Wall clock time and date at job start Wed Apr 1 2020 02:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99796 * 2 1 4 4 H 1.48503 * 109.47013 * 269.99709 * 3 2 1 5 5 H 1.48496 * 109.47471 * 29.99557 * 3 2 1 6 6 H 1.48501 * 109.47098 * 149.99819 * 3 2 1 7 7 C 1.38810 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00207 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00049 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47121 * 34.99732 * 10 9 7 12 12 C 1.53002 * 109.46678 * 274.99689 * 10 9 7 13 13 C 1.53002 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47209 * 59.99977 * 13 12 10 15 15 C 1.52999 * 109.47202 * 300.00256 * 14 13 12 16 16 C 1.52998 * 109.47117 * 154.99998 * 10 9 7 17 17 H 1.08996 * 109.47343 * 59.99869 * 16 10 9 18 18 N 1.46499 * 109.47133 * 299.99560 * 16 10 9 19 19 C 1.34773 * 119.99978 * 155.00137 * 18 16 10 20 20 O 1.21277 * 120.00156 * 359.97438 * 19 18 16 21 21 C 1.50707 * 119.99942 * 179.97438 * 19 18 16 22 22 C 1.53003 * 109.47087 * 179.97438 * 21 19 18 23 23 H 1.08999 * 110.18209 * 55.28498 * 22 21 19 24 24 O 1.43945 * 110.15489 * 293.54836 * 22 21 19 25 25 C 1.43936 * 104.94577 * 212.43144 * 24 22 21 26 26 C 1.51084 * 105.96012 * 28.44390 * 25 24 22 27 27 C 1.37970 * 132.68810 * 162.31094 * 26 25 24 28 28 C 1.38300 * 119.91707 * 180.02562 * 27 26 25 29 29 C 1.38256 * 120.03931 * 359.91974 * 28 27 26 30 30 C 1.38299 * 120.04563 * 0.06197 * 29 28 27 31 31 C 1.37972 * 119.91793 * 359.97438 * 30 29 28 32 32 H 0.97005 * 120.00242 * 0.02562 * 1 2 3 33 33 H 0.96996 * 119.99545 * 0.02562 * 9 7 2 34 34 H 1.09003 * 109.47107 * 60.00672 * 12 10 9 35 35 H 1.08996 * 109.47379 * 299.99884 * 12 10 9 36 36 H 1.09004 * 109.47250 * 300.00252 * 13 12 10 37 37 H 1.08999 * 109.47150 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.47110 * 179.97438 * 14 13 12 39 39 H 1.09004 * 109.46790 * 59.99993 * 14 13 12 40 40 H 1.09004 * 109.47033 * 299.99588 * 15 14 13 41 41 H 1.09004 * 109.47252 * 179.97438 * 15 14 13 42 42 H 0.97005 * 119.99629 * 335.00058 * 18 16 10 43 43 H 1.08998 * 109.46681 * 60.00263 * 21 19 18 44 44 H 1.09002 * 109.47331 * 300.00230 * 21 19 18 45 45 H 1.08999 * 110.15310 * 147.56866 * 25 24 22 46 46 H 1.08998 * 110.15423 * 269.32374 * 25 24 22 47 47 H 1.08000 * 120.04199 * 359.97438 * 27 26 25 48 48 H 1.07994 * 119.97510 * 179.97438 * 28 27 26 49 49 H 1.08002 * 119.97666 * 180.02562 * 29 28 27 50 50 H 1.07997 * 120.04269 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9683 -3.5502 0.5917 12 6 2.4229 -4.0362 -1.4349 13 6 3.1885 -5.3609 -1.4338 14 6 2.3115 -6.4563 -0.8241 15 6 1.9465 -6.0769 0.6125 16 6 1.1804 -4.7519 0.6111 17 1 0.2702 -4.8584 0.0211 18 7 0.8310 -4.3886 1.9867 19 6 -0.2874 -4.8852 2.5514 20 8 -1.0048 -5.6325 1.9207 21 6 -0.6465 -4.5120 3.9667 22 6 -1.9521 -5.2052 4.3613 23 1 -1.8651 -6.2819 4.2159 24 8 -3.0448 -4.6861 3.5811 25 6 -4.1877 -4.7511 4.4536 26 6 -3.6458 -4.6244 5.8582 27 6 -4.2372 -4.3083 7.0640 28 6 -3.4739 -4.2663 8.2166 29 6 -2.1203 -4.5424 8.1607 30 6 -1.5276 -4.8596 6.9522 31 6 -2.2889 -4.9008 5.8022 32 1 -0.4851 0.8401 -0.0004 33 1 0.3556 -2.3880 -0.0002 34 1 3.0483 -3.2560 -1.8691 35 1 1.5127 -4.1427 -2.0250 36 1 4.0989 -5.2539 -0.8438 37 1 3.4481 -5.6314 -2.4573 38 1 2.8567 -7.4001 -0.8237 39 1 1.4012 -6.5632 -1.4141 40 1 2.8569 -5.9699 1.2025 41 1 1.3213 -6.8571 1.0467 42 1 1.4047 -3.7906 2.4909 43 1 -0.7737 -3.4317 4.0363 44 1 0.1509 -4.8280 4.6393 45 1 -4.8711 -3.9295 4.2392 46 1 -4.6984 -5.7065 4.3329 47 1 -5.2946 -4.0930 7.1077 48 1 -3.9357 -4.0185 9.1608 49 1 -1.5253 -4.5097 9.0615 50 1 -0.4702 -5.0749 6.9085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085408732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:21 Heat of formation + Delta-G solvation = -51.149160 kcal Electronic energy + Delta-G solvation = -30392.364224 eV Core-core repulsion = 26384.036839 eV Total energy + Delta-G solvation = -4008.327385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.94016 -39.52234 -37.86935 -37.23288 -34.00192 -33.59964 -32.73311 -31.40480 -31.11442 -30.39688 -29.08082 -27.66610 -26.13323 -24.36449 -23.68211 -22.26949 -21.72223 -21.10609 -20.89065 -19.92236 -19.29892 -17.36123 -17.10565 -16.64039 -16.31377 -15.94394 -15.69994 -15.52623 -14.93830 -14.76921 -14.28815 -14.04328 -13.89965 -13.74685 -13.59491 -13.33531 -13.15213 -12.96907 -12.92155 -12.57601 -12.40739 -12.16467 -12.07154 -12.02418 -11.66578 -11.35893 -11.06810 -11.04620 -10.89642 -10.78615 -10.72117 -10.52113 -10.29341 -10.14817 -10.01273 -9.71515 -9.60289 -9.38692 -9.10655 -8.89249 -8.72527 -8.46579 -6.95703 -5.75256 -3.05127 1.01835 1.10835 3.09925 3.42255 3.43043 3.47547 3.49588 3.62833 3.87219 4.04746 4.49437 4.57334 4.68995 4.77252 4.92845 5.07081 5.10760 5.17034 5.20483 5.23948 5.31131 5.35286 5.37856 5.42074 5.55420 5.57864 5.64036 5.67891 5.75965 5.80519 5.87218 5.92492 5.93750 6.00494 6.01966 6.13267 6.15209 6.20930 6.23028 6.36610 6.49005 6.52903 6.57049 6.62555 6.66065 6.80850 6.90388 6.97764 7.15158 7.69239 8.02922 8.41690 8.72073 9.53350 10.10687 10.45897 11.46517 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.003138 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.610800 B = 8921.884003 C =10922.121880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.049 0.951 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.142 3.858 17 H 0.083 0.917 18 N -0.710 5.710 19 C 0.517 3.483 20 O -0.540 6.540 21 C -0.139 4.139 22 C 0.141 3.859 23 H 0.090 0.910 24 O -0.334 6.334 25 C 0.086 3.914 26 C -0.127 4.127 27 C -0.096 4.096 28 C -0.117 4.117 29 C -0.118 4.118 30 C -0.092 4.092 31 C -0.124 4.124 32 H 0.255 0.745 33 H 0.385 0.615 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.402 0.598 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.127 0.873 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 -13.544 14.360 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.067 0.933 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.036 3.964 17 H 0.101 0.899 18 N -0.359 5.359 19 C 0.303 3.697 20 O -0.417 6.417 21 C -0.179 4.179 22 C 0.083 3.917 23 H 0.108 0.892 24 O -0.252 6.252 25 C 0.009 3.991 26 C -0.127 4.127 27 C -0.114 4.114 28 C -0.135 4.135 29 C -0.136 4.136 30 C -0.110 4.110 31 C -0.124 4.124 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.236 0.764 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.143 0.857 48 H 0.144 0.856 49 H 0.145 0.855 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.796 -13.825 13.691 19.657 hybrid contribution 0.402 1.360 0.431 1.482 sum -2.394 -12.466 14.122 18.988 Atomic orbital electron populations 1.69675 1.05054 1.25595 1.57234 1.24730 0.95416 0.97561 1.02958 0.86251 0.78614 0.84145 0.77501 1.21799 1.21876 1.20828 1.19194 0.90859 0.84048 1.43115 0.91270 1.42422 1.05853 0.99447 1.88493 1.20455 0.93887 0.85865 0.93519 0.93290 1.22226 0.99917 0.95477 0.99824 1.21579 0.98498 0.95731 0.99909 1.21472 0.99889 0.97943 0.95901 1.21875 0.99888 0.97392 0.97048 1.21268 0.98888 0.93794 0.82423 0.89881 1.45888 1.25299 1.49375 1.15354 1.20274 0.80597 0.80439 0.88412 1.90684 1.50214 1.36647 1.64172 1.21812 0.96896 1.03931 0.95307 1.21006 0.87549 0.98418 0.84735 0.89210 1.89318 1.16796 1.84950 1.34117 1.21791 0.90210 1.02429 0.84656 1.21161 0.95196 1.00145 0.96212 1.20412 1.00079 0.99957 0.90978 1.21132 0.94199 1.00126 0.98059 1.21134 0.95104 0.99803 0.97526 1.20446 0.99751 0.99715 0.91054 1.21104 0.94978 1.00412 0.95898 0.93519 0.78069 0.91677 0.92471 0.92434 0.92745 0.92479 0.91986 0.92154 0.92021 0.76407 0.87665 0.87963 0.88510 0.90614 0.85747 0.85581 0.85504 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.50 4.95 -53.43 -0.26 -17.76 16 10 C 0.17 3.31 2.29 -67.93 -0.16 3.16 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.13 -2.36 5.50 -26.73 -0.15 -2.50 16 13 C -0.12 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 15 C -0.12 -1.77 5.50 -26.70 -0.15 -1.92 16 16 C 0.14 2.46 1.98 -67.90 -0.13 2.32 16 17 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 18 N -0.71 -11.74 4.91 -53.78 -0.26 -12.00 16 19 C 0.52 8.80 7.70 -10.98 -0.08 8.72 16 20 O -0.54 -10.96 15.18 -6.37 -0.10 -11.06 16 21 C -0.14 -1.89 5.35 -27.88 -0.15 -2.04 16 22 C 0.14 1.95 2.85 -27.70 -0.08 1.87 16 23 H 0.09 1.24 7.98 -51.93 -0.41 0.83 16 24 O -0.33 -5.48 10.77 -47.16 -0.51 -5.99 16 25 C 0.09 1.06 7.63 36.19 0.28 1.33 16 26 C -0.13 -1.48 6.32 -104.40 -0.66 -2.14 16 27 C -0.10 -0.93 10.04 -39.66 -0.40 -1.33 16 28 C -0.12 -1.01 10.05 -39.55 -0.40 -1.40 16 29 C -0.12 -1.02 10.05 -39.55 -0.40 -1.42 16 30 C -0.09 -0.91 9.82 -39.66 -0.39 -1.30 16 31 C -0.12 -1.48 5.73 -104.41 -0.60 -2.08 16 32 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.39 10.41 7.80 -40.82 -0.32 10.09 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.40 6.23 8.60 -40.82 -0.35 5.88 16 43 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.10 1.02 7.94 -51.93 -0.41 0.61 16 45 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 49 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 50 H 0.13 0.99 7.93 -52.49 -0.42 0.57 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -33.11 403.60 -11.56 -44.67 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -8.19 Total: 15.40 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -4.02 Total: -9.20 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.20 Total: -56.98 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.60 Total: -17.05 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.11 -11.56 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085408732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.474 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds