Wall clock time and date at job start Wed Apr 1 2020 02:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99852 * 2 1 4 4 H 1.48499 * 109.46742 * 269.99540 * 3 2 1 5 5 H 1.48498 * 109.47120 * 29.99630 * 3 2 1 6 6 H 1.48498 * 109.47171 * 150.00038 * 3 2 1 7 7 C 1.38811 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00261 * 359.72847 * 7 2 1 10 10 C 1.46494 * 120.00141 * 180.26984 * 9 7 2 11 11 H 1.09000 * 109.47189 * 35.00723 * 10 9 7 12 12 C 1.52998 * 109.47560 * 274.99982 * 10 9 7 13 13 C 1.53004 * 109.47542 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46798 * 59.99897 * 13 12 10 15 15 C 1.52998 * 109.47158 * 300.00338 * 14 13 12 16 16 C 1.53002 * 109.46838 * 155.00233 * 10 9 7 17 17 H 1.08996 * 109.47531 * 60.00343 * 16 10 9 18 18 N 1.46502 * 109.47272 * 299.99840 * 16 10 9 19 19 C 1.34769 * 120.00248 * 154.99878 * 18 16 10 20 20 O 1.21287 * 119.99907 * 354.90430 * 19 18 16 21 21 C 1.50699 * 120.00549 * 174.89892 * 19 18 16 22 22 H 1.09000 * 109.43168 * 335.31863 * 21 19 18 23 23 C 1.53068 * 109.44318 * 215.40552 * 21 19 18 24 24 C 1.53385 * 108.31588 * 191.69933 * 23 21 19 25 25 O 1.42827 * 108.33635 * 64.77043 * 24 23 21 26 26 C 1.35845 * 117.85590 * 310.78341 * 25 24 23 27 27 C 1.39148 * 118.49045 * 196.97689 * 26 25 24 28 28 C 1.37969 * 120.21034 * 180.44019 * 27 26 25 29 29 C 1.38290 * 119.95752 * 359.95462 * 28 27 26 30 30 C 1.38103 * 119.98732 * 359.93824 * 29 28 27 31 31 C 1.38373 * 121.80785 * 17.25285 * 26 25 24 32 32 H 0.97001 * 119.99891 * 0.02562 * 1 2 3 33 33 H 0.97006 * 119.99895 * 0.27790 * 9 7 2 34 34 H 1.08995 * 109.47055 * 300.00424 * 12 10 9 35 35 H 1.09005 * 109.46913 * 59.99939 * 12 10 9 36 36 H 1.09001 * 109.46694 * 300.00585 * 13 12 10 37 37 H 1.08995 * 109.47207 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46547 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.46561 * 60.00449 * 14 13 12 40 40 H 1.08995 * 109.47055 * 299.99693 * 15 14 13 41 41 H 1.09005 * 109.46913 * 180.02562 * 15 14 13 42 42 H 0.96999 * 119.99926 * 335.00672 * 18 16 10 43 43 H 1.09000 * 109.69788 * 311.44707 * 23 21 19 44 44 H 1.09004 * 109.69255 * 72.03326 * 23 21 19 45 45 H 1.09004 * 109.70982 * 305.05314 * 24 23 21 46 46 H 1.08999 * 109.72081 * 184.49451 * 24 23 21 47 47 H 1.08000 * 119.89492 * 0.43649 * 27 26 25 48 48 H 1.07999 * 120.02288 * 179.97438 * 28 27 26 49 49 H 1.08001 * 120.00800 * 179.91193 * 29 28 27 50 50 H 1.08001 * 119.84102 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0067 10 6 2.0582 -3.6567 0.0132 11 1 2.9688 -3.5474 0.6022 12 6 2.4221 -4.0430 -1.4218 13 6 3.1877 -5.3677 -1.4149 14 6 2.3110 -6.4602 -0.7993 15 6 1.9471 -6.0738 0.6357 16 6 1.1810 -4.7489 0.6285 17 1 0.2703 -4.8582 0.0396 18 7 0.8325 -4.3791 2.0026 19 6 -0.2854 -4.8729 2.5705 20 8 -1.0508 -5.5484 1.9155 21 6 -0.5847 -4.5860 4.0193 22 1 0.3453 -4.3729 4.5464 23 6 -1.2602 -5.8056 4.6513 24 6 -1.8155 -5.3935 6.0204 25 8 -2.8408 -4.4206 5.8151 26 6 -2.5644 -3.3694 5.0003 27 6 -3.3847 -2.2472 5.0631 28 6 -3.1418 -1.1630 4.2451 29 6 -2.0795 -1.1899 3.3601 30 6 -1.2620 -2.3012 3.2966 31 6 -1.5007 -3.3924 4.1156 32 1 -0.4850 0.8401 -0.0004 33 1 0.3556 -2.3881 0.0066 34 1 1.5114 -4.1523 -2.0106 35 1 3.0470 -3.2649 -1.8601 36 1 4.0984 -5.2579 -0.8260 37 1 3.4473 -5.6426 -2.4371 38 1 2.8563 -7.4039 -0.7948 39 1 1.4003 -6.5699 -1.3881 40 1 2.8578 -5.9641 1.2245 41 1 1.3229 -6.8524 1.0744 42 1 1.4064 -3.7787 2.5036 43 1 -2.0741 -6.1472 4.0118 44 1 -0.5306 -6.6056 4.7771 45 1 -1.0178 -4.9640 6.6265 46 1 -2.2320 -6.2648 6.5258 47 1 -4.2142 -2.2248 5.7544 48 1 -3.7807 -0.2937 4.2961 49 1 -1.8895 -0.3423 2.7184 50 1 -0.4328 -2.3195 2.6049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085364960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:56 Heat of formation + Delta-G solvation = -56.256240 kcal Electronic energy + Delta-G solvation = -31705.097323 eV Core-core repulsion = 27696.548479 eV Total energy + Delta-G solvation = -4008.548844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92687 -39.45757 -37.83690 -37.27443 -34.13437 -34.03500 -33.73906 -31.17374 -30.56130 -29.92347 -29.36649 -27.81740 -26.13649 -23.78679 -23.65481 -22.64059 -21.93706 -21.10313 -20.37876 -19.88702 -19.26499 -17.78319 -17.28704 -16.70750 -16.53559 -15.99268 -15.91595 -15.00221 -14.80264 -14.53264 -14.18050 -14.03453 -13.80657 -13.67636 -13.63092 -13.40785 -13.18948 -13.01701 -12.95804 -12.67955 -12.32131 -12.11697 -12.08837 -11.77123 -11.32544 -11.11493 -10.96285 -10.93734 -10.85109 -10.78649 -10.76720 -10.58904 -10.46893 -10.35249 -10.19908 -9.78706 -9.67121 -9.50912 -8.95294 -8.61408 -8.52095 -7.92873 -7.02069 -5.81099 -3.10966 1.51999 1.72709 2.90713 3.32094 3.38589 3.44455 3.46041 3.48038 4.05293 4.51997 4.52899 4.67826 4.74533 4.94103 5.03329 5.10461 5.12059 5.20690 5.28461 5.32278 5.41555 5.45791 5.49410 5.52618 5.63047 5.67735 5.69308 5.79190 5.81526 5.86354 5.93113 5.94569 5.98909 6.06617 6.08941 6.27261 6.29483 6.42906 6.45327 6.48392 6.54464 6.57092 6.78216 6.83284 6.87704 6.95609 7.04838 7.06516 7.58110 7.64659 7.87535 8.35432 8.54947 9.47749 10.03082 10.39057 11.39994 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008394 B = 0.004933 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.082296 B = 5675.242761 C = 8559.219602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.139 3.861 17 H 0.085 0.915 18 N -0.708 5.708 19 C 0.528 3.472 20 O -0.541 6.541 21 C -0.061 4.061 22 H 0.097 0.903 23 C -0.145 4.145 24 C 0.065 3.935 25 O -0.319 6.319 26 C 0.131 3.869 27 C -0.157 4.157 28 C -0.089 4.089 29 C -0.132 4.132 30 C -0.068 4.068 31 C -0.156 4.156 32 H 0.255 0.745 33 H 0.385 0.615 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.403 0.597 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.126 0.874 48 H 0.125 0.875 49 H 0.134 0.866 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -11.107 9.908 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.034 3.966 17 H 0.103 0.897 18 N -0.357 5.357 19 C 0.313 3.687 20 O -0.418 6.418 21 C -0.082 4.082 22 H 0.115 0.885 23 C -0.183 4.183 24 C -0.010 4.010 25 O -0.233 6.233 26 C 0.086 3.914 27 C -0.176 4.176 28 C -0.107 4.107 29 C -0.151 4.151 30 C -0.086 4.086 31 C -0.157 4.157 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.237 0.763 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.126 0.874 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.152 0.848 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.179 -11.480 9.562 14.942 hybrid contribution 0.740 1.308 -0.042 1.504 sum 0.562 -10.172 9.520 13.944 Atomic orbital electron populations 1.69668 1.04880 1.25529 1.57175 1.24685 0.95432 0.97375 1.02839 0.86292 0.78695 0.84264 0.77486 1.21862 1.21840 1.20917 1.19171 0.90863 0.83973 1.43243 0.91336 1.42415 1.05785 0.99427 1.88561 1.20454 0.93884 0.85826 0.93560 0.93193 1.22218 0.99931 0.95493 0.99749 1.21579 0.98498 0.95716 0.99945 1.21468 0.99923 0.98015 0.95770 1.21875 0.99951 0.97183 0.97197 1.21328 0.99035 0.93966 0.82302 0.89730 1.46012 1.25208 1.48850 1.15621 1.20117 0.80825 0.79298 0.88470 1.90665 1.47331 1.39865 1.63981 1.20120 0.99052 0.94400 0.94617 0.88545 1.22137 1.02337 0.96769 0.97051 1.22922 0.90585 0.91169 0.96339 1.85956 1.40601 1.33087 1.63658 1.18561 0.94532 0.87389 0.90899 1.20480 1.01754 0.91974 1.03364 1.20994 0.97326 0.97384 0.94981 1.21231 0.95228 0.99382 0.99217 1.21285 0.99381 0.91615 0.96290 1.19338 0.99092 0.96417 1.00879 0.93548 0.78112 0.92479 0.91617 0.92409 0.92703 0.92416 0.91986 0.92024 0.92141 0.76253 0.88821 0.89744 0.91882 0.87440 0.85653 0.85673 0.84770 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.85 13.06 55.49 0.72 -25.13 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 8 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 9 N -0.72 -16.38 4.95 -53.43 -0.26 -16.65 16 10 C 0.17 3.13 2.29 -67.93 -0.16 2.97 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.13 -2.24 5.50 -26.73 -0.15 -2.39 16 13 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 15 C -0.12 -1.68 5.50 -26.70 -0.15 -1.82 16 16 C 0.14 2.28 2.02 -67.90 -0.14 2.14 16 17 H 0.08 1.63 7.51 -51.93 -0.39 1.24 16 18 N -0.71 -11.09 4.19 -53.78 -0.23 -11.32 16 19 C 0.53 8.71 5.77 -10.99 -0.06 8.65 16 20 O -0.54 -10.78 15.69 5.55 0.09 -10.69 16 21 C -0.06 -0.84 2.70 -92.86 -0.25 -1.09 16 22 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 23 C -0.15 -1.73 5.34 -26.50 -0.14 -1.87 16 24 C 0.07 0.68 7.03 37.36 0.26 0.94 16 25 O -0.32 -4.46 10.27 -19.25 -0.20 -4.65 16 26 C 0.13 2.03 6.47 -39.19 -0.25 1.78 16 27 C -0.16 -2.30 9.94 -39.34 -0.39 -2.69 16 28 C -0.09 -1.32 10.04 -39.66 -0.40 -1.72 16 29 C -0.13 -2.31 10.04 -39.61 -0.40 -2.71 16 30 C -0.07 -1.22 9.10 -39.53 -0.36 -1.58 16 31 C -0.16 -2.51 5.43 -104.44 -0.57 -3.08 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.38 9.71 7.80 -40.82 -0.32 9.40 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.40 5.98 8.54 -40.82 -0.35 5.63 16 43 H 0.09 1.34 7.46 -51.93 -0.39 0.95 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 48 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 49 H 0.13 2.50 8.06 -52.49 -0.42 2.07 16 50 H 0.14 2.76 6.74 -52.49 -0.35 2.41 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -29.82 397.61 -10.72 -40.54 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -8.10 Total: 17.98 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.71 Total: -12.36 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.23 Total: -53.10 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.11 Total: -15.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.82 -10.72 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085364960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.717 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds