Wall clock time and date at job start Wed Apr 1 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47472 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47533 * 299.99970 * 3 2 1 6 6 H 1.48505 * 109.46965 * 60.00154 * 3 2 1 7 7 C 1.38813 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00368 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99541 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99833 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47430 * 34.99908 * 10 9 7 12 12 C 1.52998 * 109.47180 * 275.00209 * 10 9 7 13 13 C 1.53003 * 109.47440 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46970 * 60.00069 * 13 12 10 15 15 C 1.53001 * 109.46852 * 299.99864 * 14 13 12 16 16 C 1.53000 * 109.47349 * 155.00005 * 10 9 7 17 17 H 1.09005 * 109.46693 * 60.00095 * 16 10 9 18 18 N 1.46497 * 109.46966 * 300.00176 * 16 10 9 19 19 C 1.34780 * 119.99920 * 155.00036 * 18 16 10 20 20 O 1.21280 * 119.99651 * 354.96063 * 19 18 16 21 21 C 1.50699 * 119.99975 * 174.96488 * 19 18 16 22 22 H 1.09006 * 109.33390 * 231.06383 * 21 19 18 23 23 O 1.42724 * 109.33774 * 350.73188 * 21 19 18 24 24 C 1.43159 * 113.16927 * 172.17627 * 23 21 19 25 25 C 1.52964 * 108.34128 * 289.10104 * 24 23 21 26 26 C 1.50747 * 109.76276 * 49.26675 * 25 24 23 27 27 C 1.38591 * 118.76528 * 163.21233 * 26 25 24 28 28 C 1.38077 * 120.27339 * 179.52823 * 27 26 25 29 29 C 1.38262 * 119.86016 * 0.02562 * 28 27 26 30 30 C 1.38045 * 119.89832 * 0.09094 * 29 28 27 31 31 C 1.37908 * 121.34760 * 342.92429 * 26 25 24 32 32 H 0.96997 * 119.99721 * 0.02562 * 1 2 3 33 33 H 0.96998 * 120.00386 * 0.02562 * 9 7 2 34 34 H 1.09005 * 109.47218 * 300.00124 * 12 10 9 35 35 H 1.09001 * 109.47162 * 59.99728 * 12 10 9 36 36 H 1.08999 * 109.47210 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.47005 * 300.00236 * 13 12 10 38 38 H 1.08996 * 109.47361 * 59.99742 * 14 13 12 39 39 H 1.08990 * 109.46924 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.47031 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.47563 * 300.00102 * 15 14 13 42 42 H 0.96999 * 120.00049 * 334.98990 * 18 16 10 43 43 H 1.09000 * 109.66823 * 169.46667 * 24 23 21 44 44 H 1.09000 * 109.91294 * 48.87634 * 24 23 21 45 45 H 1.09004 * 109.42392 * 289.18310 * 25 24 23 46 46 H 1.09001 * 109.37889 * 169.32442 * 25 24 23 47 47 H 1.07995 * 119.86462 * 359.52818 * 27 26 25 48 48 H 1.08001 * 120.06164 * 180.02562 * 28 27 26 49 49 H 1.08004 * 120.04349 * 180.11153 * 29 28 27 50 50 H 1.08005 * 119.84636 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5506 0.5889 12 6 2.4220 -4.0356 -1.4375 13 6 3.1876 -5.3603 -1.4375 14 6 2.3109 -6.4560 -0.8278 15 6 1.9471 -6.0772 0.6093 16 6 1.1810 -4.7522 0.6091 17 1 0.2703 -4.8584 0.0196 18 7 0.8325 -4.3894 1.9850 19 6 -0.2855 -4.8863 2.5504 20 8 -1.0501 -5.5594 1.8922 21 6 -0.5854 -4.6056 4.0003 22 1 -0.8022 -5.5433 4.5121 23 8 0.5493 -3.9877 4.6066 24 6 0.2943 -3.5232 5.9365 25 6 -0.6331 -2.3096 5.8529 26 6 -1.8092 -2.6270 4.9650 27 6 -2.9313 -1.8162 5.0291 28 6 -4.0225 -2.0726 4.2228 29 6 -3.9956 -3.1431 3.3481 30 6 -2.8792 -3.9526 3.2854 31 6 -1.7833 -3.6969 4.0951 32 1 -0.4849 0.8400 -0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 1.5113 -4.1418 -2.0270 35 1 3.0470 -3.2552 -1.8718 36 1 3.4473 -5.6299 -2.4612 37 1 4.0983 -5.2536 -0.8482 38 1 1.4002 -6.5626 -1.4170 39 1 2.8564 -7.3995 -0.8274 40 1 1.3229 -6.8579 1.0439 41 1 2.8577 -5.9705 1.1986 42 1 1.4065 -3.7917 2.4892 43 1 1.2325 -3.2353 6.4108 44 1 -0.1842 -4.3103 6.5193 45 1 -0.0853 -1.4626 5.4398 46 1 -0.9904 -2.0580 6.8515 47 1 -2.9524 -0.9803 5.7126 48 1 -4.8950 -1.4383 4.2753 49 1 -4.8468 -3.3453 2.7147 50 1 -2.8593 -4.7888 2.6021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085293075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:55 Heat of formation + Delta-G solvation = -57.972655 kcal Electronic energy + Delta-G solvation = -31716.021447 eV Core-core repulsion = 27707.398173 eV Total energy + Delta-G solvation = -4008.623273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.70182 -39.23191 -37.73800 -37.45141 -33.98905 -33.66165 -32.99963 -31.66325 -31.09621 -29.73892 -29.00186 -27.66956 -26.05755 -23.89024 -23.67278 -22.61939 -21.89766 -21.02205 -20.30235 -19.87920 -19.40427 -17.43601 -17.26311 -16.93247 -16.34643 -15.62877 -15.36129 -15.31693 -14.90260 -14.60865 -14.31268 -14.04263 -13.83010 -13.61309 -13.59388 -13.41807 -13.09035 -12.90562 -12.64534 -12.60040 -12.45144 -12.06332 -12.00035 -11.87741 -11.70748 -11.16700 -11.03660 -10.90387 -10.78415 -10.71676 -10.67773 -10.53192 -10.28504 -10.10770 -9.77418 -9.71080 -9.59261 -9.53973 -8.88728 -8.60054 -8.51714 -8.44139 -6.93089 -5.72973 -3.02306 1.40094 1.54488 2.87536 3.42845 3.48582 3.48883 3.50901 3.61744 3.91234 4.58840 4.64188 4.65374 4.83559 5.03385 5.07819 5.10753 5.15911 5.17618 5.26327 5.26721 5.40300 5.43358 5.50462 5.56906 5.57747 5.73759 5.76817 5.81923 5.86520 5.88831 5.94311 6.00045 6.01789 6.10993 6.15438 6.22313 6.35817 6.49505 6.51737 6.55051 6.56540 6.62301 6.63516 6.68343 6.88988 6.90662 6.96933 7.13464 7.15057 7.72124 8.00590 8.43460 8.58918 9.55459 10.12530 10.47728 11.48744 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007779 B = 0.004987 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.646185 B = 5612.889507 C = 7689.768428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.011 4.011 3 Si 0.902 3.098 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.174 3.826 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.137 3.863 17 H 0.084 0.916 18 N -0.687 5.687 19 C 0.535 3.465 20 O -0.547 6.547 21 C 0.120 3.880 22 H 0.098 0.902 23 O -0.366 6.366 24 C 0.064 3.936 25 C -0.118 4.118 26 C -0.063 4.063 27 C -0.124 4.124 28 C -0.110 4.110 29 C -0.123 4.123 30 C -0.097 4.097 31 C -0.114 4.114 32 H 0.253 0.747 33 H 0.385 0.615 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.412 0.588 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.122 0.878 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 -10.648 11.204 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.063 3.937 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.162 4.162 16 C 0.032 3.968 17 H 0.102 0.898 18 N -0.336 5.336 19 C 0.319 3.681 20 O -0.426 6.426 21 C 0.059 3.941 22 H 0.116 0.884 23 O -0.285 6.285 24 C -0.013 4.013 25 C -0.155 4.155 26 C -0.063 4.063 27 C -0.142 4.142 28 C -0.128 4.128 29 C -0.141 4.141 30 C -0.115 4.115 31 C -0.115 4.115 32 H 0.063 0.937 33 H 0.219 0.781 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.249 0.751 43 H 0.121 0.879 44 H 0.074 0.926 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.478 -10.935 10.659 15.341 hybrid contribution 0.053 1.496 0.271 1.521 sum -1.425 -9.439 10.930 14.512 Atomic orbital electron populations 1.69689 1.04995 1.25313 1.57426 1.24719 0.95417 0.97497 1.03064 0.86194 0.78808 0.84530 0.77096 1.20612 1.22008 1.22035 1.19228 0.90877 0.84012 1.42778 0.91220 1.42398 1.05790 0.99439 1.88427 1.20448 0.93939 0.85806 0.93508 0.93184 1.22222 0.99901 0.95496 0.99749 1.21580 0.98538 0.95705 0.99920 1.21467 0.99892 0.97997 0.95771 1.21881 1.00083 0.97109 0.97159 1.21366 0.99041 0.94092 0.82337 0.89756 1.45853 1.24823 1.47975 1.14915 1.19784 0.81429 0.79423 0.87420 1.90651 1.47919 1.41151 1.62883 1.21015 0.85263 0.95415 0.92402 0.88434 1.88026 1.33228 1.77897 1.29346 1.22622 1.00142 0.94954 0.83579 1.21165 0.94923 1.00143 0.99254 1.19385 0.95362 0.94564 0.96983 1.20964 0.93317 0.99340 1.00532 1.21123 0.98347 0.97324 0.96007 1.21090 0.98461 0.95678 0.98915 1.21476 0.92298 1.00249 0.97495 1.19624 0.95692 0.97373 0.98827 0.93704 0.78148 0.92493 0.91633 0.92723 0.92383 0.91992 0.92411 0.92088 0.91916 0.75123 0.87864 0.92553 0.89032 0.89792 0.86109 0.86124 0.85975 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.67 4.95 -53.42 -0.26 -17.94 16 10 C 0.17 3.38 2.29 -67.93 -0.16 3.22 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.13 -2.35 5.50 -26.73 -0.15 -2.49 16 13 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.11 -1.50 5.92 -26.73 -0.16 -1.65 16 15 C -0.12 -1.79 5.50 -26.70 -0.15 -1.94 16 16 C 0.14 2.41 2.02 -67.90 -0.14 2.28 16 17 H 0.08 1.68 7.51 -51.93 -0.39 1.29 16 18 N -0.69 -12.16 4.83 -53.78 -0.26 -12.42 16 19 C 0.53 9.45 6.82 -10.98 -0.07 9.37 16 20 O -0.55 -10.68 14.44 5.56 0.08 -10.60 16 21 C 0.12 1.81 3.23 -29.06 -0.09 1.71 16 22 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 23 O -0.37 -5.19 9.19 -35.23 -0.32 -5.52 16 24 C 0.06 0.68 6.85 37.14 0.25 0.94 16 25 C -0.12 -1.38 6.00 -27.88 -0.17 -1.55 16 26 C -0.06 -0.92 5.78 -104.59 -0.60 -1.52 16 27 C -0.12 -1.70 9.67 -39.51 -0.38 -2.08 16 28 C -0.11 -1.51 10.05 -39.63 -0.40 -1.91 16 29 C -0.12 -1.82 10.05 -39.64 -0.40 -2.22 16 30 C -0.10 -1.59 9.06 -39.50 -0.36 -1.95 16 31 C -0.11 -1.82 5.46 -104.62 -0.57 -2.39 16 32 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.38 10.50 7.80 -40.82 -0.32 10.18 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.41 7.43 7.48 -40.82 -0.31 7.13 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 48 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 49 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 50 H 0.14 2.43 5.84 -52.48 -0.31 2.12 16 LS Contribution 395.70 15.07 5.96 5.96 Total: -1.00 -31.58 395.70 -11.09 -42.68 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -8.05 Total: 18.80 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -3.94 Total: -11.00 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.20 Total: -57.65 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.24 Total: -16.11 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.58 -11.09 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085293075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.295 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds