Wall clock time and date at job start Wed Apr 1 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.46783 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46944 * 299.99958 * 3 2 1 6 6 H 1.48505 * 109.47198 * 60.00105 * 3 2 1 7 7 C 1.38810 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99530 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00388 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00219 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.48207 * 325.03573 * 10 9 7 12 12 C 1.52879 * 109.49772 * 85.07970 * 10 9 7 13 13 C 1.53952 * 109.72769 * 192.87865 * 12 10 9 14 14 C 1.52444 * 110.73225 * 44.36963 * 13 12 10 15 15 C 1.53806 * 109.40318 * 246.27032 * 14 13 12 16 16 C 1.51799 * 109.05751 * 77.78863 * 15 14 13 17 17 N 1.46966 * 109.39709 * 287.19181 * 16 15 14 18 18 C 1.34774 * 120.36745 * 291.90206 * 17 16 15 19 19 O 1.21284 * 119.99816 * 4.79521 * 18 17 16 20 20 C 1.50698 * 120.00330 * 184.79802 * 18 17 16 21 21 H 1.09001 * 110.83308 * 30.20773 * 20 18 17 22 22 C 1.54711 * 110.94419 * 266.49252 * 20 18 17 23 23 O 1.43763 * 102.79511 * 216.44923 * 22 20 18 24 24 C 1.36130 * 109.28908 * 27.54162 * 23 22 20 25 25 C 1.39293 * 129.87828 * 161.46710 * 24 23 22 26 26 C 1.37926 * 120.24127 * 179.58327 * 25 24 23 27 27 C 1.38282 * 120.35543 * 0.02562 * 26 25 24 28 28 C 1.38353 * 119.76243 * 0.17306 * 27 26 25 29 29 C 1.37735 * 119.97652 * 359.97438 * 28 27 26 30 30 C 1.45339 * 119.26726 * 111.62735 * 17 16 15 31 31 H 0.97002 * 120.00029 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99813 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.42833 * 312.95554 * 12 10 9 34 34 H 1.08998 * 109.42792 * 72.85732 * 12 10 9 35 35 H 1.09003 * 109.22349 * 164.68971 * 13 12 10 36 36 H 1.09001 * 109.22631 * 284.04335 * 13 12 10 37 37 H 1.09001 * 109.48261 * 6.24978 * 14 13 12 38 38 H 1.09000 * 109.48426 * 126.27671 * 14 13 12 39 39 H 1.08997 * 109.52162 * 197.73878 * 15 14 13 40 40 H 1.09002 * 109.52001 * 317.92994 * 15 14 13 41 41 H 1.09002 * 109.17064 * 167.34760 * 16 15 14 42 42 H 1.09003 * 109.60037 * 47.30053 * 16 15 14 43 43 H 1.09004 * 110.74385 * 334.76757 * 22 20 18 44 44 H 1.08993 * 110.75242 * 97.93159 * 22 20 18 45 45 H 1.07998 * 119.88074 * 359.56066 * 25 24 23 46 46 H 1.08009 * 119.82264 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.12263 * 180.15347 * 27 26 25 48 48 H 1.07999 * 120.00806 * 180.02562 * 28 27 26 49 49 H 1.09004 * 109.67332 * 76.66481 * 30 17 16 50 50 H 1.09008 * 109.67258 * 197.16081 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 2.0579 -3.6568 0.0016 11 1 2.9686 -3.5509 -0.5881 12 6 2.4212 -4.0363 1.4373 13 6 3.4538 -5.1781 1.4276 14 6 4.5430 -4.9120 0.3947 15 6 4.4537 -5.9632 -0.7244 16 6 3.3115 -5.5998 -1.6559 17 7 2.0312 -5.8700 -0.9867 18 6 1.6550 -7.1367 -0.7216 19 8 2.4112 -8.0555 -0.9560 20 6 0.2947 -7.4115 -0.1341 21 1 -0.4259 -6.6601 -0.4568 22 6 0.3636 -7.4846 1.4097 23 8 -0.5855 -8.5182 1.7222 24 6 -0.6743 -9.3796 0.6719 25 6 -1.1691 -10.6808 0.6234 26 6 -1.1715 -11.3792 -0.5660 27 6 -0.6827 -10.7953 -1.7202 28 6 -0.1856 -9.5048 -1.6797 29 6 -0.1796 -8.8066 -0.4924 30 6 1.1780 -4.7558 -0.6086 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 0.0016 33 1 2.8439 -3.1696 1.9455 34 1 1.5247 -4.3638 1.9636 35 1 3.9079 -5.2598 2.4152 36 1 2.9511 -6.1146 1.1859 37 1 4.4066 -3.9171 -0.0292 38 1 5.5204 -4.9724 0.8734 39 1 5.3896 -5.9811 -1.2829 40 1 4.2699 -6.9451 -0.2881 41 1 3.3832 -6.2014 -2.5620 42 1 3.3720 -4.5424 -1.9134 43 1 1.3638 -7.7666 1.7386 44 1 0.0656 -6.5354 1.8549 45 1 -1.5520 -11.1446 1.5204 46 1 -1.5564 -12.3880 -0.5958 47 1 -0.6886 -11.3448 -2.6500 48 1 0.1967 -9.0447 -2.5789 49 1 0.6667 -4.3694 -1.4904 50 1 0.4436 -5.0884 0.1251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088433830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:57 Heat of formation + Delta-G solvation = -30.475726 kcal Electronic energy + Delta-G solvation = -31791.596071 eV Core-core repulsion = 27784.165154 eV Total energy + Delta-G solvation = -4007.430917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.65288 -41.18835 -38.88442 -38.37967 -36.26656 -35.39596 -34.18478 -33.60965 -31.69982 -31.04501 -30.36455 -28.71305 -27.43927 -25.76939 -25.03230 -24.07294 -23.29382 -23.03711 -22.58061 -20.75426 -19.77929 -19.26696 -18.68880 -18.21461 -17.74545 -17.23886 -17.04400 -16.60934 -16.42368 -16.19328 -15.60101 -15.42324 -15.18550 -15.01246 -14.91383 -14.78790 -14.46425 -14.28284 -14.14666 -14.00911 -13.74118 -13.57228 -13.18178 -13.01612 -12.90985 -12.85184 -12.61512 -12.43924 -12.36780 -12.08262 -12.01990 -11.96292 -11.80101 -11.76761 -11.55777 -11.43320 -11.39237 -10.89335 -10.69176 -9.87868 -9.59545 -9.18371 -8.95750 -7.91588 -5.18997 0.28437 0.39515 1.39447 1.48783 1.50461 1.58580 1.86445 2.18845 2.58347 2.75760 3.18776 3.40502 3.42650 3.45013 3.71680 3.82148 3.86620 3.97189 4.03829 4.10930 4.16284 4.19561 4.21498 4.33930 4.39089 4.42069 4.43870 4.50378 4.54698 4.58059 4.64008 4.65288 4.77363 4.84518 4.94485 4.96727 5.03474 5.12935 5.21563 5.29948 5.33674 5.38267 5.42228 5.45647 5.51977 5.53625 5.57981 5.61207 5.67645 6.14970 6.29869 6.34377 7.03833 7.38084 8.11828 8.34565 9.31596 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.003033 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.135116 B = 9230.873699 C = 9884.597176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.297 1.297 6 H -0.298 1.298 7 C -0.227 4.227 8 H 0.075 0.925 9 N -0.732 5.732 10 C 0.156 3.844 11 H 0.070 0.930 12 C -0.126 4.126 13 C -0.109 4.109 14 C -0.124 4.124 15 C -0.129 4.129 16 C 0.113 3.887 17 N -0.589 5.589 18 C 0.533 3.467 19 O -0.555 6.555 20 C -0.103 4.103 21 H 0.126 0.874 22 C 0.070 3.930 23 O -0.311 6.311 24 C 0.082 3.918 25 C -0.147 4.147 26 C -0.079 4.079 27 C -0.148 4.148 28 C -0.069 4.069 29 C -0.167 4.167 30 C 0.104 3.896 31 H 0.249 0.751 32 H 0.374 0.626 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.145 0.855 46 H 0.166 0.834 47 H 0.154 0.846 48 H 0.120 0.880 49 H 0.068 0.932 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 -21.264 -1.449 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.226 1.226 7 C -0.359 4.359 8 H 0.093 0.907 9 N -0.372 5.372 10 C 0.048 3.952 11 H 0.088 0.912 12 C -0.167 4.167 13 C -0.148 4.148 14 C -0.161 4.161 15 C -0.167 4.167 16 C -0.009 4.009 17 N -0.320 5.320 18 C 0.320 3.680 19 O -0.433 6.433 20 C -0.124 4.124 21 H 0.144 0.856 22 C -0.005 4.005 23 O -0.225 6.225 24 C 0.037 3.963 25 C -0.166 4.166 26 C -0.097 4.097 27 C -0.166 4.166 28 C -0.087 4.087 29 C -0.169 4.169 30 C -0.020 4.020 31 H 0.058 0.942 32 H 0.206 0.794 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.183 0.817 47 H 0.171 0.829 48 H 0.138 0.862 49 H 0.086 0.914 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.909 -21.602 -1.379 21.730 hybrid contribution 0.003 1.715 0.057 1.716 sum 1.912 -19.887 -1.322 20.022 Atomic orbital electron populations 1.69791 1.06361 1.25738 1.59808 1.25408 0.96220 1.00589 1.04191 0.85237 0.78421 0.80721 0.76392 1.19135 1.22417 1.22567 1.19517 0.91256 0.84884 1.40262 0.90729 1.42477 1.05501 1.00565 1.88678 1.21066 0.94950 0.84438 0.94784 0.91229 1.22300 0.98389 0.97419 0.98553 1.21657 0.96338 0.97817 0.98960 1.21795 0.98723 0.99118 0.96493 1.21880 0.98359 0.99066 0.97393 1.21541 0.82024 1.02055 0.95278 1.47722 1.20892 1.05163 1.58267 1.20078 0.87777 0.82078 0.78036 1.90670 1.54632 1.44359 1.53665 1.21619 0.96088 0.97205 0.97527 0.85599 1.23840 0.93285 0.92033 0.91344 1.86807 1.59582 1.37301 1.38819 1.19896 0.98370 0.91991 0.86035 1.20617 1.04922 0.90217 1.00823 1.21295 0.96932 1.00760 0.90703 1.21393 1.00493 0.94565 1.00179 1.20481 0.97183 0.95024 0.96036 1.20393 1.06250 0.94923 0.95293 1.21905 0.93186 0.86597 1.00286 0.94204 0.79379 0.93872 0.92627 0.92341 0.92708 0.91769 0.91417 0.89707 0.91799 0.91045 0.89118 0.90385 0.84981 0.83762 0.81688 0.82871 0.86196 0.91388 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.15 13.06 21.65 0.28 -55.87 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.96 44.31 29.55 68.60 2.03 46.33 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.23 -11.59 9.90 84.03 0.83 -10.75 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -32.79 5.12 -322.43 -1.65 -34.44 16 10 C 0.16 5.24 2.29 45.10 0.10 5.34 16 11 H 0.07 2.38 3.28 -2.39 -0.01 2.37 16 12 C -0.13 -3.95 5.33 30.88 0.16 -3.79 16 13 C -0.11 -2.86 5.40 30.73 0.17 -2.70 16 14 C -0.12 -3.08 5.49 30.68 0.17 -2.91 16 15 C -0.13 -3.05 5.54 30.47 0.17 -2.88 16 16 C 0.11 2.79 5.15 85.90 0.44 3.24 16 17 N -0.59 -15.22 1.70 -824.93 -1.40 -16.62 16 18 C 0.53 14.47 5.25 87.66 0.46 14.93 16 19 O -0.55 -17.92 14.69 -3.04 -0.04 -17.97 16 20 C -0.10 -2.54 2.48 -11.40 -0.03 -2.57 16 21 H 0.13 2.83 6.75 -2.39 -0.02 2.82 16 22 C 0.07 1.64 7.33 72.57 0.53 2.17 16 23 O -0.31 -8.19 11.10 -95.03 -1.05 -9.24 16 24 C 0.08 2.09 7.04 22.68 0.16 2.25 16 25 C -0.15 -2.99 10.06 22.45 0.23 -2.76 16 26 C -0.08 -1.29 10.01 22.21 0.22 -1.07 16 27 C -0.15 -2.67 10.07 22.31 0.22 -2.45 16 28 C -0.07 -1.61 9.62 22.18 0.21 -1.40 16 29 C -0.17 -4.33 5.25 -19.53 -0.10 -4.43 16 30 C 0.10 2.90 5.07 86.74 0.44 3.34 16 31 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.37 18.08 7.80 -92.71 -0.72 17.36 16 33 H 0.04 1.57 8.11 -2.39 -0.02 1.55 16 34 H 0.05 1.66 7.87 -2.39 -0.02 1.64 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.43 5.21 -2.39 -0.01 1.42 16 37 H 0.06 1.79 5.47 -2.39 -0.01 1.78 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.74 6.03 -2.39 -0.01 1.72 16 41 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 42 H 0.09 2.30 6.06 -2.39 -0.01 2.28 16 43 H 0.08 1.87 7.75 -2.39 -0.02 1.85 16 44 H 0.13 2.59 7.84 -2.39 -0.02 2.57 16 45 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 47 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 48 H 0.12 2.73 8.06 -2.91 -0.02 2.70 16 49 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 50 H 0.09 2.26 5.32 -2.38 -0.01 2.25 16 Total: -1.00 -64.78 379.92 3.27 -61.51 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.25 Total: 36.14 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 4.86 Total: -9.85 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -2.77 Total: -106.93 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.10 Total: -27.21 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.78 3.27 -61.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088433830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.035 kcal (2) G-P(sol) polarization free energy of solvation -64.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds