47 -2.59 16 3 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.24 -13.36 10.28 84.03 0.86 -12.49 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.61 -30.65 3.39 -691.57 -2.35 -32.99 16 10 C 0.12 5.28 6.95 86.93 0.60 5.88 16 11 C 0.14 5.36 3.35 46.46 0.16 5.52 16 12 H 0.10 3.61 7.48 -2.39 -0.02 3.59 16 13 N -0.69 -24.63 3.32 -435.60 -1.44 -26.08 16 14 C 0.53 18.55 4.85 87.66 0.42 18.97 16 15 O -0.58 -23.45 14.99 -3.04 -0.05 -23.49 16 16 C -0.03 -0.97 0.62 -52.95 -0.03 -1.00 16 17 C -0.08 -2.07 4.66 -19.87 -0.09 -2.17 16 18 C -0.13 -3.71 8.76 22.27 0.20 -3.51 16 19 C -0.12 -2.87 10.05 22.27 0.22 -2.64 16 20 C -0.12 -2.37 10.05 22.27 0.22 -2.14 16 21 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 22 C -0.11 -2.29 8.05 22.27 0.18 -2.11 16 23 C -0.11 -3.04 5.54 31.32 0.17 -2.87 16 24 C -0.12 -2.44 6.83 31.67 0.22 -2.22 16 25 C -0.12 -2.69 6.91 31.89 0.22 -2.47 16 26 C -0.10 -2.47 5.68 31.67 0.18 -2.29 16 27 C 0.09 3.06 4.12 31.78 0.13 3.20 16 28 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 29 O -0.56 -17.33 12.67 -148.98 -1.89 -19.21 16 30 C 0.17 7.61 5.13 86.73 0.45 8.06 16 31 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.41 15.14 8.08 -92.71 -0.75 14.39 16 35 H 0.10 3.42 5.94 -2.91 -0.02 3.40 16 36 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.14 2.27 7.84 -2.91 -0.02 2.25 16 40 H 0.05 1.53 7.47 -2.39 -0.02 1.52 16 41 H 0.08 2.09 7.02 -2.39 -0.02 2.07 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.09 1.89 7.33 -2.39 -0.02 1.87 16 47 H 0.06 1.91 6.77 -2.39 -0.02 1.90 16 48 H 0.39 9.38 9.11 -74.06 -0.67 8.70 16 49 H 0.03 1.39 7.30 -2.39 -0.02 1.37 16 50 H 0.02 0.85 7.51 -2.39 -0.02 0.83 16 Total: -1.00 -68.05 392.04 0.86 -67.19 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -0.46 Total: 40.53 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 4.80 Total: 1.21 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -3.57 Total: -113.20 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.93 Total: -42.71 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -68.05 0.86 -67.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084030306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.583 kcal (2) G-P(sol) polarization free energy of solvation -68.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds