Wall clock time and date at job start Wed Apr 1 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 119.99787 * 2 1 4 4 H 1.48504 * 109.46732 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46970 * 299.99786 * 3 2 1 6 6 H 1.48497 * 109.47204 * 59.99654 * 3 2 1 7 7 C 1.38804 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00482 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00331 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00412 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.67221 * 36.78024 * 10 9 7 12 12 C 1.54889 * 110.75618 * 273.54833 * 10 9 7 13 13 C 1.54264 * 104.19536 * 203.55806 * 12 10 9 14 14 C 1.53874 * 106.59855 * 23.61139 * 13 12 10 15 15 H 1.09000 * 110.03294 * 240.66468 * 14 13 12 16 16 C 1.53001 * 110.03388 * 119.28516 * 14 13 12 17 17 N 1.46495 * 109.47235 * 66.45108 * 16 14 13 18 18 C 1.34779 * 119.99841 * 180.27374 * 17 16 14 19 19 O 1.21278 * 120.00220 * 354.78845 * 18 17 16 20 20 C 1.50703 * 119.99979 * 174.78784 * 18 17 16 21 21 H 1.09001 * 109.42984 * 23.94345 * 20 18 17 22 22 C 1.53074 * 109.43536 * 143.85622 * 20 18 17 23 23 C 1.53386 * 108.30869 * 168.29946 * 22 20 18 24 24 O 1.42820 * 108.34111 * 295.22900 * 23 22 20 25 25 C 1.35852 * 117.85495 * 49.22171 * 24 23 22 26 26 C 1.39149 * 118.49458 * 163.02632 * 25 24 23 27 27 C 1.37963 * 120.21135 * 179.60508 * 26 25 24 28 28 C 1.38295 * 119.96023 * 359.97438 * 27 26 25 29 29 C 1.38104 * 119.98329 * 0.07095 * 28 27 26 30 30 C 1.38369 * 121.80413 * 342.73915 * 25 24 23 31 31 C 1.54268 * 106.59771 * 359.97438 * 14 13 12 32 32 H 0.96994 * 120.00037 * 0.02562 * 1 2 3 33 33 H 0.97002 * 119.99171 * 0.02562 * 9 7 2 34 34 H 1.08996 * 110.48593 * 84.87719 * 12 10 9 35 35 H 1.09002 * 110.48446 * 322.23868 * 12 10 9 36 36 H 1.08997 * 110.03204 * 264.32122 * 13 12 10 37 37 H 1.09008 * 110.03014 * 142.88906 * 13 12 10 38 38 H 1.09006 * 109.46767 * 306.44874 * 16 14 13 39 39 H 1.09008 * 109.46762 * 186.45604 * 16 14 13 40 40 H 0.96994 * 119.99817 * 0.02562 * 17 16 14 41 41 H 1.08996 * 109.69514 * 287.96277 * 22 20 18 42 42 H 1.08998 * 109.69182 * 48.55660 * 22 20 18 43 43 H 1.09002 * 109.68707 * 175.52482 * 23 22 20 44 44 H 1.09002 * 109.74401 * 54.96784 * 23 22 20 45 45 H 1.08000 * 119.89366 * 359.60247 * 26 25 24 46 46 H 1.08000 * 120.02132 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.00641 * 180.08860 * 28 27 26 48 48 H 1.07999 * 119.84114 * 179.97438 * 29 28 27 49 49 H 1.08994 * 110.48675 * 95.07398 * 31 14 13 50 50 H 1.09002 * 110.48535 * 217.71444 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9580 -3.5816 0.6101 12 6 2.4103 -4.0873 -1.4461 13 6 2.5946 -5.6160 -1.3513 14 6 1.7973 -6.0793 -0.1195 15 1 2.4656 -6.5466 0.6037 16 6 0.7084 -7.0678 -0.5414 17 7 1.3310 -8.2969 -1.0393 18 6 0.5609 -9.3138 -1.4746 19 8 -0.6454 -9.2502 -1.3669 20 6 1.1989 -10.5299 -2.0952 21 1 2.2259 -10.6209 -1.7416 22 6 0.4098 -11.7791 -1.6953 23 6 0.8896 -12.9501 -2.5621 24 8 0.5504 -12.6718 -3.9212 25 6 0.8811 -11.4526 -4.4210 26 6 0.8939 -11.2825 -5.8020 27 6 1.2166 -10.0571 -6.3476 28 6 1.5279 -8.9933 -5.5206 29 6 1.5171 -9.1588 -4.1496 30 6 1.1959 -10.3872 -3.5961 31 6 1.1568 -4.8158 0.4916 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0005 34 1 3.3352 -3.6110 -1.7714 35 1 1.5945 -3.8428 -2.1264 36 1 3.6500 -5.8577 -1.2256 37 1 2.2057 -6.0954 -2.2497 38 1 0.1000 -6.6236 -1.3293 39 1 0.0778 -7.3016 0.3165 40 1 2.2974 -8.3774 -1.0590 41 1 0.5870 -12.0045 -0.6437 42 1 -0.6541 -11.6102 -1.8613 43 1 0.3988 -13.8692 -2.2419 44 1 1.9701 -13.0592 -2.4682 45 1 0.6505 -12.1125 -6.4488 46 1 1.2252 -9.9285 -7.4199 47 1 1.7792 -8.0334 -5.9469 48 1 1.7611 -8.3266 -3.5059 49 1 0.1385 -4.6887 0.1245 50 1 1.1667 -4.8715 1.5802 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086829595.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:32 Heat of formation + Delta-G solvation = -54.762167 kcal Electronic energy + Delta-G solvation = -29819.311563 eV Core-core repulsion = 25810.827507 eV Total energy + Delta-G solvation = -4008.484056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.40038 -39.66158 -38.17031 -37.81483 -35.01930 -34.57454 -33.37502 -31.07883 -30.72507 -30.53184 -29.13808 -27.59178 -26.54179 -24.47675 -23.91941 -23.11959 -22.82328 -21.15492 -20.25359 -19.67154 -19.38226 -18.29204 -17.36333 -17.06699 -17.04770 -16.46237 -16.21395 -15.63637 -15.28456 -14.95868 -14.85308 -14.46117 -14.18734 -14.10607 -13.78916 -13.63213 -13.60852 -13.33740 -12.94695 -12.80678 -12.68924 -12.27954 -12.20817 -11.88235 -11.85756 -11.41524 -11.25769 -11.16241 -11.00077 -10.89231 -10.81378 -10.62049 -10.58893 -10.31023 -10.15796 -10.07923 -9.81855 -9.67219 -9.19762 -9.11434 -8.88976 -8.47789 -6.95130 -5.77363 -3.06087 0.95037 1.12606 2.39515 2.85793 2.99629 3.42309 3.46448 3.47834 3.50207 4.07887 4.21789 4.29634 4.47374 4.57674 4.69701 4.72831 4.79041 4.79794 4.87681 4.89357 5.02120 5.07208 5.11694 5.14747 5.19675 5.47175 5.49746 5.51340 5.64376 5.65640 5.70278 5.71725 5.85968 5.92293 5.96358 5.99049 6.02134 6.10280 6.18513 6.24491 6.29843 6.32885 6.43013 6.45255 6.54585 6.68824 6.84709 7.08601 7.09791 7.29118 7.70204 8.01289 8.41561 9.52433 10.11232 10.45138 11.45361 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.002039 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.302004 B =13728.469121 C =14554.008204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.052 0.948 12 C -0.143 4.143 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.125 3.875 17 N -0.726 5.726 18 C 0.523 3.477 19 O -0.531 6.531 20 C -0.062 4.062 21 H 0.100 0.900 22 C -0.148 4.148 23 C 0.064 3.936 24 O -0.315 6.315 25 C 0.141 3.859 26 C -0.151 4.151 27 C -0.083 4.083 28 C -0.148 4.148 29 C -0.081 4.081 30 C -0.152 4.152 31 C -0.121 4.121 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.066 0.934 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.126 0.874 49 H 0.069 0.931 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -28.488 -7.213 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.184 4.184 13 C -0.158 4.158 14 C -0.119 4.119 15 H 0.092 0.908 16 C 0.002 3.998 17 N -0.378 5.378 18 C 0.308 3.692 19 O -0.406 6.406 20 C -0.083 4.083 21 H 0.118 0.882 22 C -0.186 4.186 23 C -0.011 4.011 24 O -0.229 6.229 25 C 0.096 3.904 26 C -0.169 4.169 27 C -0.101 4.101 28 C -0.166 4.166 29 C -0.099 4.099 30 C -0.153 4.153 31 C -0.160 4.160 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.145 0.855 48 H 0.144 0.856 49 H 0.088 0.912 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.027 -28.415 -7.199 29.741 hybrid contribution 0.739 1.139 0.162 1.367 sum 5.765 -27.276 -7.036 28.753 Atomic orbital electron populations 1.69669 1.05100 1.25551 1.57759 1.24754 0.95518 0.97719 1.03075 0.86136 0.78767 0.84212 0.77187 1.20576 1.21884 1.21889 1.19282 0.91004 0.84131 1.42503 0.91164 1.42393 1.05767 0.99783 1.88186 1.21142 0.93871 0.85593 0.92745 0.92986 1.23067 1.01308 0.92632 1.01391 1.22216 0.98944 0.98010 0.96669 1.21959 0.96385 0.95684 0.97921 0.90799 1.21600 0.95656 0.83127 0.99408 1.46171 1.10173 1.16305 1.65142 1.20198 0.87408 0.83843 0.77785 1.90721 1.14325 1.80217 1.55365 1.20136 1.01134 0.94650 0.92390 0.88199 1.22181 1.02405 0.93050 1.00975 1.22989 1.00580 0.98430 0.79092 1.85997 1.77051 1.30778 1.29095 1.18622 0.95451 0.84047 0.92322 1.20597 1.05526 0.98945 0.91845 1.20993 0.97076 0.91969 1.00053 1.21071 1.02810 0.99476 0.93263 1.21036 0.97320 0.95834 0.95691 1.19304 1.08188 0.94563 0.93228 1.22562 1.00141 0.93466 0.99870 0.93548 0.78197 0.92586 0.91808 0.92401 0.92495 0.91116 0.91391 0.76556 0.89282 0.88630 0.86982 0.91570 0.85078 0.85204 0.85473 0.85589 0.91192 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.72 -17.86 5.26 -51.52 -0.27 -18.13 16 10 C 0.18 3.38 3.53 -65.95 -0.23 3.15 16 11 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 12 C -0.14 -2.41 6.51 -25.07 -0.16 -2.58 16 13 C -0.12 -1.48 6.13 -25.61 -0.16 -1.63 16 14 C -0.10 -1.19 2.98 -89.50 -0.27 -1.45 16 15 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 16 C 0.13 1.48 4.71 -4.04 -0.02 1.46 16 17 N -0.73 -7.07 4.60 -60.29 -0.28 -7.34 16 18 C 0.52 6.01 5.77 -10.98 -0.06 5.95 16 19 O -0.53 -8.43 16.08 5.56 0.09 -8.34 16 20 C -0.06 -0.54 2.72 -92.85 -0.25 -0.80 16 21 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 22 C -0.15 -1.18 5.35 -26.49 -0.14 -1.32 16 23 C 0.06 0.42 7.03 37.36 0.26 0.68 16 24 O -0.32 -3.09 10.27 -19.27 -0.20 -3.28 16 25 C 0.14 1.47 6.47 -39.20 -0.25 1.22 16 26 C -0.15 -1.41 9.94 -39.34 -0.39 -1.80 16 27 C -0.08 -0.71 10.04 -39.66 -0.40 -1.11 16 28 C -0.15 -1.39 10.04 -39.61 -0.40 -1.79 16 29 C -0.08 -0.82 9.10 -39.53 -0.36 -1.18 16 30 C -0.15 -1.55 5.43 -104.44 -0.57 -2.12 16 31 C -0.12 -1.88 5.97 -25.09 -0.15 -2.03 16 32 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.38 10.16 7.73 -40.82 -0.32 9.85 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.66 7.58 -51.92 -0.39 0.26 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.40 2.84 8.26 -40.82 -0.34 2.50 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.10 1.01 7.47 -51.93 -0.39 0.62 16 43 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 47 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.13 1.22 6.82 -52.49 -0.36 0.86 16 49 H 0.07 1.15 7.74 -51.93 -0.40 0.75 16 50 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -33.75 400.86 -10.79 -44.53 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -8.08 Total: 9.25 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -3.80 Total: -12.57 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.18 Total: -52.94 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.11 Total: -11.62 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.75 -10.79 -44.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086829595.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.228 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds