Wall clock time and date at job start Wed Apr 1 2020 02:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00252 * 2 1 4 4 H 1.48506 * 109.46754 * 270.00224 * 3 2 1 5 5 H 1.48503 * 109.46844 * 29.99362 * 3 2 1 6 6 H 1.48488 * 109.47467 * 149.99893 * 3 2 1 7 7 C 1.38816 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00466 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.01287 * 33.60812 * 10 9 7 12 12 C 1.54266 * 110.07367 * 272.18912 * 10 9 7 13 13 C 1.54886 * 104.19557 * 264.30188 * 12 10 9 14 14 C 1.54892 * 102.74748 * 322.05671 * 13 12 10 15 15 H 1.09002 * 110.59707 * 279.20350 * 14 13 12 16 16 C 1.52999 * 110.48408 * 156.62430 * 14 13 12 17 17 N 1.46505 * 109.47182 * 70.22064 * 16 14 13 18 18 C 1.34782 * 119.99740 * 179.97438 * 17 16 14 19 19 O 1.21279 * 120.00191 * 5.10982 * 18 17 16 20 20 C 1.50697 * 119.99774 * 185.10597 * 18 17 16 21 21 H 1.09006 * 109.33668 * 231.63915 * 20 18 17 22 22 O 1.42724 * 109.34068 * 351.31776 * 20 18 17 23 23 C 1.43209 * 113.13614 * 171.99402 * 22 20 18 24 24 C 1.52970 * 108.47507 * 289.31210 * 23 22 20 25 25 C 1.50751 * 109.75831 * 49.22170 * 24 23 22 26 26 C 1.38592 * 118.75959 * 163.15982 * 25 24 23 27 27 C 1.38065 * 120.27184 * 179.77498 * 26 25 24 28 28 C 1.38264 * 119.86615 * 0.18080 * 27 26 25 29 29 C 1.38054 * 119.89145 * 359.56399 * 28 27 26 30 30 C 1.37905 * 121.34926 * 342.97801 * 25 24 23 31 31 C 1.53882 * 110.03368 * 154.99707 * 10 9 7 32 32 H 0.96994 * 119.99850 * 0.02562 * 1 2 3 33 33 H 0.97002 * 119.99984 * 359.97438 * 9 7 2 34 34 H 1.09003 * 110.48224 * 22.98440 * 12 10 9 35 35 H 1.09002 * 110.48274 * 145.62091 * 12 10 9 36 36 H 1.09001 * 110.75434 * 203.74426 * 13 12 10 37 37 H 1.08994 * 110.75716 * 80.37272 * 13 12 10 38 38 H 1.09000 * 109.46900 * 310.22543 * 16 14 13 39 39 H 1.09001 * 109.47499 * 190.22177 * 16 14 13 40 40 H 0.96994 * 120.00064 * 0.02562 * 17 16 14 41 41 H 1.09004 * 109.63459 * 169.62253 * 23 22 20 42 42 H 1.09002 * 109.80825 * 49.11398 * 23 22 20 43 43 H 1.09000 * 109.42204 * 289.13493 * 24 23 22 44 44 H 1.08998 * 109.37513 * 169.27869 * 24 23 22 45 45 H 1.07999 * 119.86633 * 359.79951 * 26 25 24 46 46 H 1.08007 * 120.07047 * 179.89902 * 27 26 25 47 47 H 1.07997 * 120.05592 * 179.80588 * 28 27 26 48 48 H 1.07998 * 119.84865 * 180.28407 * 29 28 27 49 49 H 1.09000 * 110.03195 * 0.05347 * 31 10 9 50 50 H 1.08996 * 110.03212 * 238.61688 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9833 -3.5534 0.5674 12 6 2.3708 -4.0877 -1.4474 13 6 1.2230 -5.0625 -1.8098 14 6 1.0007 -5.8359 -0.4863 15 1 1.7404 -6.6290 -0.3768 16 6 -0.4146 -6.4148 -0.4357 17 7 -0.5306 -7.5067 -1.4057 18 6 -1.6964 -8.1701 -1.5372 19 8 -2.6750 -7.8047 -0.9211 20 6 -1.7839 -9.3660 -2.4500 21 1 -2.6265 -9.2402 -3.1300 22 8 -0.5782 -9.4727 -3.2062 23 6 -0.4968 -10.6827 -3.9678 24 6 -0.2910 -11.8507 -3.0017 25 6 -1.3008 -11.7723 -1.8850 26 6 -1.5252 -12.8983 -1.1088 27 6 -2.4397 -12.8600 -0.0751 28 6 -3.1371 -11.6947 0.1844 29 6 -2.9102 -10.5712 -0.5851 30 6 -1.9941 -10.6089 -1.6250 31 6 1.1869 -4.7684 0.6116 32 1 -0.4849 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0005 34 1 2.3623 -3.2242 -2.1125 35 1 3.3332 -4.5972 -1.4943 36 1 1.5291 -5.7404 -2.6066 37 1 0.3246 -4.5136 -2.0920 38 1 -1.1353 -5.6343 -0.6794 39 1 -0.6159 -6.7955 0.5656 40 1 0.2318 -7.7526 -1.9526 41 1 0.3452 -10.6254 -4.6577 42 1 -1.4201 -10.8292 -4.5283 43 1 0.7149 -11.8032 -2.5846 44 1 -0.4168 -12.7907 -3.5388 45 1 -0.9823 -13.8093 -1.3130 46 1 -2.6132 -13.7399 0.5268 47 1 -3.8554 -11.6623 0.9902 48 1 -3.4520 -9.6601 -0.3788 49 1 0.2189 -4.3641 0.9073 50 1 1.6894 -5.2045 1.4749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086774191.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:32 Heat of formation + Delta-G solvation = -56.024183 kcal Electronic energy + Delta-G solvation = -29856.953289 eV Core-core repulsion = 25848.414508 eV Total energy + Delta-G solvation = -4008.538781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.11972 -39.34003 -38.07975 -37.90554 -34.89699 -33.52072 -33.17119 -32.11511 -30.71026 -29.91094 -28.89800 -27.43713 -26.47096 -24.43194 -23.96147 -23.13699 -22.69284 -20.92558 -20.35900 -19.80361 -19.12677 -17.75643 -17.63134 -17.06268 -16.72294 -16.04346 -15.81841 -15.75093 -15.19755 -14.96735 -14.82134 -14.50629 -14.19064 -14.01810 -13.73595 -13.52956 -13.34221 -13.18808 -12.98068 -12.81256 -12.59965 -12.32348 -12.18701 -12.07830 -11.60148 -11.37235 -11.15978 -11.10387 -10.76979 -10.71013 -10.54089 -10.44179 -10.20720 -10.19422 -10.16517 -10.03646 -9.84153 -9.58600 -9.09219 -9.00759 -8.95724 -8.84270 -6.89452 -5.72438 -3.00532 0.91415 1.05604 2.43109 3.04355 3.17439 3.43711 3.45765 3.50883 3.52663 4.20308 4.21057 4.39372 4.60876 4.62851 4.68492 4.75498 4.84798 4.89006 4.96265 5.01981 5.03477 5.09853 5.16913 5.31407 5.36237 5.42950 5.58718 5.62893 5.64409 5.76113 5.77707 5.79330 5.96931 6.06241 6.09652 6.13674 6.16268 6.18986 6.22467 6.27493 6.40518 6.42689 6.51291 6.52647 6.66242 6.70641 6.81648 6.96125 7.15163 7.48361 7.74726 8.10561 8.46917 9.57358 10.17460 10.51423 11.50234 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.002014 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.815844 B =13896.973987 C =14356.014990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.112 4.112 14 C -0.102 4.102 15 H 0.074 0.926 16 C 0.123 3.877 17 N -0.707 5.707 18 C 0.531 3.469 19 O -0.535 6.535 20 C 0.118 3.882 21 H 0.104 0.896 22 O -0.369 6.369 23 C 0.061 3.939 24 C -0.117 4.117 25 C -0.067 4.067 26 C -0.125 4.125 27 C -0.111 4.111 28 C -0.124 4.124 29 C -0.101 4.101 30 C -0.116 4.116 31 C -0.121 4.121 32 H 0.254 0.746 33 H 0.383 0.617 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.409 0.591 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.146 0.854 49 H 0.072 0.928 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 -30.421 -6.301 31.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.150 4.150 14 C -0.121 4.121 15 H 0.092 0.908 16 C 0.000 4.000 17 N -0.358 5.358 18 C 0.315 3.685 19 O -0.413 6.413 20 C 0.057 3.943 21 H 0.121 0.879 22 O -0.288 6.288 23 C -0.015 4.015 24 C -0.154 4.154 25 C -0.067 4.067 26 C -0.143 4.143 27 C -0.129 4.129 28 C -0.142 4.142 29 C -0.118 4.118 30 C -0.117 4.117 31 C -0.160 4.160 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.245 0.755 41 H 0.124 0.876 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.163 0.837 49 H 0.091 0.909 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.642 -29.839 -5.806 30.513 hybrid contribution 0.307 0.500 -0.265 0.644 sum -2.335 -29.339 -6.070 30.051 Atomic orbital electron populations 1.69662 1.05069 1.25572 1.57823 1.24743 0.95501 0.97647 1.03221 0.86211 0.78637 0.84025 0.77453 1.21818 1.21849 1.20826 1.19258 0.90990 0.84237 1.42386 0.91247 1.42545 1.05668 0.99707 1.88256 1.20800 0.94097 0.86067 0.92635 0.93425 1.23117 0.96063 0.98617 1.00854 1.22492 0.99922 0.97366 0.95194 1.22224 0.94606 0.97757 0.97563 0.90751 1.21596 0.97820 0.88763 0.91795 1.45998 1.13916 1.34953 1.40931 1.19852 0.83538 0.83063 0.82044 1.90711 1.36098 1.66787 1.47672 1.21039 0.89581 0.91711 0.92011 0.87903 1.88003 1.38669 1.40484 1.61661 1.22680 1.02782 0.83250 0.92820 1.21168 0.98800 0.99995 0.95428 1.19445 0.96951 0.92919 0.97429 1.21014 0.99244 0.97799 0.96199 1.21189 0.96219 0.98171 0.97345 1.21169 1.00129 0.92936 0.99946 1.21580 0.96853 0.99730 0.93687 1.19675 0.99313 0.94241 0.98471 1.22466 1.01443 0.95431 0.96661 0.93563 0.78262 0.90982 0.93350 0.92859 0.91322 0.90747 0.91655 0.75508 0.87566 0.92170 0.89341 0.89450 0.85884 0.85890 0.85700 0.83666 0.90906 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.72 -18.03 5.08 -52.34 -0.27 -18.29 16 10 C 0.17 3.43 3.55 -66.81 -0.24 3.20 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.15 -2.55 6.54 -25.07 -0.16 -2.71 16 13 C -0.11 -1.68 6.19 -24.74 -0.15 -1.83 16 14 C -0.10 -1.39 2.89 -88.96 -0.26 -1.65 16 15 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 16 C 0.12 1.69 4.96 -4.04 -0.02 1.67 16 17 N -0.71 -8.75 5.40 -60.29 -0.33 -9.07 16 18 C 0.53 7.02 6.87 -10.98 -0.08 6.95 16 19 O -0.53 -8.64 14.77 5.56 0.08 -8.56 16 20 C 0.12 1.23 3.22 -29.06 -0.09 1.14 16 21 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 22 O -0.37 -3.39 9.17 -35.23 -0.32 -3.72 16 23 C 0.06 0.38 6.84 37.14 0.25 0.63 16 24 C -0.12 -0.71 6.00 -27.87 -0.17 -0.87 16 25 C -0.07 -0.59 5.78 -104.59 -0.60 -1.19 16 26 C -0.12 -0.98 9.67 -39.51 -0.38 -1.36 16 27 C -0.11 -0.89 10.05 -39.64 -0.40 -1.29 16 28 C -0.12 -1.15 10.05 -39.64 -0.40 -1.54 16 29 C -0.10 -1.11 9.06 -39.50 -0.36 -1.47 16 30 C -0.12 -1.21 5.46 -104.62 -0.57 -1.78 16 31 C -0.12 -1.97 6.14 -25.61 -0.16 -2.13 16 32 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.38 10.25 7.52 -40.82 -0.31 9.95 16 34 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 38 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.41 4.45 7.25 -40.82 -0.30 4.16 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 47 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 48 H 0.15 1.80 5.83 -52.49 -0.31 1.49 16 49 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16 50 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -32.57 398.77 -11.14 -43.72 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.99 Total: 11.62 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -4.03 Total: -11.53 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.13 Total: -55.11 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.24 Total: -12.27 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.57 -11.14 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086774191.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.305 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds