Wall clock time and date at job start Wed Apr 1 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99796 * 2 1 4 4 H 1.48503 * 109.47013 * 269.99709 * 3 2 1 5 5 H 1.48496 * 109.47471 * 29.99557 * 3 2 1 6 6 H 1.48501 * 109.47098 * 149.99819 * 3 2 1 7 7 C 1.38810 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00207 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00049 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47121 * 34.99732 * 10 9 7 12 12 C 1.53002 * 109.46678 * 274.99689 * 10 9 7 13 13 C 1.53002 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47209 * 59.99977 * 13 12 10 15 15 C 1.52999 * 109.47202 * 300.00256 * 14 13 12 16 16 C 1.52998 * 109.47117 * 154.99998 * 10 9 7 17 17 H 1.08996 * 109.47343 * 59.99869 * 16 10 9 18 18 N 1.46499 * 109.47133 * 299.99560 * 16 10 9 19 19 C 1.34773 * 119.99978 * 155.00137 * 18 16 10 20 20 O 1.21277 * 120.00156 * 359.97438 * 19 18 16 21 21 C 1.50707 * 119.99942 * 179.97438 * 19 18 16 22 22 C 1.53003 * 109.47087 * 179.97438 * 21 19 18 23 23 H 1.08999 * 110.18209 * 55.28498 * 22 21 19 24 24 O 1.43945 * 110.15489 * 293.54836 * 22 21 19 25 25 C 1.43936 * 104.94577 * 212.43144 * 24 22 21 26 26 C 1.51084 * 105.96012 * 28.44390 * 25 24 22 27 27 C 1.37970 * 132.68810 * 162.31094 * 26 25 24 28 28 C 1.38300 * 119.91707 * 180.02562 * 27 26 25 29 29 C 1.38256 * 120.03931 * 359.91974 * 28 27 26 30 30 C 1.38299 * 120.04563 * 0.06197 * 29 28 27 31 31 C 1.37972 * 119.91793 * 359.97438 * 30 29 28 32 32 H 0.97005 * 120.00242 * 0.02562 * 1 2 3 33 33 H 0.96996 * 119.99545 * 0.02562 * 9 7 2 34 34 H 1.09003 * 109.47107 * 60.00672 * 12 10 9 35 35 H 1.08996 * 109.47379 * 299.99884 * 12 10 9 36 36 H 1.09004 * 109.47250 * 300.00252 * 13 12 10 37 37 H 1.08999 * 109.47150 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.47110 * 179.97438 * 14 13 12 39 39 H 1.09004 * 109.46790 * 59.99993 * 14 13 12 40 40 H 1.09004 * 109.47033 * 299.99588 * 15 14 13 41 41 H 1.09004 * 109.47252 * 179.97438 * 15 14 13 42 42 H 0.97005 * 119.99629 * 335.00058 * 18 16 10 43 43 H 1.08998 * 109.46681 * 60.00263 * 21 19 18 44 44 H 1.09002 * 109.47331 * 300.00230 * 21 19 18 45 45 H 1.08999 * 110.15310 * 147.56866 * 25 24 22 46 46 H 1.08998 * 110.15423 * 269.32374 * 25 24 22 47 47 H 1.08000 * 120.04199 * 359.97438 * 27 26 25 48 48 H 1.07994 * 119.97510 * 179.97438 * 28 27 26 49 49 H 1.08002 * 119.97666 * 180.02562 * 29 28 27 50 50 H 1.07997 * 120.04269 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9683 -3.5502 0.5917 12 6 2.4229 -4.0362 -1.4349 13 6 3.1885 -5.3609 -1.4338 14 6 2.3115 -6.4563 -0.8241 15 6 1.9465 -6.0769 0.6125 16 6 1.1804 -4.7519 0.6111 17 1 0.2702 -4.8584 0.0211 18 7 0.8310 -4.3886 1.9867 19 6 -0.2874 -4.8852 2.5514 20 8 -1.0048 -5.6325 1.9207 21 6 -0.6465 -4.5120 3.9667 22 6 -1.9521 -5.2052 4.3613 23 1 -1.8651 -6.2819 4.2159 24 8 -3.0448 -4.6861 3.5811 25 6 -4.1877 -4.7511 4.4536 26 6 -3.6458 -4.6244 5.8582 27 6 -4.2372 -4.3083 7.0640 28 6 -3.4739 -4.2663 8.2166 29 6 -2.1203 -4.5424 8.1607 30 6 -1.5276 -4.8596 6.9522 31 6 -2.2889 -4.9008 5.8022 32 1 -0.4851 0.8401 -0.0004 33 1 0.3556 -2.3880 -0.0002 34 1 3.0483 -3.2560 -1.8691 35 1 1.5127 -4.1427 -2.0250 36 1 4.0989 -5.2539 -0.8438 37 1 3.4481 -5.6314 -2.4573 38 1 2.8567 -7.4001 -0.8237 39 1 1.4012 -6.5632 -1.4141 40 1 2.8569 -5.9699 1.2025 41 1 1.3213 -6.8571 1.0467 42 1 1.4047 -3.7906 2.4909 43 1 -0.7737 -3.4317 4.0363 44 1 0.1509 -4.8280 4.6393 45 1 -4.8711 -3.9295 4.2392 46 1 -4.6984 -5.7065 4.3329 47 1 -5.2946 -4.0930 7.1077 48 1 -3.9357 -4.0185 9.1608 49 1 -1.5253 -4.5097 9.0615 50 1 -0.4702 -5.0749 6.9085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085408732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:20 Heat of formation + Delta-G solvation = -71.524991 kcal Electronic energy + Delta-G solvation = -30393.247786 eV Core-core repulsion = 26384.036839 eV Total energy + Delta-G solvation = -4009.210947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.88838 -40.86639 -39.18482 -38.21627 -35.80771 -35.03064 -33.73664 -32.98688 -32.24500 -31.36368 -30.35315 -29.25754 -27.14700 -25.65184 -25.23008 -23.49531 -22.57595 -22.47318 -21.95834 -21.26472 -20.64271 -19.15937 -18.35857 -17.69174 -17.49754 -17.11475 -16.86054 -16.52672 -16.40946 -15.98746 -15.62486 -15.46388 -15.19208 -14.98067 -14.66792 -14.61564 -14.57395 -14.11535 -13.99359 -13.76307 -13.65823 -13.49588 -13.23926 -13.09389 -12.92286 -12.80490 -12.70895 -12.24208 -12.20284 -12.15113 -12.02656 -11.99601 -11.81417 -11.63337 -11.43021 -11.11451 -11.03432 -10.97606 -10.67799 -9.88079 -9.84383 -9.55322 -8.98958 -7.90259 -5.19738 0.25944 0.38748 1.47954 1.49378 1.57545 1.74008 2.29978 2.57371 2.73558 2.88300 3.20478 3.42819 3.56857 3.70542 3.78590 3.83497 3.94850 4.05655 4.15889 4.21566 4.25262 4.28765 4.33346 4.38944 4.40997 4.45104 4.48611 4.53412 4.60210 4.62896 4.71121 4.76759 4.82368 4.88236 4.96289 5.02843 5.08935 5.19456 5.25088 5.30326 5.32092 5.41346 5.43591 5.47848 5.53246 5.53681 5.59372 5.72491 5.80996 6.00312 6.28920 6.67457 7.35324 7.36801 8.09725 8.34014 9.32854 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.003138 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.610800 B = 8921.884003 C =10922.121880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.293 1.293 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.732 5.732 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.113 4.113 16 C 0.149 3.851 17 H 0.045 0.955 18 N -0.707 5.707 19 C 0.511 3.489 20 O -0.578 6.578 21 C -0.130 4.130 22 C 0.140 3.860 23 H 0.081 0.919 24 O -0.377 6.377 25 C 0.080 3.920 26 C -0.147 4.147 27 C -0.103 4.103 28 C -0.116 4.116 29 C -0.118 4.118 30 C -0.097 4.097 31 C -0.142 4.142 32 H 0.247 0.753 33 H 0.367 0.633 34 H 0.050 0.950 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.408 0.592 43 H 0.095 0.905 44 H 0.142 0.858 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.143 0.857 48 H 0.156 0.844 49 H 0.157 0.843 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -14.367 16.697 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.228 1.228 6 H -0.189 1.189 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.371 5.371 10 C 0.064 3.936 11 H 0.078 0.922 12 C -0.170 4.170 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.043 3.957 17 H 0.064 0.936 18 N -0.356 5.356 19 C 0.299 3.701 20 O -0.458 6.458 21 C -0.169 4.169 22 C 0.082 3.918 23 H 0.099 0.901 24 O -0.296 6.296 25 C 0.004 3.996 26 C -0.147 4.147 27 C -0.121 4.121 28 C -0.134 4.134 29 C -0.135 4.135 30 C -0.115 4.115 31 C -0.142 4.142 32 H 0.056 0.944 33 H 0.198 0.802 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.243 0.757 43 H 0.113 0.887 44 H 0.160 0.840 45 H 0.119 0.881 46 H 0.102 0.898 47 H 0.161 0.839 48 H 0.173 0.827 49 H 0.174 0.826 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.423 -14.682 16.036 21.746 hybrid contribution -0.333 1.555 -0.285 1.616 sum -0.756 -13.127 15.751 20.518 Atomic orbital electron populations 1.69858 1.06791 1.25702 1.59836 1.25508 0.96109 1.00947 1.04129 0.85203 0.77886 0.79893 0.77146 1.22023 1.22809 1.18877 1.19598 0.91399 0.84853 1.40413 0.90166 1.42608 1.05114 1.00845 1.88547 1.20676 0.93884 0.84288 0.94770 0.92179 1.22103 0.99373 0.97575 0.97940 1.21511 0.98387 0.93227 1.01550 1.21484 0.99718 0.99113 0.94616 1.21801 1.00034 0.94959 0.98375 1.21125 0.97305 0.94975 0.82311 0.93626 1.45903 1.25432 1.49296 1.15006 1.20905 0.79945 0.79668 0.89613 1.90660 1.51263 1.38497 1.65401 1.21834 0.98280 1.03192 0.93622 1.20999 0.86925 0.97777 0.86078 0.90140 1.89256 1.18674 1.85305 1.36401 1.21929 0.89369 1.03130 0.85199 1.21218 0.95415 1.01714 0.96335 1.20725 1.01322 0.99470 0.90555 1.21557 0.94324 0.98723 0.98751 1.21550 0.95525 0.98427 0.98028 1.20763 1.00741 0.99265 0.90713 1.21028 0.95541 1.02353 0.95306 0.94396 0.80204 0.93143 0.94434 0.90736 0.90929 0.89349 0.93181 0.90017 0.92502 0.75674 0.88652 0.83999 0.88084 0.89760 0.83894 0.82653 0.82559 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.23 -12.41 9.93 84.03 0.83 -11.57 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -36.35 4.95 -322.95 -1.60 -37.95 16 10 C 0.17 6.57 2.29 44.99 0.10 6.68 16 11 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 12 C -0.13 -4.52 5.50 30.60 0.17 -4.35 16 13 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 14 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 15 C -0.11 -3.08 5.50 30.61 0.17 -2.91 16 16 C 0.15 5.22 1.98 45.01 0.09 5.31 16 17 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 18 N -0.71 -23.70 4.91 -442.46 -2.17 -25.88 16 19 C 0.51 17.99 7.70 87.66 0.67 18.67 16 20 O -0.58 -24.75 15.18 8.38 0.13 -24.62 16 21 C -0.13 -3.56 5.35 29.85 0.16 -3.40 16 22 C 0.14 4.02 2.85 29.97 0.09 4.11 16 23 H 0.08 2.37 7.98 -2.39 -0.02 2.35 16 24 O -0.38 -13.27 10.77 -137.58 -1.48 -14.75 16 25 C 0.08 2.08 7.63 71.36 0.54 2.63 16 26 C -0.15 -3.43 6.32 -19.72 -0.12 -3.55 16 27 C -0.10 -1.83 10.04 22.22 0.22 -1.61 16 28 C -0.12 -1.66 10.05 22.29 0.22 -1.43 16 29 C -0.12 -1.68 10.05 22.29 0.22 -1.46 16 30 C -0.10 -1.73 9.82 22.22 0.22 -1.51 16 31 C -0.14 -3.36 5.73 -19.72 -0.11 -3.47 16 32 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 33 H 0.37 20.78 7.80 -92.71 -0.72 20.06 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.41 12.54 8.60 -92.70 -0.80 11.75 16 43 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.14 2.63 7.94 -2.39 -0.02 2.61 16 45 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 48 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 49 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 50 H 0.15 1.88 7.93 -2.91 -0.02 1.86 16 Total: -1.00 -75.35 403.60 0.92 -74.43 By element: Atomic # 1 Polarization: 48.37 SS G_CDS: -0.58 Total: 47.80 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.31 Total: -6.77 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -3.49 Total: -123.97 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.35 Total: -39.37 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -75.35 0.92 -74.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085408732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.906 kcal (2) G-P(sol) polarization free energy of solvation -75.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds