Wall clock time and date at job start Wed Apr 1 2020 02:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.46783 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46944 * 299.99958 * 3 2 1 6 6 H 1.48505 * 109.47198 * 60.00105 * 3 2 1 7 7 C 1.38810 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99530 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00388 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00219 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.48207 * 325.03573 * 10 9 7 12 12 C 1.52879 * 109.49772 * 85.07970 * 10 9 7 13 13 C 1.53952 * 109.72769 * 192.87865 * 12 10 9 14 14 C 1.52444 * 110.73225 * 44.36963 * 13 12 10 15 15 C 1.53806 * 109.40318 * 246.27032 * 14 13 12 16 16 C 1.51799 * 109.05751 * 77.78863 * 15 14 13 17 17 N 1.46966 * 109.39709 * 287.19181 * 16 15 14 18 18 C 1.34774 * 120.36745 * 291.90206 * 17 16 15 19 19 O 1.21284 * 119.99816 * 4.79521 * 18 17 16 20 20 C 1.50698 * 120.00330 * 184.79802 * 18 17 16 21 21 H 1.09001 * 110.83308 * 30.20773 * 20 18 17 22 22 C 1.54711 * 110.94419 * 266.49252 * 20 18 17 23 23 O 1.43763 * 102.79511 * 216.44923 * 22 20 18 24 24 C 1.36130 * 109.28908 * 27.54162 * 23 22 20 25 25 C 1.39293 * 129.87828 * 161.46710 * 24 23 22 26 26 C 1.37926 * 120.24127 * 179.58327 * 25 24 23 27 27 C 1.38282 * 120.35543 * 0.02562 * 26 25 24 28 28 C 1.38353 * 119.76243 * 0.17306 * 27 26 25 29 29 C 1.37735 * 119.97652 * 359.97438 * 28 27 26 30 30 C 1.45339 * 119.26726 * 111.62735 * 17 16 15 31 31 H 0.97002 * 120.00029 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99813 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.42833 * 312.95554 * 12 10 9 34 34 H 1.08998 * 109.42792 * 72.85732 * 12 10 9 35 35 H 1.09003 * 109.22349 * 164.68971 * 13 12 10 36 36 H 1.09001 * 109.22631 * 284.04335 * 13 12 10 37 37 H 1.09001 * 109.48261 * 6.24978 * 14 13 12 38 38 H 1.09000 * 109.48426 * 126.27671 * 14 13 12 39 39 H 1.08997 * 109.52162 * 197.73878 * 15 14 13 40 40 H 1.09002 * 109.52001 * 317.92994 * 15 14 13 41 41 H 1.09002 * 109.17064 * 167.34760 * 16 15 14 42 42 H 1.09003 * 109.60037 * 47.30053 * 16 15 14 43 43 H 1.09004 * 110.74385 * 334.76757 * 22 20 18 44 44 H 1.08993 * 110.75242 * 97.93159 * 22 20 18 45 45 H 1.07998 * 119.88074 * 359.56066 * 25 24 23 46 46 H 1.08009 * 119.82264 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.12263 * 180.15347 * 27 26 25 48 48 H 1.07999 * 120.00806 * 180.02562 * 28 27 26 49 49 H 1.09004 * 109.67332 * 76.66481 * 30 17 16 50 50 H 1.09008 * 109.67258 * 197.16081 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 2.0579 -3.6568 0.0016 11 1 2.9686 -3.5509 -0.5881 12 6 2.4212 -4.0363 1.4373 13 6 3.4538 -5.1781 1.4276 14 6 4.5430 -4.9120 0.3947 15 6 4.4537 -5.9632 -0.7244 16 6 3.3115 -5.5998 -1.6559 17 7 2.0312 -5.8700 -0.9867 18 6 1.6550 -7.1367 -0.7216 19 8 2.4112 -8.0555 -0.9560 20 6 0.2947 -7.4115 -0.1341 21 1 -0.4259 -6.6601 -0.4568 22 6 0.3636 -7.4846 1.4097 23 8 -0.5855 -8.5182 1.7222 24 6 -0.6743 -9.3796 0.6719 25 6 -1.1691 -10.6808 0.6234 26 6 -1.1715 -11.3792 -0.5660 27 6 -0.6827 -10.7953 -1.7202 28 6 -0.1856 -9.5048 -1.6797 29 6 -0.1796 -8.8066 -0.4924 30 6 1.1780 -4.7558 -0.6086 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 0.0016 33 1 2.8439 -3.1696 1.9455 34 1 1.5247 -4.3638 1.9636 35 1 3.9079 -5.2598 2.4152 36 1 2.9511 -6.1146 1.1859 37 1 4.4066 -3.9171 -0.0292 38 1 5.5204 -4.9724 0.8734 39 1 5.3896 -5.9811 -1.2829 40 1 4.2699 -6.9451 -0.2881 41 1 3.3832 -6.2014 -2.5620 42 1 3.3720 -4.5424 -1.9134 43 1 1.3638 -7.7666 1.7386 44 1 0.0656 -6.5354 1.8549 45 1 -1.5520 -11.1446 1.5204 46 1 -1.5564 -12.3880 -0.5958 47 1 -0.6886 -11.3448 -2.6500 48 1 0.1967 -9.0447 -2.5789 49 1 0.6667 -4.3694 -1.4904 50 1 0.4436 -5.0884 0.1251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088433830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:58 Heat of formation + Delta-G solvation = -14.531189 kcal Electronic energy + Delta-G solvation = -31790.904664 eV Core-core repulsion = 27784.165154 eV Total energy + Delta-G solvation = -4006.739510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.67699 -40.08947 -37.62857 -37.53220 -34.70872 -34.24602 -32.99513 -32.16499 -30.34563 -30.09460 -29.34968 -27.32091 -26.27227 -24.41783 -23.59941 -23.01251 -22.38860 -21.84472 -21.54175 -19.49858 -18.61452 -17.72376 -17.60800 -17.05833 -16.76091 -16.04675 -15.91327 -15.57035 -15.30171 -14.69175 -14.35706 -14.29278 -14.01180 -13.78286 -13.58562 -13.51701 -13.38747 -13.24427 -12.99654 -12.87590 -12.68821 -12.36383 -12.11706 -11.90863 -11.71652 -11.36980 -11.17712 -11.02061 -11.00073 -10.94618 -10.89550 -10.74854 -10.45707 -10.28751 -10.23950 -10.07237 -9.77130 -9.56691 -9.02781 -8.98619 -8.40713 -8.29823 -7.07803 -5.87120 -3.16997 1.13142 1.25441 2.50290 2.95130 3.09505 3.36682 3.43005 3.44853 3.62096 4.14611 4.35531 4.43252 4.54339 4.72681 4.85002 4.88916 4.93708 5.02860 5.11791 5.22071 5.23994 5.28761 5.32417 5.34948 5.36542 5.44192 5.48473 5.56399 5.64009 5.71307 5.79790 5.81547 5.85203 5.94167 6.03943 6.14581 6.15788 6.19324 6.25805 6.26313 6.34256 6.41992 6.43323 6.50430 6.56238 6.66368 6.85779 6.94500 7.01424 7.47949 7.60929 8.15728 8.30633 9.42355 9.96510 10.30909 11.35167 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.003033 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.135116 B = 9230.873699 C = 9884.597176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.723 5.723 10 C 0.157 3.843 11 H 0.070 0.930 12 C -0.135 4.135 13 C -0.117 4.117 14 C -0.127 4.127 15 C -0.138 4.138 16 C 0.116 3.884 17 N -0.593 5.593 18 C 0.527 3.473 19 O -0.531 6.531 20 C -0.105 4.105 21 H 0.119 0.881 22 C 0.069 3.931 23 O -0.299 6.299 24 C 0.109 3.891 25 C -0.141 4.141 26 C -0.085 4.085 27 C -0.150 4.150 28 C -0.050 4.050 29 C -0.147 4.147 30 C 0.093 3.907 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.122 0.878 49 H 0.073 0.927 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 -19.417 -1.253 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.047 3.953 11 H 0.087 0.913 12 C -0.176 4.176 13 C -0.156 4.156 14 C -0.164 4.164 15 C -0.176 4.176 16 C -0.006 4.006 17 N -0.326 5.326 18 C 0.313 3.687 19 O -0.408 6.408 20 C -0.126 4.126 21 H 0.137 0.863 22 C -0.006 4.006 23 O -0.212 6.212 24 C 0.064 3.936 25 C -0.160 4.160 26 C -0.103 4.103 27 C -0.168 4.168 28 C -0.068 4.068 29 C -0.148 4.148 30 C -0.031 4.031 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.101 0.899 44 H 0.136 0.864 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.145 0.855 48 H 0.140 0.860 49 H 0.091 0.909 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.253 -19.720 -1.181 19.795 hybrid contribution 0.159 1.291 0.027 1.301 sum 1.413 -18.429 -1.155 18.519 Atomic orbital electron populations 1.69659 1.05096 1.25697 1.57359 1.24735 0.95500 0.97696 1.02728 0.86153 0.78827 0.84163 0.77238 1.20532 1.21839 1.21836 1.19202 0.90948 0.83800 1.43091 0.91114 1.42334 1.05760 0.99503 1.88778 1.20912 0.94954 0.85620 0.93856 0.91265 1.22466 0.97575 0.97555 0.99956 1.21728 0.96767 0.98964 0.98097 1.21824 0.98293 0.99785 0.96476 1.21964 0.97747 1.00232 0.97658 1.21456 0.82069 1.02107 0.94920 1.47775 1.20822 1.05513 1.58473 1.19914 0.87557 0.82517 0.78670 1.90685 1.53774 1.43762 1.52579 1.21615 0.96975 0.96806 0.97180 0.86286 1.23789 0.93511 0.91596 0.91721 1.86840 1.59195 1.36856 1.38356 1.19555 0.96908 0.91016 0.86133 1.20219 1.05532 0.90839 0.99401 1.20857 0.98219 0.99496 0.91698 1.21009 1.01822 0.95299 0.98718 1.20276 0.96283 0.93912 0.96347 1.20222 1.05305 0.94584 0.94672 1.22140 0.93505 0.87181 1.00275 0.93463 0.78289 0.91343 0.93197 0.93292 0.92918 0.90453 0.92721 0.91465 0.90465 0.91520 0.88922 0.89900 0.86431 0.85420 0.85202 0.85494 0.85999 0.90887 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.12 9.90 -15.06 -0.15 -6.26 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -16.15 5.12 -53.26 -0.27 -16.43 16 10 C 0.16 2.67 2.29 -67.76 -0.16 2.52 16 11 H 0.07 1.21 3.28 -51.93 -0.17 1.04 16 12 C -0.14 -2.16 5.33 -26.30 -0.14 -2.30 16 13 C -0.12 -1.62 5.40 -26.52 -0.14 -1.76 16 14 C -0.13 -1.67 5.49 -26.60 -0.15 -1.82 16 15 C -0.14 -1.74 5.54 -26.92 -0.15 -1.89 16 16 C 0.12 1.51 5.15 -4.40 -0.02 1.49 16 17 N -0.59 -7.93 1.70 -174.67 -0.30 -8.23 16 18 C 0.53 7.35 5.25 -10.99 -0.06 7.29 16 19 O -0.53 -8.75 14.69 5.55 0.08 -8.67 16 20 C -0.10 -1.31 2.48 -91.56 -0.23 -1.54 16 21 H 0.12 1.37 6.75 -51.93 -0.35 1.02 16 22 C 0.07 0.83 7.33 38.06 0.28 1.11 16 23 O -0.30 -4.00 11.10 -20.15 -0.22 -4.22 16 24 C 0.11 1.43 7.04 -38.95 -0.27 1.16 16 25 C -0.14 -1.56 10.06 -39.30 -0.40 -1.95 16 26 C -0.08 -0.81 10.01 -39.68 -0.40 -1.20 16 27 C -0.15 -1.52 10.07 -39.52 -0.40 -1.92 16 28 C -0.05 -0.61 9.62 -39.72 -0.38 -0.99 16 29 C -0.15 -1.93 5.25 -104.10 -0.55 -2.48 16 30 C 0.09 1.32 5.07 -4.44 -0.02 1.30 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.38 9.16 7.80 -40.82 -0.32 8.85 16 33 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 34 H 0.05 0.77 7.87 -51.93 -0.41 0.36 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.73 5.21 -51.93 -0.27 0.45 16 37 H 0.08 1.13 5.47 -51.93 -0.28 0.84 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.11 6.03 -51.93 -0.31 0.79 16 41 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 42 H 0.09 1.22 6.06 -51.93 -0.31 0.91 16 43 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 44 H 0.12 1.21 7.84 -51.93 -0.41 0.80 16 45 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 47 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 48 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.08 0.98 5.32 -51.92 -0.28 0.71 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -30.15 379.92 -10.00 -40.15 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.29 Total: 10.78 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -3.42 Total: -9.63 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.16 Total: -50.52 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.14 Total: -12.89 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.15 -10.00 -40.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088433830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.620 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds