Wall clock time and date at job start Wed Apr 1 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99793 * 2 1 4 4 H 1.48502 * 109.47087 * 239.99856 * 3 2 1 5 5 H 1.48504 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47041 * 120.00055 * 3 2 1 7 7 C 1.38809 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00245 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00027 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.52763 * 324.87304 * 10 9 7 12 12 C 1.53808 * 109.52449 * 84.99747 * 10 9 7 13 13 C 1.52443 * 109.40036 * 197.73492 * 12 10 9 14 14 C 1.53948 * 110.73077 * 246.27408 * 13 12 10 15 15 C 1.52876 * 109.73539 * 44.36700 * 14 13 12 16 16 C 1.53446 * 109.38638 * 72.89699 * 15 14 13 17 17 N 1.45333 * 108.41429 * 282.28743 * 16 15 14 18 18 C 1.34779 * 120.37108 * 136.63380 * 17 16 15 19 19 O 1.21275 * 120.00085 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.99662 * 359.97438 * 18 17 16 21 21 H 1.09007 * 110.83467 * 297.72958 * 20 18 17 22 22 C 1.54708 * 110.94752 * 61.45166 * 20 18 17 23 23 O 1.43770 * 102.79477 * 92.79075 * 22 20 18 24 24 C 1.36136 * 109.28467 * 27.55381 * 23 22 20 25 25 C 1.39279 * 129.87660 * 161.43770 * 24 23 22 26 26 C 1.37935 * 120.24313 * 179.56357 * 25 24 23 27 27 C 1.38280 * 120.35023 * 0.06581 * 26 25 24 28 28 C 1.38351 * 119.76922 * 0.15075 * 27 26 25 29 29 C 1.37742 * 119.97464 * 359.97397 * 28 27 26 30 30 C 1.46965 * 119.26462 * 316.65527 * 17 16 15 31 31 H 0.96989 * 120.00119 * 0.02562 * 1 2 3 32 32 H 0.96996 * 119.99716 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.48035 * 77.75813 * 12 10 9 34 34 H 1.08998 * 109.49273 * 317.72223 * 12 10 9 35 35 H 1.08994 * 109.22666 * 125.95017 * 13 12 10 36 36 H 1.08998 * 109.18806 * 6.57396 * 13 12 10 37 37 H 1.08997 * 109.43043 * 284.28325 * 14 13 12 38 38 H 1.09002 * 109.38305 * 164.41754 * 14 13 12 39 39 H 1.09005 * 109.48696 * 312.92570 * 15 14 13 40 40 H 1.09004 * 109.48713 * 192.86719 * 15 14 13 41 41 H 1.09002 * 109.67222 * 42.01285 * 16 15 14 42 42 H 1.08999 * 109.68089 * 162.55150 * 16 15 14 43 43 H 1.08995 * 110.75102 * 211.12066 * 22 20 18 44 44 H 1.09002 * 110.74816 * 334.47254 * 22 20 18 45 45 H 1.08001 * 119.88066 * 359.58811 * 25 24 23 46 46 H 1.08001 * 119.82577 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.11763 * 180.13558 * 27 26 25 48 48 H 1.07998 * 120.01707 * 180.02562 * 28 27 26 49 49 H 1.08999 * 109.53106 * 351.74852 * 30 17 16 50 50 H 1.09001 * 109.59061 * 231.56799 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9679 -3.5522 -0.5905 12 6 2.4247 -4.0387 1.4447 13 6 3.5341 -5.0841 1.4259 14 6 3.0245 -6.4294 1.9742 15 6 1.6500 -6.7409 1.3819 16 6 1.8088 -7.1398 -0.0913 17 7 2.0111 -5.9324 -0.8746 18 6 2.9480 -5.8972 -1.8428 19 8 3.1108 -4.8863 -2.4926 20 6 3.7934 -7.1141 -2.1177 21 1 4.3928 -7.3749 -1.2455 22 6 2.9159 -8.3080 -2.5628 23 8 2.9283 -8.1955 -3.9960 24 6 4.0797 -7.5846 -4.3891 25 6 4.6974 -7.5620 -5.6372 26 6 5.8725 -6.8627 -5.8182 27 6 6.4485 -6.1793 -4.7630 28 6 5.8436 -6.2004 -3.5189 29 6 4.6715 -6.9002 -3.3354 30 6 1.1829 -4.7500 -0.5989 31 1 -0.4850 0.8399 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 1.5477 -4.4482 1.9461 34 1 2.7686 -3.1531 1.9790 35 1 4.3645 -4.7373 2.0408 36 1 3.8793 -5.2217 0.4013 37 1 2.9470 -6.3724 3.0599 38 1 3.7243 -7.2194 1.7017 39 1 1.0148 -5.8580 1.4530 40 1 1.1940 -7.5628 1.9339 41 1 2.6705 -7.7979 -0.2025 42 1 0.9089 -7.6518 -0.4320 43 1 3.3588 -9.2521 -2.2457 44 1 1.9017 -8.2070 -2.1764 45 1 4.2545 -8.0936 -6.4665 46 1 6.3455 -6.8494 -6.7890 47 1 7.3675 -5.6312 -4.9095 48 1 6.2898 -5.6678 -2.6922 49 1 0.3947 -5.0136 0.1063 50 1 0.7368 -4.3919 -1.5267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088433831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:02 Heat of formation + Delta-G solvation = -9.015923 kcal Electronic energy + Delta-G solvation = -31869.005958 eV Core-core repulsion = 27862.505608 eV Total energy + Delta-G solvation = -4006.500350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.73306 -39.96380 -37.52547 -37.41341 -35.10185 -33.91200 -32.98870 -32.00681 -30.19595 -29.68459 -29.61723 -27.49497 -26.16614 -24.56780 -23.61070 -22.90619 -22.36500 -21.94790 -20.73960 -19.78608 -18.98145 -17.72198 -17.23279 -17.02811 -16.60472 -16.26270 -15.84079 -15.56159 -15.40033 -14.58928 -14.48625 -14.19869 -14.02531 -13.69360 -13.61070 -13.56492 -13.26226 -13.05200 -13.00413 -12.70799 -12.64147 -12.38446 -11.87156 -11.81157 -11.68654 -11.43139 -11.24948 -11.14526 -10.92581 -10.87979 -10.75840 -10.69650 -10.56153 -10.20726 -10.12058 -9.94745 -9.67637 -9.51120 -8.98341 -8.82512 -8.31322 -8.26519 -6.89733 -5.70519 -2.98633 1.16542 1.30865 2.66336 3.02747 3.11595 3.49013 3.53088 3.54677 3.65479 4.02193 4.31856 4.44888 4.56227 4.67265 4.72546 4.88080 4.93545 4.94429 5.03016 5.05530 5.13451 5.25599 5.26917 5.30187 5.37345 5.42062 5.51048 5.54351 5.63775 5.73587 5.82507 5.85005 5.89199 5.92788 5.99630 6.02852 6.16850 6.19790 6.30519 6.33546 6.39675 6.46008 6.46895 6.50464 6.70378 6.75842 7.01129 7.04229 7.20142 7.55634 7.77830 8.33819 8.48506 9.59053 10.15075 10.50044 11.52324 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.003691 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.726839 B = 7584.443199 C = 9130.452402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.230 4.230 8 H 0.068 0.932 9 N -0.720 5.720 10 C 0.164 3.836 11 H 0.061 0.939 12 C -0.141 4.141 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.151 4.151 16 C 0.103 3.897 17 N -0.602 5.602 18 C 0.519 3.481 19 O -0.505 6.505 20 C -0.101 4.101 21 H 0.120 0.880 22 C 0.059 3.941 23 O -0.301 6.301 24 C 0.110 3.890 25 C -0.142 4.142 26 C -0.083 4.083 27 C -0.149 4.149 28 C -0.049 4.049 29 C -0.147 4.147 30 C 0.113 3.887 31 H 0.255 0.745 32 H 0.382 0.618 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.124 0.876 49 H 0.080 0.920 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.744 -23.307 -2.530 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.362 4.362 8 H 0.086 0.914 9 N -0.361 5.361 10 C 0.054 3.946 11 H 0.079 0.921 12 C -0.181 4.181 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.189 4.189 16 C -0.020 4.020 17 N -0.336 5.336 18 C 0.305 3.695 19 O -0.378 6.378 20 C -0.123 4.123 21 H 0.138 0.862 22 C -0.017 4.017 23 O -0.214 6.214 24 C 0.065 3.935 25 C -0.161 4.161 26 C -0.101 4.101 27 C -0.167 4.167 28 C -0.067 4.067 29 C -0.148 4.148 30 C -0.009 4.009 31 H 0.064 0.936 32 H 0.215 0.785 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.098 0.902 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.738 -22.671 -3.031 24.485 hybrid contribution 0.161 0.974 0.414 1.071 sum 8.899 -21.697 -2.617 23.597 Atomic orbital electron populations 1.69644 1.05046 1.25652 1.58070 1.24701 0.95493 0.97549 1.03174 0.86287 0.78546 0.83667 0.77844 1.21276 1.21722 1.21357 1.19154 0.90903 0.83934 1.42163 0.91380 1.42269 1.05613 0.99663 1.88513 1.20673 0.95516 0.85717 0.92738 0.92062 1.22527 0.97223 0.97707 1.00688 1.21704 0.98684 0.94675 1.00590 1.21719 0.95850 0.97547 0.99974 1.22349 0.99062 1.03044 0.94418 1.21724 1.01274 0.87195 0.91853 1.47751 1.37088 1.13930 1.34876 1.19968 0.80625 0.88809 0.80116 1.90807 1.66749 1.32514 1.47768 1.21582 0.96371 0.95308 0.99032 0.86192 1.23999 1.01872 0.96968 0.78817 1.86840 1.35568 1.76172 1.22862 1.19548 0.85897 0.93226 0.94842 1.20205 0.96549 1.04474 0.94823 1.20865 0.94418 0.95773 0.99056 1.21026 1.01334 1.01790 0.92570 1.20312 0.93224 0.95456 0.97745 1.20144 0.97643 1.02770 0.94258 1.21907 0.93234 0.84586 1.01178 0.93563 0.78494 0.92459 0.91696 0.93173 0.92571 0.92190 0.92722 0.88965 0.91177 0.90467 0.91712 0.89407 0.87018 0.85522 0.85194 0.85405 0.85755 0.90209 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.73 13.06 55.49 0.72 -28.01 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.61 9.88 -15.06 -0.15 -6.76 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -18.46 5.13 -53.35 -0.27 -18.73 16 10 C 0.16 3.37 2.38 -67.85 -0.16 3.20 16 11 H 0.06 1.44 6.14 -51.93 -0.32 1.12 16 12 C -0.14 -2.47 5.09 -26.60 -0.14 -2.61 16 13 C -0.12 -1.66 5.40 -26.52 -0.14 -1.80 16 14 C -0.11 -1.17 5.75 -26.30 -0.15 -1.32 16 15 C -0.15 -1.44 5.45 -26.56 -0.14 -1.59 16 16 C 0.10 0.95 4.38 -4.44 -0.02 0.93 16 17 N -0.60 -8.20 1.67 -174.36 -0.29 -8.49 16 18 C 0.52 8.08 5.55 -10.99 -0.06 8.02 16 19 O -0.51 -10.57 14.90 5.56 0.08 -10.48 16 20 C -0.10 -1.18 2.53 -91.56 -0.23 -1.42 16 21 H 0.12 1.08 7.66 -51.93 -0.40 0.68 16 22 C 0.06 0.56 6.46 38.06 0.25 0.81 16 23 O -0.30 -3.95 11.10 -20.17 -0.22 -4.17 16 24 C 0.11 1.48 7.04 -38.95 -0.27 1.21 16 25 C -0.14 -1.66 10.06 -39.31 -0.40 -2.05 16 26 C -0.08 -0.86 10.02 -39.68 -0.40 -1.26 16 27 C -0.15 -1.64 10.07 -39.52 -0.40 -2.04 16 28 C -0.05 -0.62 10.03 -39.72 -0.40 -1.02 16 29 C -0.15 -1.97 4.94 -104.10 -0.51 -2.48 16 30 C 0.11 1.92 4.64 -4.13 -0.02 1.90 16 31 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.38 10.23 7.79 -40.82 -0.32 9.91 16 33 H 0.06 0.93 5.47 -51.93 -0.28 0.65 16 34 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.84 5.37 -51.93 -0.28 0.56 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.47 7.87 -51.93 -0.41 0.06 16 39 H 0.09 1.08 3.35 -51.93 -0.17 0.91 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.54 5.22 -51.93 -0.27 0.27 16 42 H 0.06 0.49 7.70 -51.93 -0.40 0.09 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.11 0.95 5.89 -51.93 -0.31 0.64 16 45 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 48 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 49 H 0.08 1.19 6.07 -51.93 -0.32 0.87 16 50 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -35.29 377.57 -10.00 -45.29 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.24 Total: 9.55 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -3.44 Total: -8.78 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.16 Total: -55.23 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.14 Total: -14.65 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.29 -10.00 -45.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088433831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.275 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds