Wall clock time and date at job start Wed Apr 1 2020 02:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47472 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47533 * 299.99970 * 3 2 1 6 6 H 1.48505 * 109.46965 * 60.00154 * 3 2 1 7 7 C 1.38813 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00368 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99541 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99833 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47430 * 34.99908 * 10 9 7 12 12 C 1.52998 * 109.47180 * 275.00209 * 10 9 7 13 13 C 1.53003 * 109.47440 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46970 * 60.00069 * 13 12 10 15 15 C 1.53001 * 109.46852 * 299.99864 * 14 13 12 16 16 C 1.53000 * 109.47349 * 155.00005 * 10 9 7 17 17 H 1.09005 * 109.46693 * 60.00095 * 16 10 9 18 18 N 1.46497 * 109.46966 * 300.00176 * 16 10 9 19 19 C 1.34780 * 119.99920 * 155.00036 * 18 16 10 20 20 O 1.21280 * 119.99651 * 354.96063 * 19 18 16 21 21 C 1.50699 * 119.99975 * 174.96488 * 19 18 16 22 22 H 1.09006 * 109.33390 * 231.06383 * 21 19 18 23 23 O 1.42724 * 109.33774 * 350.73188 * 21 19 18 24 24 C 1.43159 * 113.16927 * 172.17627 * 23 21 19 25 25 C 1.52964 * 108.34128 * 289.10104 * 24 23 21 26 26 C 1.50747 * 109.76276 * 49.26675 * 25 24 23 27 27 C 1.38591 * 118.76528 * 163.21233 * 26 25 24 28 28 C 1.38077 * 120.27339 * 179.52823 * 27 26 25 29 29 C 1.38262 * 119.86016 * 0.02562 * 28 27 26 30 30 C 1.38045 * 119.89832 * 0.09094 * 29 28 27 31 31 C 1.37908 * 121.34760 * 342.92429 * 26 25 24 32 32 H 0.96997 * 119.99721 * 0.02562 * 1 2 3 33 33 H 0.96998 * 120.00386 * 0.02562 * 9 7 2 34 34 H 1.09005 * 109.47218 * 300.00124 * 12 10 9 35 35 H 1.09001 * 109.47162 * 59.99728 * 12 10 9 36 36 H 1.08999 * 109.47210 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.47005 * 300.00236 * 13 12 10 38 38 H 1.08996 * 109.47361 * 59.99742 * 14 13 12 39 39 H 1.08990 * 109.46924 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.47031 * 180.02562 * 15 14 13 41 41 H 1.08996 * 109.47563 * 300.00102 * 15 14 13 42 42 H 0.96999 * 120.00049 * 334.98990 * 18 16 10 43 43 H 1.09000 * 109.66823 * 169.46667 * 24 23 21 44 44 H 1.09000 * 109.91294 * 48.87634 * 24 23 21 45 45 H 1.09004 * 109.42392 * 289.18310 * 25 24 23 46 46 H 1.09001 * 109.37889 * 169.32442 * 25 24 23 47 47 H 1.07995 * 119.86462 * 359.52818 * 27 26 25 48 48 H 1.08001 * 120.06164 * 180.02562 * 28 27 26 49 49 H 1.08004 * 120.04349 * 180.11153 * 29 28 27 50 50 H 1.08005 * 119.84636 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5506 0.5889 12 6 2.4220 -4.0356 -1.4375 13 6 3.1876 -5.3603 -1.4375 14 6 2.3109 -6.4560 -0.8278 15 6 1.9471 -6.0772 0.6093 16 6 1.1810 -4.7522 0.6091 17 1 0.2703 -4.8584 0.0196 18 7 0.8325 -4.3894 1.9850 19 6 -0.2855 -4.8863 2.5504 20 8 -1.0501 -5.5594 1.8922 21 6 -0.5854 -4.6056 4.0003 22 1 -0.8022 -5.5433 4.5121 23 8 0.5493 -3.9877 4.6066 24 6 0.2943 -3.5232 5.9365 25 6 -0.6331 -2.3096 5.8529 26 6 -1.8092 -2.6270 4.9650 27 6 -2.9313 -1.8162 5.0291 28 6 -4.0225 -2.0726 4.2228 29 6 -3.9956 -3.1431 3.3481 30 6 -2.8792 -3.9526 3.2854 31 6 -1.7833 -3.6969 4.0951 32 1 -0.4849 0.8400 -0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 1.5113 -4.1418 -2.0270 35 1 3.0470 -3.2552 -1.8718 36 1 3.4473 -5.6299 -2.4612 37 1 4.0983 -5.2536 -0.8482 38 1 1.4002 -6.5626 -1.4170 39 1 2.8564 -7.3995 -0.8274 40 1 1.3229 -6.8579 1.0439 41 1 2.8577 -5.9705 1.1986 42 1 1.4065 -3.7917 2.4892 43 1 1.2325 -3.2353 6.4108 44 1 -0.1842 -4.3103 6.5193 45 1 -0.0853 -1.4626 5.4398 46 1 -0.9904 -2.0580 6.8515 47 1 -2.9524 -0.9803 5.7126 48 1 -4.8950 -1.4383 4.2753 49 1 -4.8468 -3.3453 2.7147 50 1 -2.8593 -4.7888 2.6021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085293075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:54 Heat of formation + Delta-G solvation = -77.163228 kcal Electronic energy + Delta-G solvation = -31716.853613 eV Core-core repulsion = 27707.398173 eV Total energy + Delta-G solvation = -4009.455439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.89333 -40.54926 -39.10945 -38.55673 -35.81120 -35.08683 -34.04425 -32.98936 -32.78446 -30.92889 -30.24814 -29.28249 -27.23900 -25.62763 -24.86507 -23.84152 -23.16355 -22.48866 -21.55409 -21.11273 -20.71192 -19.21703 -18.53034 -18.27527 -17.66242 -16.90326 -16.65081 -16.54041 -16.27644 -15.88985 -15.77597 -15.43996 -15.30263 -14.94514 -14.77336 -14.63229 -14.53017 -14.32144 -14.02746 -13.76116 -13.61791 -13.51232 -13.39189 -12.92457 -12.89612 -12.85798 -12.76370 -12.26978 -12.20005 -12.12259 -12.01952 -12.01515 -11.65547 -11.60859 -11.43270 -11.11745 -11.02781 -10.80395 -10.76239 -9.92641 -9.75082 -9.59014 -8.98182 -7.90017 -5.18946 0.26613 0.40481 1.46003 1.46774 1.50185 1.56404 2.20440 2.51377 2.56503 2.78761 3.42811 3.50732 3.63979 3.70290 3.80881 3.87596 3.90124 4.06291 4.13745 4.17609 4.22475 4.27013 4.31708 4.33276 4.43958 4.48747 4.54470 4.56297 4.59783 4.70100 4.71161 4.84279 4.94603 4.96475 5.00706 5.02984 5.16008 5.17587 5.24965 5.29528 5.31544 5.45640 5.46760 5.52217 5.54047 5.54416 5.58327 5.67846 5.89980 6.03639 6.28667 6.59034 7.18213 7.35285 8.09252 8.33817 9.32836 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007779 B = 0.004987 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.646185 B = 5612.889507 C = 7689.768428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.299 1.299 6 H -0.297 1.297 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.730 5.730 10 C 0.172 3.828 11 H 0.055 0.945 12 C -0.127 4.127 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.114 4.114 16 C 0.144 3.856 17 H 0.053 0.947 18 N -0.689 5.689 19 C 0.528 3.472 20 O -0.572 6.572 21 C 0.129 3.871 22 H 0.116 0.884 23 O -0.381 6.381 24 C 0.057 3.943 25 C -0.116 4.116 26 C -0.076 4.076 27 C -0.130 4.130 28 C -0.115 4.115 29 C -0.138 4.138 30 C -0.122 4.122 31 C -0.134 4.134 32 H 0.246 0.754 33 H 0.367 0.633 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.411 0.589 43 H 0.129 0.871 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.117 0.883 47 H 0.148 0.852 48 H 0.148 0.852 49 H 0.136 0.864 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.590 -11.057 12.720 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.227 1.227 6 H -0.224 1.224 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.369 5.369 10 C 0.064 3.936 11 H 0.073 0.927 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.153 4.153 16 C 0.038 3.962 17 H 0.072 0.928 18 N -0.337 5.337 19 C 0.314 3.686 20 O -0.454 6.454 21 C 0.068 3.932 22 H 0.134 0.866 23 O -0.300 6.300 24 C -0.018 4.018 25 C -0.153 4.153 26 C -0.076 4.076 27 C -0.148 4.148 28 C -0.133 4.133 29 C -0.156 4.156 30 C -0.140 4.140 31 C -0.135 4.135 32 H 0.055 0.945 33 H 0.198 0.802 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.247 0.753 43 H 0.147 0.853 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.135 0.865 47 H 0.166 0.834 48 H 0.166 0.834 49 H 0.153 0.847 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.445 -11.385 12.178 16.677 hybrid contribution -0.544 1.598 -0.197 1.700 sum -0.099 -9.786 11.981 15.470 Atomic orbital electron populations 1.69867 1.06626 1.25429 1.59848 1.25483 0.96156 1.00802 1.04207 0.85166 0.78468 0.80400 0.76302 1.18765 1.22692 1.22407 1.19600 0.91314 0.84895 1.40270 0.90376 1.42560 1.05032 1.00785 1.88507 1.20665 0.93756 0.84338 0.94881 0.92689 1.22082 0.99489 0.97566 0.97634 1.21517 0.98362 0.93265 1.01612 1.21474 0.99869 0.99090 0.94303 1.21819 1.00053 0.94760 0.98633 1.21264 0.97715 0.95224 0.81973 0.92838 1.45891 1.24998 1.47995 1.14774 1.20308 0.80798 0.78838 0.88682 1.90628 1.48477 1.42287 1.63974 1.20859 0.85336 0.96244 0.90760 0.86647 1.87998 1.32773 1.78048 1.31208 1.22946 1.01537 0.95123 0.82212 1.21239 0.93880 0.99964 1.00187 1.19817 0.96730 0.94003 0.97064 1.21397 0.92941 0.99767 1.00715 1.21502 0.99453 0.97031 0.95271 1.21359 0.98541 0.96024 0.99628 1.21498 0.93667 1.00664 0.98212 1.19824 0.95744 0.98434 0.99493 0.94528 0.80237 0.94108 0.93173 0.90732 0.90986 0.92771 0.89241 0.92235 0.90349 0.75309 0.85319 0.90491 0.90550 0.86500 0.83422 0.83422 0.84652 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 7 C -0.23 -12.51 9.93 84.03 0.83 -11.68 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -36.81 4.95 -322.93 -1.60 -38.41 16 10 C 0.17 6.74 2.29 44.99 0.10 6.84 16 11 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 12 C -0.13 -4.46 5.50 30.59 0.17 -4.29 16 13 C -0.11 -2.78 5.92 30.60 0.18 -2.60 16 14 C -0.11 -2.63 5.92 30.60 0.18 -2.45 16 15 C -0.11 -3.16 5.50 30.61 0.17 -2.99 16 16 C 0.14 5.15 2.02 45.01 0.09 5.24 16 17 H 0.05 2.25 7.51 -2.38 -0.02 2.24 16 18 N -0.69 -24.95 4.83 -442.44 -2.14 -27.09 16 19 C 0.53 19.29 6.82 87.66 0.60 19.88 16 20 O -0.57 -23.53 14.44 -3.03 -0.04 -23.57 16 21 C 0.13 3.91 3.23 29.09 0.09 4.00 16 22 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 23 O -0.38 -10.50 9.19 -148.98 -1.37 -11.87 16 24 C 0.06 1.11 6.85 71.97 0.49 1.60 16 25 C -0.12 -2.50 6.00 29.85 0.18 -2.32 16 26 C -0.08 -2.16 5.78 -19.84 -0.11 -2.28 16 27 C -0.13 -3.44 9.67 22.32 0.22 -3.22 16 28 C -0.11 -3.07 10.05 22.24 0.22 -2.85 16 29 C -0.14 -4.17 10.05 22.23 0.22 -3.94 16 30 C -0.12 -4.20 9.06 22.32 0.20 -4.00 16 31 C -0.13 -4.34 5.46 -19.86 -0.11 -4.45 16 32 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.37 20.98 7.80 -92.71 -0.72 20.25 16 34 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.41 15.04 7.48 -92.71 -0.69 14.34 16 43 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 45 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 47 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 48 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 49 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 50 H 0.12 4.61 5.84 -2.91 -0.02 4.59 16 Total: -1.00 -71.04 395.70 0.90 -70.14 By element: Atomic # 1 Polarization: 56.15 SS G_CDS: -0.47 Total: 55.68 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 4.20 Total: -13.30 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -3.45 Total: -125.50 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.41 Total: -35.44 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -71.04 0.90 -70.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085293075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.023 kcal (2) G-P(sol) polarization free energy of solvation -71.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds