Wall clock time and date at job start Wed Apr 1 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48498 * 109.47279 * 270.00612 * 3 2 1 5 5 H 1.48507 * 109.47134 * 30.00524 * 3 2 1 6 6 H 1.48503 * 109.47058 * 150.00686 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99603 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00117 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46549 * 35.00267 * 10 9 7 12 12 C 1.52998 * 109.47249 * 275.00478 * 10 9 7 13 13 C 1.52994 * 109.47180 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47431 * 60.00133 * 13 12 10 15 15 C 1.53008 * 109.46899 * 300.00071 * 14 13 12 16 16 C 1.52998 * 109.46874 * 155.00363 * 10 9 7 17 17 H 1.08998 * 109.47200 * 60.00229 * 16 10 9 18 18 N 1.46493 * 109.47312 * 299.99794 * 16 10 9 19 19 C 1.34773 * 119.99985 * 155.00060 * 18 16 10 20 20 O 1.21281 * 120.00231 * 0.02562 * 19 18 16 21 21 C 1.50707 * 120.00295 * 180.02562 * 19 18 16 22 22 C 1.53001 * 109.47368 * 180.02562 * 21 19 18 23 23 H 1.09002 * 110.12881 * 304.75800 * 22 21 19 24 24 O 1.43941 * 110.15120 * 66.45010 * 22 21 19 25 25 C 1.43945 * 104.94633 * 147.56932 * 24 22 21 26 26 C 1.51086 * 105.95802 * 331.55503 * 25 24 22 27 27 C 1.37964 * 132.69354 * 197.64637 * 26 25 24 28 28 C 1.38291 * 119.92347 * 180.02562 * 27 26 25 29 29 C 1.38261 * 120.04002 * 359.97438 * 28 27 26 30 30 C 1.38295 * 120.04313 * 359.97438 * 29 28 27 31 31 C 1.37978 * 119.91695 * 0.02562 * 30 29 28 32 32 H 0.96996 * 120.00303 * 359.97438 * 1 2 3 33 33 H 0.97007 * 120.00123 * 0.02562 * 9 7 2 34 34 H 1.09003 * 109.47154 * 59.99611 * 12 10 9 35 35 H 1.08998 * 109.47112 * 299.99947 * 12 10 9 36 36 H 1.08998 * 109.47164 * 300.00049 * 13 12 10 37 37 H 1.09001 * 109.46909 * 180.02562 * 13 12 10 38 38 H 1.08993 * 109.47249 * 180.02562 * 14 13 12 39 39 H 1.09007 * 109.47011 * 59.99636 * 14 13 12 40 40 H 1.08998 * 109.47085 * 299.99711 * 15 14 13 41 41 H 1.08993 * 109.46941 * 179.97438 * 15 14 13 42 42 H 0.97000 * 120.00101 * 335.00436 * 18 16 10 43 43 H 1.08998 * 109.47158 * 59.99975 * 21 19 18 44 44 H 1.08994 * 109.46528 * 299.99977 * 21 19 18 45 45 H 1.09004 * 110.15503 * 212.43878 * 25 24 22 46 46 H 1.09001 * 110.21552 * 90.70876 * 25 24 22 47 47 H 1.08007 * 120.03502 * 0.06159 * 27 26 25 48 48 H 1.08000 * 119.98481 * 179.97438 * 28 27 26 49 49 H 1.08002 * 119.98245 * 180.02562 * 29 28 27 50 50 H 1.07995 * 120.04395 * 179.74846 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9688 -3.5505 0.5890 12 6 2.4221 -4.0356 -1.4375 13 6 3.1877 -5.3602 -1.4374 14 6 2.3110 -6.4559 -0.8277 15 6 1.9470 -6.0772 0.6093 16 6 1.1809 -4.7521 0.6090 17 1 0.2703 -4.8584 0.0195 18 7 0.8324 -4.3895 1.9849 19 6 -0.2856 -4.8863 2.5502 20 8 -1.0030 -5.6340 1.9199 21 6 -0.6445 -4.5129 3.9654 22 6 -1.9491 -5.2074 4.3611 23 1 -2.7348 -4.9655 3.6454 24 8 -1.7540 -6.6323 4.4206 25 6 -2.6397 -7.0852 5.4609 26 6 -2.7813 -5.9262 6.4197 27 6 -3.2204 -5.8399 7.7247 28 6 -3.2413 -4.6148 8.3660 29 6 -2.8222 -3.4779 7.7003 30 6 -2.3810 -3.5644 6.3924 31 6 -2.3601 -4.7866 5.7526 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 3.0471 -3.2552 -1.8718 35 1 1.5115 -4.1418 -2.0270 36 1 4.0983 -5.2536 -0.8480 37 1 3.4474 -5.6298 -2.4612 38 1 2.8566 -7.3995 -0.8273 39 1 1.4003 -6.5626 -1.4172 40 1 2.8576 -5.9705 1.1987 41 1 1.3221 -6.8575 1.0435 42 1 1.4063 -3.7917 2.4891 43 1 -0.7720 -3.4326 4.0349 44 1 0.1532 -4.8286 4.6378 45 1 -2.2088 -7.9456 5.9729 46 1 -3.6113 -7.3462 5.0412 47 1 -3.5469 -6.7282 8.2451 48 1 -3.5853 -4.5461 9.3875 49 1 -2.8385 -2.5217 8.2021 50 1 -2.0574 -2.6757 5.8711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085408731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:16 Heat of formation + Delta-G solvation = -71.144419 kcal Electronic energy + Delta-G solvation = -30349.484433 eV Core-core repulsion = 26340.289989 eV Total energy + Delta-G solvation = -4009.194444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.89557 -40.87309 -39.19168 -38.21708 -35.80768 -35.03815 -33.73458 -32.98079 -32.24766 -31.37057 -30.35871 -29.25819 -27.13780 -25.64495 -25.24103 -23.50561 -22.56422 -22.48076 -21.96243 -21.28289 -20.64175 -19.15970 -18.36622 -17.67508 -17.53220 -17.09523 -16.85696 -16.56454 -16.35460 -16.02480 -15.62454 -15.46833 -15.15441 -14.96749 -14.70892 -14.61885 -14.60510 -14.14639 -13.92737 -13.76907 -13.65581 -13.54124 -13.24355 -13.09339 -12.91902 -12.80736 -12.70447 -12.24735 -12.21255 -12.15984 -12.02486 -11.99785 -11.81910 -11.63559 -11.43351 -11.11648 -11.04568 -10.97226 -10.68088 -9.89120 -9.85635 -9.56122 -8.98203 -7.89892 -5.18843 0.24902 0.37464 1.49092 1.50361 1.58275 1.74077 2.28117 2.57951 2.72317 2.86021 3.19691 3.43160 3.56654 3.69771 3.79666 3.82674 3.94496 4.04791 4.13511 4.20602 4.22342 4.27754 4.33523 4.41573 4.42618 4.45085 4.50222 4.53674 4.59740 4.62246 4.70832 4.77847 4.79158 4.88048 4.95609 5.02721 5.07719 5.18458 5.24434 5.29884 5.31455 5.39407 5.43173 5.47603 5.52920 5.54150 5.59127 5.71851 5.77933 5.99172 6.29732 6.66422 7.35629 7.36556 8.10082 8.34958 9.33114 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009613 B = 0.003125 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.159693 B = 8959.127829 C =11476.481708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.968 3.032 4 H -0.294 1.294 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.731 5.731 10 C 0.173 3.827 11 H 0.058 0.942 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.150 3.850 17 H 0.049 0.951 18 N -0.707 5.707 19 C 0.512 3.488 20 O -0.578 6.578 21 C -0.129 4.129 22 C 0.141 3.859 23 H 0.067 0.933 24 O -0.367 6.367 25 C 0.082 3.918 26 C -0.142 4.142 27 C -0.098 4.098 28 C -0.113 4.113 29 C -0.119 4.119 30 C -0.103 4.103 31 C -0.143 4.143 32 H 0.248 0.752 33 H 0.368 0.632 34 H 0.050 0.950 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.408 0.592 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.150 0.850 48 H 0.158 0.842 49 H 0.151 0.849 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -13.639 16.231 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.222 1.222 5 H -0.226 1.226 6 H -0.191 1.191 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.076 0.924 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.153 4.153 16 C 0.044 3.956 17 H 0.067 0.933 18 N -0.356 5.356 19 C 0.299 3.701 20 O -0.458 6.458 21 C -0.168 4.168 22 C 0.083 3.917 23 H 0.085 0.915 24 O -0.286 6.286 25 C 0.006 3.994 26 C -0.142 4.142 27 C -0.116 4.116 28 C -0.131 4.131 29 C -0.137 4.137 30 C -0.121 4.121 31 C -0.143 4.143 32 H 0.057 0.943 33 H 0.200 0.800 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.243 0.757 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.098 0.902 47 H 0.168 0.832 48 H 0.175 0.825 49 H 0.169 0.831 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.251 -14.169 15.663 21.158 hybrid contribution -0.259 1.683 -0.288 1.727 sum -1.510 -12.486 15.375 19.864 Atomic orbital electron populations 1.69841 1.06633 1.25707 1.59837 1.25472 0.96149 1.00784 1.04137 0.85220 0.77882 0.80026 0.77084 1.22163 1.22649 1.19095 1.19576 0.91364 0.84862 1.40406 0.90347 1.42577 1.05147 1.00715 1.88549 1.20657 0.93847 0.84321 0.94743 0.92356 1.22095 0.99448 0.97469 0.97927 1.21508 0.98348 0.93302 1.01538 1.21479 0.99785 0.99098 0.94496 1.21803 0.99937 0.95179 0.98395 1.21115 0.97413 0.94805 0.82281 0.93261 1.45900 1.25465 1.49283 1.14998 1.20887 0.80294 0.79559 0.89355 1.90662 1.51824 1.37903 1.65405 1.21798 0.98888 1.03007 0.93152 1.20892 0.96211 0.81572 0.93011 0.91543 1.89191 1.63414 1.20023 1.55976 1.21953 0.95173 0.95786 0.86510 1.21242 1.01022 0.95808 0.96124 1.20739 0.99172 0.99597 0.92095 1.21557 0.98619 0.91677 1.01254 1.21503 0.98077 1.00298 0.93804 1.20720 0.99688 0.96071 0.95605 1.20972 1.02379 0.95589 0.95401 0.94341 0.80040 0.93074 0.94222 0.90894 0.90843 0.89540 0.92999 0.90358 0.92856 0.75672 0.86289 0.86501 0.86782 0.90172 0.83227 0.82480 0.83143 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.57 13.06 21.65 0.28 -58.29 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.06 29.55 68.60 2.03 47.08 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.23 -12.16 9.93 84.03 0.83 -11.33 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.73 -35.47 4.95 -322.95 -1.60 -37.07 16 10 C 0.17 6.55 2.29 44.99 0.10 6.65 16 11 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 12 C -0.13 -4.47 5.50 30.59 0.17 -4.30 16 13 C -0.11 -2.79 5.92 30.59 0.18 -2.61 16 14 C -0.11 -2.77 5.92 30.60 0.18 -2.59 16 15 C -0.11 -3.26 5.50 30.62 0.17 -3.10 16 16 C 0.15 5.27 1.98 45.01 0.09 5.36 16 17 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 18 N -0.71 -23.85 4.91 -442.46 -2.17 -26.02 16 19 C 0.51 18.13 7.70 87.66 0.67 18.80 16 20 O -0.58 -24.82 15.18 8.38 0.13 -24.69 16 21 C -0.13 -3.59 5.35 29.85 0.16 -3.43 16 22 C 0.14 4.10 2.86 29.97 0.09 4.19 16 23 H 0.07 2.21 7.98 -2.39 -0.02 2.19 16 24 O -0.37 -11.26 10.77 -137.57 -1.48 -12.74 16 25 C 0.08 1.81 7.63 71.36 0.54 2.35 16 26 C -0.14 -3.02 6.32 -19.72 -0.12 -3.15 16 27 C -0.10 -1.55 10.04 22.22 0.22 -1.33 16 28 C -0.11 -1.58 10.05 22.29 0.22 -1.35 16 29 C -0.12 -1.91 10.05 22.29 0.22 -1.69 16 30 C -0.10 -2.13 9.82 22.22 0.22 -1.92 16 31 C -0.14 -3.46 5.72 -19.72 -0.11 -3.57 16 32 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.37 20.18 7.80 -92.70 -0.72 19.45 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.41 12.65 8.60 -92.71 -0.80 11.85 16 43 H 0.12 3.03 7.93 -2.39 -0.02 3.01 16 44 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 48 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 49 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 50 H 0.13 2.53 7.93 -2.91 -0.02 2.51 16 Total: -1.00 -71.60 403.59 0.92 -70.68 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -0.58 Total: 47.67 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.31 Total: -6.62 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -3.49 Total: -121.39 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.35 Total: -37.42 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.60 0.92 -70.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085408731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.465 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds