Wall clock time and date at job start Wed Apr 1 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99852 * 2 1 4 4 H 1.48499 * 109.46742 * 269.99540 * 3 2 1 5 5 H 1.48498 * 109.47120 * 29.99630 * 3 2 1 6 6 H 1.48498 * 109.47171 * 150.00038 * 3 2 1 7 7 C 1.38811 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00261 * 359.72847 * 7 2 1 10 10 C 1.46494 * 120.00141 * 180.26984 * 9 7 2 11 11 H 1.09000 * 109.47189 * 35.00723 * 10 9 7 12 12 C 1.52998 * 109.47560 * 274.99982 * 10 9 7 13 13 C 1.53004 * 109.47542 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46798 * 59.99897 * 13 12 10 15 15 C 1.52998 * 109.47158 * 300.00338 * 14 13 12 16 16 C 1.53002 * 109.46838 * 155.00233 * 10 9 7 17 17 H 1.08996 * 109.47531 * 60.00343 * 16 10 9 18 18 N 1.46502 * 109.47272 * 299.99840 * 16 10 9 19 19 C 1.34769 * 120.00248 * 154.99878 * 18 16 10 20 20 O 1.21287 * 119.99907 * 354.90430 * 19 18 16 21 21 C 1.50699 * 120.00549 * 174.89892 * 19 18 16 22 22 H 1.09000 * 109.43168 * 335.31863 * 21 19 18 23 23 C 1.53068 * 109.44318 * 215.40552 * 21 19 18 24 24 C 1.53385 * 108.31588 * 191.69933 * 23 21 19 25 25 O 1.42827 * 108.33635 * 64.77043 * 24 23 21 26 26 C 1.35845 * 117.85590 * 310.78341 * 25 24 23 27 27 C 1.39148 * 118.49045 * 196.97689 * 26 25 24 28 28 C 1.37969 * 120.21034 * 180.44019 * 27 26 25 29 29 C 1.38290 * 119.95752 * 359.95462 * 28 27 26 30 30 C 1.38103 * 119.98732 * 359.93824 * 29 28 27 31 31 C 1.38373 * 121.80785 * 17.25285 * 26 25 24 32 32 H 0.97001 * 119.99891 * 0.02562 * 1 2 3 33 33 H 0.97006 * 119.99895 * 0.27790 * 9 7 2 34 34 H 1.08995 * 109.47055 * 300.00424 * 12 10 9 35 35 H 1.09005 * 109.46913 * 59.99939 * 12 10 9 36 36 H 1.09001 * 109.46694 * 300.00585 * 13 12 10 37 37 H 1.08995 * 109.47207 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46547 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.46561 * 60.00449 * 14 13 12 40 40 H 1.08995 * 109.47055 * 299.99693 * 15 14 13 41 41 H 1.09005 * 109.46913 * 180.02562 * 15 14 13 42 42 H 0.96999 * 119.99926 * 335.00672 * 18 16 10 43 43 H 1.09000 * 109.69788 * 311.44707 * 23 21 19 44 44 H 1.09004 * 109.69255 * 72.03326 * 23 21 19 45 45 H 1.09004 * 109.70982 * 305.05314 * 24 23 21 46 46 H 1.08999 * 109.72081 * 184.49451 * 24 23 21 47 47 H 1.08000 * 119.89492 * 0.43649 * 27 26 25 48 48 H 1.07999 * 120.02288 * 179.97438 * 28 27 26 49 49 H 1.08001 * 120.00800 * 179.91193 * 29 28 27 50 50 H 1.08001 * 119.84102 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0067 10 6 2.0582 -3.6567 0.0132 11 1 2.9688 -3.5474 0.6022 12 6 2.4221 -4.0430 -1.4218 13 6 3.1877 -5.3677 -1.4149 14 6 2.3110 -6.4602 -0.7993 15 6 1.9471 -6.0738 0.6357 16 6 1.1810 -4.7489 0.6285 17 1 0.2703 -4.8582 0.0396 18 7 0.8325 -4.3791 2.0026 19 6 -0.2854 -4.8729 2.5705 20 8 -1.0508 -5.5484 1.9155 21 6 -0.5847 -4.5860 4.0193 22 1 0.3453 -4.3729 4.5464 23 6 -1.2602 -5.8056 4.6513 24 6 -1.8155 -5.3935 6.0204 25 8 -2.8408 -4.4206 5.8151 26 6 -2.5644 -3.3694 5.0003 27 6 -3.3847 -2.2472 5.0631 28 6 -3.1418 -1.1630 4.2451 29 6 -2.0795 -1.1899 3.3601 30 6 -1.2620 -2.3012 3.2966 31 6 -1.5007 -3.3924 4.1156 32 1 -0.4850 0.8401 -0.0004 33 1 0.3556 -2.3881 0.0066 34 1 1.5114 -4.1523 -2.0106 35 1 3.0470 -3.2649 -1.8601 36 1 4.0984 -5.2579 -0.8260 37 1 3.4473 -5.6426 -2.4371 38 1 2.8563 -7.4039 -0.7948 39 1 1.4003 -6.5699 -1.3881 40 1 2.8578 -5.9641 1.2245 41 1 1.3229 -6.8524 1.0744 42 1 1.4064 -3.7787 2.5036 43 1 -2.0741 -6.1472 4.0118 44 1 -0.5306 -6.6056 4.7771 45 1 -1.0178 -4.9640 6.6265 46 1 -2.2320 -6.2648 6.5258 47 1 -4.2142 -2.2248 5.7544 48 1 -3.7807 -0.2937 4.2961 49 1 -1.8895 -0.3423 2.7184 50 1 -0.4328 -2.3195 2.6049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085364960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:55 Heat of formation + Delta-G solvation = -73.717685 kcal Electronic energy + Delta-G solvation = -31705.854508 eV Core-core repulsion = 27696.548479 eV Total energy + Delta-G solvation = -4009.306029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.10335 -40.74977 -39.18874 -38.42818 -35.79824 -35.29720 -35.03905 -32.96481 -31.65035 -31.14810 -30.65196 -29.38940 -27.26949 -25.59863 -24.76078 -23.88067 -23.22020 -22.49740 -21.65386 -21.09556 -20.51092 -19.14138 -18.91809 -18.03329 -17.69458 -17.29240 -17.09853 -16.63871 -15.96354 -15.82130 -15.71165 -15.37920 -15.19398 -14.99386 -14.81629 -14.63787 -14.57016 -14.35531 -14.17776 -13.98798 -13.62204 -13.52402 -13.34822 -12.91790 -12.89044 -12.80373 -12.46704 -12.24932 -12.17377 -12.07772 -12.02606 -11.97209 -11.80815 -11.64694 -11.59677 -11.43614 -11.11962 -10.97485 -10.72252 -9.95973 -9.77423 -9.13834 -8.95368 -7.86445 -5.15332 0.28990 0.45638 1.48105 1.49319 1.56328 1.59046 2.16694 2.37760 2.58097 2.79751 3.44263 3.47547 3.60267 3.67871 3.73531 3.80930 3.88471 4.11849 4.14898 4.17920 4.23449 4.26818 4.33099 4.40199 4.43884 4.49729 4.52537 4.53967 4.55940 4.59552 4.68394 4.70036 4.90992 4.94935 5.00464 5.04666 5.10803 5.17336 5.23950 5.29000 5.30023 5.31501 5.46299 5.48132 5.53977 5.59026 5.68051 5.68375 5.81874 6.31693 6.46371 6.56802 7.24102 7.39253 8.11675 8.36848 9.35059 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008394 B = 0.004933 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.082296 B = 5675.242761 C = 8559.219602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.063 4.063 3 Si 0.959 3.041 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.729 5.729 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.113 4.113 16 C 0.146 3.854 17 H 0.048 0.952 18 N -0.702 5.702 19 C 0.526 3.474 20 O -0.581 6.581 21 C -0.059 4.059 22 H 0.124 0.876 23 C -0.140 4.140 24 C 0.061 3.939 25 O -0.325 6.325 26 C 0.129 3.871 27 C -0.156 4.156 28 C -0.082 4.082 29 C -0.157 4.157 30 C -0.088 4.088 31 C -0.163 4.163 32 H 0.247 0.753 33 H 0.368 0.632 34 H 0.037 0.963 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.407 0.593 43 H 0.065 0.935 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.141 0.859 47 H 0.154 0.846 48 H 0.153 0.847 49 H 0.109 0.891 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 -13.014 12.030 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.257 4.257 3 Si 0.790 3.210 4 H -0.223 1.223 5 H -0.228 1.228 6 H -0.195 1.195 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.368 5.368 10 C 0.064 3.936 11 H 0.077 0.923 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.041 3.959 17 H 0.067 0.933 18 N -0.351 5.351 19 C 0.313 3.687 20 O -0.461 6.461 21 C -0.080 4.080 22 H 0.142 0.858 23 C -0.178 4.178 24 C -0.013 4.013 25 O -0.239 6.239 26 C 0.084 3.916 27 C -0.175 4.175 28 C -0.100 4.100 29 C -0.176 4.176 30 C -0.107 4.107 31 C -0.164 4.164 32 H 0.056 0.944 33 H 0.200 0.800 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.243 0.757 43 H 0.084 0.916 44 H 0.131 0.869 45 H 0.102 0.898 46 H 0.159 0.841 47 H 0.171 0.829 48 H 0.170 0.830 49 H 0.128 0.872 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.335 -13.420 11.690 17.848 hybrid contribution 0.287 1.834 -0.714 1.989 sum 1.622 -11.586 10.976 16.042 Atomic orbital electron populations 1.69826 1.06209 1.25436 1.59262 1.25342 0.96079 1.00204 1.04034 0.85359 0.77941 0.80776 0.76939 1.22327 1.22781 1.19485 1.19485 0.91191 0.84845 1.40918 0.90659 1.42547 1.05075 1.00631 1.88581 1.20654 0.93863 0.84405 0.94689 0.92312 1.22095 0.99351 0.97475 0.97990 1.21513 0.98401 0.93345 1.01488 1.21475 0.99730 0.99084 0.94574 1.21809 1.00121 0.94837 0.98435 1.21185 0.97488 0.95094 0.82133 0.93323 1.46003 1.25247 1.48574 1.15259 1.20606 0.80139 0.78387 0.89535 1.90642 1.48425 1.41795 1.65214 1.20227 1.00108 0.94673 0.92946 0.85826 1.22142 1.02023 0.96425 0.97210 1.23294 0.90791 0.91555 0.95665 1.85955 1.42054 1.33005 1.62889 1.18733 0.93938 0.88148 0.90785 1.20840 1.02083 0.91348 1.03199 1.21221 0.96395 0.98620 0.93793 1.21161 0.97018 0.98871 1.00501 1.21128 0.99375 0.93038 0.97116 1.19463 0.99934 0.96346 1.00678 0.94429 0.80041 0.94390 0.93241 0.90842 0.91029 0.89349 0.93117 0.89984 0.92335 0.75702 0.91598 0.86867 0.89772 0.84087 0.82867 0.82969 0.87235 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.26 13.06 21.65 0.28 -55.98 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.96 44.87 29.55 68.60 2.03 46.89 16 4 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.23 -12.06 9.93 84.03 0.83 -11.23 16 8 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.73 -34.50 4.95 -322.95 -1.60 -36.10 16 10 C 0.17 6.30 2.29 44.99 0.10 6.41 16 11 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 12 C -0.13 -4.33 5.50 30.59 0.17 -4.16 16 13 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 14 C -0.11 -2.55 5.92 30.60 0.18 -2.37 16 15 C -0.11 -2.90 5.50 30.61 0.17 -2.73 16 16 C 0.15 4.88 2.02 45.01 0.09 4.97 16 17 H 0.05 1.99 7.51 -2.39 -0.02 1.97 16 18 N -0.70 -22.42 4.19 -442.45 -1.85 -24.28 16 19 C 0.53 17.69 5.77 87.66 0.51 18.20 16 20 O -0.58 -23.93 15.69 -3.05 -0.05 -23.98 16 21 C -0.06 -1.58 2.70 -12.24 -0.03 -1.62 16 22 H 0.12 2.62 8.13 -2.39 -0.02 2.60 16 23 C -0.14 -3.05 5.34 30.75 0.16 -2.88 16 24 C 0.06 1.06 7.03 72.11 0.51 1.57 16 25 O -0.32 -8.27 10.27 -91.81 -0.94 -9.21 16 26 C 0.13 3.86 6.47 22.52 0.15 4.01 16 27 C -0.16 -4.36 9.94 22.42 0.22 -4.13 16 28 C -0.08 -2.45 10.04 22.22 0.22 -2.23 16 29 C -0.16 -5.84 10.04 22.25 0.22 -5.62 16 30 C -0.09 -3.36 9.10 22.30 0.20 -3.16 16 31 C -0.16 -5.27 5.43 -19.75 -0.11 -5.37 16 32 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.37 19.81 7.80 -92.70 -0.72 19.08 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.41 12.23 8.54 -92.71 -0.79 11.43 16 43 H 0.07 1.84 7.46 -2.39 -0.02 1.82 16 44 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 46 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 48 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 49 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 50 H 0.11 4.81 6.74 -2.91 -0.02 4.79 16 Total: -1.00 -68.77 397.61 1.55 -67.22 By element: Atomic # 1 Polarization: 51.81 SS G_CDS: -0.57 Total: 51.25 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 4.25 Total: -15.81 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -3.17 Total: -116.35 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.99 Total: -33.19 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -68.77 1.55 -67.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085364960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.497 kcal (2) G-P(sol) polarization free energy of solvation -68.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds