Wall clock time and date at job start Wed Apr 1 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48498 * 109.47279 * 270.00612 * 3 2 1 5 5 H 1.48507 * 109.47134 * 30.00524 * 3 2 1 6 6 H 1.48503 * 109.47058 * 150.00686 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99603 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00117 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46549 * 35.00267 * 10 9 7 12 12 C 1.52998 * 109.47249 * 275.00478 * 10 9 7 13 13 C 1.52994 * 109.47180 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47431 * 60.00133 * 13 12 10 15 15 C 1.53008 * 109.46899 * 300.00071 * 14 13 12 16 16 C 1.52998 * 109.46874 * 155.00363 * 10 9 7 17 17 H 1.08998 * 109.47200 * 60.00229 * 16 10 9 18 18 N 1.46493 * 109.47312 * 299.99794 * 16 10 9 19 19 C 1.34773 * 119.99985 * 155.00060 * 18 16 10 20 20 O 1.21281 * 120.00231 * 0.02562 * 19 18 16 21 21 C 1.50707 * 120.00295 * 180.02562 * 19 18 16 22 22 C 1.53001 * 109.47368 * 180.02562 * 21 19 18 23 23 H 1.09002 * 110.12881 * 304.75800 * 22 21 19 24 24 O 1.43941 * 110.15120 * 66.45010 * 22 21 19 25 25 C 1.43945 * 104.94633 * 147.56932 * 24 22 21 26 26 C 1.51086 * 105.95802 * 331.55503 * 25 24 22 27 27 C 1.37964 * 132.69354 * 197.64637 * 26 25 24 28 28 C 1.38291 * 119.92347 * 180.02562 * 27 26 25 29 29 C 1.38261 * 120.04002 * 359.97438 * 28 27 26 30 30 C 1.38295 * 120.04313 * 359.97438 * 29 28 27 31 31 C 1.37978 * 119.91695 * 0.02562 * 30 29 28 32 32 H 0.96996 * 120.00303 * 359.97438 * 1 2 3 33 33 H 0.97007 * 120.00123 * 0.02562 * 9 7 2 34 34 H 1.09003 * 109.47154 * 59.99611 * 12 10 9 35 35 H 1.08998 * 109.47112 * 299.99947 * 12 10 9 36 36 H 1.08998 * 109.47164 * 300.00049 * 13 12 10 37 37 H 1.09001 * 109.46909 * 180.02562 * 13 12 10 38 38 H 1.08993 * 109.47249 * 180.02562 * 14 13 12 39 39 H 1.09007 * 109.47011 * 59.99636 * 14 13 12 40 40 H 1.08998 * 109.47085 * 299.99711 * 15 14 13 41 41 H 1.08993 * 109.46941 * 179.97438 * 15 14 13 42 42 H 0.97000 * 120.00101 * 335.00436 * 18 16 10 43 43 H 1.08998 * 109.47158 * 59.99975 * 21 19 18 44 44 H 1.08994 * 109.46528 * 299.99977 * 21 19 18 45 45 H 1.09004 * 110.15503 * 212.43878 * 25 24 22 46 46 H 1.09001 * 110.21552 * 90.70876 * 25 24 22 47 47 H 1.08007 * 120.03502 * 0.06159 * 27 26 25 48 48 H 1.08000 * 119.98481 * 179.97438 * 28 27 26 49 49 H 1.08002 * 119.98245 * 180.02562 * 29 28 27 50 50 H 1.07995 * 120.04395 * 179.74846 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9688 -3.5505 0.5890 12 6 2.4221 -4.0356 -1.4375 13 6 3.1877 -5.3602 -1.4374 14 6 2.3110 -6.4559 -0.8277 15 6 1.9470 -6.0772 0.6093 16 6 1.1809 -4.7521 0.6090 17 1 0.2703 -4.8584 0.0195 18 7 0.8324 -4.3895 1.9849 19 6 -0.2856 -4.8863 2.5502 20 8 -1.0030 -5.6340 1.9199 21 6 -0.6445 -4.5129 3.9654 22 6 -1.9491 -5.2074 4.3611 23 1 -2.7348 -4.9655 3.6454 24 8 -1.7540 -6.6323 4.4206 25 6 -2.6397 -7.0852 5.4609 26 6 -2.7813 -5.9262 6.4197 27 6 -3.2204 -5.8399 7.7247 28 6 -3.2413 -4.6148 8.3660 29 6 -2.8222 -3.4779 7.7003 30 6 -2.3810 -3.5644 6.3924 31 6 -2.3601 -4.7866 5.7526 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 3.0471 -3.2552 -1.8718 35 1 1.5115 -4.1418 -2.0270 36 1 4.0983 -5.2536 -0.8480 37 1 3.4474 -5.6298 -2.4612 38 1 2.8566 -7.3995 -0.8273 39 1 1.4003 -6.5626 -1.4172 40 1 2.8576 -5.9705 1.1987 41 1 1.3221 -6.8575 1.0435 42 1 1.4063 -3.7917 2.4891 43 1 -0.7720 -3.4326 4.0349 44 1 0.1532 -4.8286 4.6378 45 1 -2.2088 -7.9456 5.9729 46 1 -3.6113 -7.3462 5.0412 47 1 -3.5469 -6.7282 8.2451 48 1 -3.5853 -4.5461 9.3875 49 1 -2.8385 -2.5217 8.2021 50 1 -2.0574 -2.6757 5.8711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085408731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:17 Heat of formation + Delta-G solvation = -52.092374 kcal Electronic energy + Delta-G solvation = -30348.658274 eV Core-core repulsion = 26340.289989 eV Total energy + Delta-G solvation = -4008.368285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96532 -39.52378 -37.87563 -37.25766 -34.02024 -33.60439 -32.74029 -31.42970 -31.13142 -30.39521 -29.07992 -27.68115 -26.16514 -24.37419 -23.70269 -22.27443 -21.72835 -21.10436 -20.89508 -19.92981 -19.29795 -17.38713 -17.11397 -16.66008 -16.34000 -15.94545 -15.72323 -15.52903 -14.94830 -14.80683 -14.27833 -14.06740 -13.84599 -13.73304 -13.62386 -13.46930 -13.08151 -12.98463 -12.92848 -12.58997 -12.36955 -12.25443 -12.08474 -12.01093 -11.66359 -11.38279 -11.07841 -11.05261 -10.91578 -10.78586 -10.72146 -10.52202 -10.29519 -10.16674 -10.06736 -9.73034 -9.61692 -9.38450 -9.10735 -8.91588 -8.74615 -8.46567 -6.98699 -5.78962 -3.08326 1.01058 1.10965 3.10783 3.40175 3.42967 3.45851 3.47279 3.61298 3.82308 4.03323 4.46756 4.54879 4.69182 4.77890 4.95020 5.09098 5.12215 5.14274 5.19126 5.21860 5.28777 5.33814 5.36572 5.41928 5.53798 5.58060 5.63474 5.72324 5.76126 5.80554 5.87485 5.87740 5.94054 6.00309 6.02930 6.13458 6.15562 6.20514 6.23541 6.39364 6.49313 6.53595 6.56896 6.62053 6.64524 6.75748 6.89923 6.97060 7.14492 7.66743 8.02689 8.38432 8.71879 9.50166 10.07231 10.42741 11.43003 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009613 B = 0.003125 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.159693 B = 8959.127829 C =11476.481708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.143 3.857 17 H 0.083 0.917 18 N -0.710 5.710 19 C 0.517 3.483 20 O -0.540 6.540 21 C -0.138 4.138 22 C 0.140 3.860 23 H 0.094 0.906 24 O -0.339 6.339 25 C 0.087 3.913 26 C -0.131 4.131 27 C -0.098 4.098 28 C -0.118 4.118 29 C -0.116 4.116 30 C -0.090 4.090 31 C -0.122 4.122 32 H 0.255 0.745 33 H 0.385 0.615 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.402 0.598 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.128 0.872 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -12.888 14.110 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.037 3.963 17 H 0.101 0.899 18 N -0.359 5.359 19 C 0.303 3.697 20 O -0.417 6.417 21 C -0.179 4.179 22 C 0.082 3.918 23 H 0.112 0.888 24 O -0.257 6.257 25 C 0.011 3.989 26 C -0.131 4.131 27 C -0.116 4.116 28 C -0.136 4.136 29 C -0.134 4.134 30 C -0.108 4.108 31 C -0.123 4.123 32 H 0.064 0.936 33 H 0.219 0.781 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.236 0.764 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.146 0.854 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.961 -13.388 13.535 19.267 hybrid contribution 0.279 1.518 0.352 1.583 sum -2.682 -11.870 13.887 18.465 Atomic orbital electron populations 1.69673 1.05052 1.25579 1.57483 1.24725 0.95441 0.97564 1.03020 0.86241 0.78625 0.84067 0.77522 1.21807 1.21874 1.20818 1.19207 0.90900 0.84039 1.42861 0.91247 1.42417 1.05808 0.99475 1.88512 1.20467 0.93937 0.85823 0.93543 0.93242 1.22215 0.99915 0.95507 0.99758 1.21578 0.98517 0.95722 0.99915 1.21473 0.99858 0.97947 0.95904 1.21878 0.99953 0.97449 0.96997 1.21259 0.98852 0.93825 0.82349 0.89929 1.45886 1.25370 1.49363 1.15312 1.20275 0.80904 0.80336 0.88214 1.90688 1.50748 1.36109 1.64176 1.21811 0.98203 1.02450 0.95389 1.21044 0.97065 0.81584 0.92090 0.88832 1.89243 1.62465 1.19532 1.54483 1.21760 0.95266 0.94978 0.86921 1.21129 1.00235 0.96497 0.95220 1.20379 1.00124 0.98112 0.92945 1.21133 1.00070 0.92376 0.99998 1.21168 0.98917 0.98805 0.94503 1.20539 0.99118 0.96500 0.94630 1.21081 1.00458 0.94425 0.96298 0.93554 0.78143 0.91684 0.92483 0.92434 0.92744 0.92466 0.92001 0.92171 0.91865 0.76399 0.87262 0.88370 0.88769 0.90607 0.85851 0.85598 0.85406 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -17.15 4.95 -53.43 -0.26 -17.41 16 10 C 0.17 3.27 2.29 -67.93 -0.16 3.12 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.13 -2.33 5.50 -26.74 -0.15 -2.48 16 13 C -0.12 -1.67 5.92 -26.74 -0.16 -1.83 16 14 C -0.11 -1.54 5.92 -26.73 -0.16 -1.70 16 15 C -0.12 -1.84 5.50 -26.70 -0.15 -1.98 16 16 C 0.14 2.47 1.98 -67.91 -0.13 2.33 16 17 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 18 N -0.71 -11.72 4.91 -53.78 -0.26 -11.98 16 19 C 0.52 8.79 7.70 -10.98 -0.08 8.70 16 20 O -0.54 -10.95 15.18 -6.38 -0.10 -11.05 16 21 C -0.14 -1.87 5.35 -27.88 -0.15 -2.02 16 22 C 0.14 1.93 2.86 -27.70 -0.08 1.85 16 23 H 0.09 1.41 7.98 -51.93 -0.41 0.99 16 24 O -0.34 -5.01 10.77 -47.16 -0.51 -5.52 16 25 C 0.09 0.97 7.63 36.19 0.28 1.24 16 26 C -0.13 -1.44 6.32 -104.40 -0.66 -2.10 16 27 C -0.10 -0.89 10.04 -39.66 -0.40 -1.29 16 28 C -0.12 -1.00 10.05 -39.55 -0.40 -1.39 16 29 C -0.12 -1.05 10.05 -39.55 -0.40 -1.45 16 30 C -0.09 -0.96 9.82 -39.66 -0.39 -1.35 16 31 C -0.12 -1.47 5.72 -104.40 -0.60 -2.07 16 32 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.38 10.10 7.80 -40.82 -0.32 9.79 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.40 6.22 8.60 -40.82 -0.35 5.86 16 43 H 0.11 1.34 7.93 -51.93 -0.41 0.93 16 44 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 48 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 49 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 50 H 0.13 1.24 7.93 -52.49 -0.42 0.83 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -32.05 403.59 -11.56 -43.61 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -8.19 Total: 15.39 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -4.02 Total: -9.26 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.20 Total: -56.00 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.60 Total: -16.57 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.05 -11.56 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085408731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.482 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds