Wall clock time and date at job start Wed Apr 1 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99793 * 2 1 4 4 H 1.48502 * 109.47087 * 239.99856 * 3 2 1 5 5 H 1.48504 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47041 * 120.00055 * 3 2 1 7 7 C 1.38809 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00245 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00027 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.52763 * 324.87304 * 10 9 7 12 12 C 1.53808 * 109.52449 * 84.99747 * 10 9 7 13 13 C 1.52443 * 109.40036 * 197.73492 * 12 10 9 14 14 C 1.53948 * 110.73077 * 246.27408 * 13 12 10 15 15 C 1.52876 * 109.73539 * 44.36700 * 14 13 12 16 16 C 1.53446 * 109.38638 * 72.89699 * 15 14 13 17 17 N 1.45333 * 108.41429 * 282.28743 * 16 15 14 18 18 C 1.34779 * 120.37108 * 136.63380 * 17 16 15 19 19 O 1.21275 * 120.00085 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.99662 * 359.97438 * 18 17 16 21 21 H 1.09007 * 110.83467 * 297.72958 * 20 18 17 22 22 C 1.54708 * 110.94752 * 61.45166 * 20 18 17 23 23 O 1.43770 * 102.79477 * 92.79075 * 22 20 18 24 24 C 1.36136 * 109.28467 * 27.55381 * 23 22 20 25 25 C 1.39279 * 129.87660 * 161.43770 * 24 23 22 26 26 C 1.37935 * 120.24313 * 179.56357 * 25 24 23 27 27 C 1.38280 * 120.35023 * 0.06581 * 26 25 24 28 28 C 1.38351 * 119.76922 * 0.15075 * 27 26 25 29 29 C 1.37742 * 119.97464 * 359.97397 * 28 27 26 30 30 C 1.46965 * 119.26462 * 316.65527 * 17 16 15 31 31 H 0.96989 * 120.00119 * 0.02562 * 1 2 3 32 32 H 0.96996 * 119.99716 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.48035 * 77.75813 * 12 10 9 34 34 H 1.08998 * 109.49273 * 317.72223 * 12 10 9 35 35 H 1.08994 * 109.22666 * 125.95017 * 13 12 10 36 36 H 1.08998 * 109.18806 * 6.57396 * 13 12 10 37 37 H 1.08997 * 109.43043 * 284.28325 * 14 13 12 38 38 H 1.09002 * 109.38305 * 164.41754 * 14 13 12 39 39 H 1.09005 * 109.48696 * 312.92570 * 15 14 13 40 40 H 1.09004 * 109.48713 * 192.86719 * 15 14 13 41 41 H 1.09002 * 109.67222 * 42.01285 * 16 15 14 42 42 H 1.08999 * 109.68089 * 162.55150 * 16 15 14 43 43 H 1.08995 * 110.75102 * 211.12066 * 22 20 18 44 44 H 1.09002 * 110.74816 * 334.47254 * 22 20 18 45 45 H 1.08001 * 119.88066 * 359.58811 * 25 24 23 46 46 H 1.08001 * 119.82577 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.11763 * 180.13558 * 27 26 25 48 48 H 1.07998 * 120.01707 * 180.02562 * 28 27 26 49 49 H 1.08999 * 109.53106 * 351.74852 * 30 17 16 50 50 H 1.09001 * 109.59061 * 231.56799 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9679 -3.5522 -0.5905 12 6 2.4247 -4.0387 1.4447 13 6 3.5341 -5.0841 1.4259 14 6 3.0245 -6.4294 1.9742 15 6 1.6500 -6.7409 1.3819 16 6 1.8088 -7.1398 -0.0913 17 7 2.0111 -5.9324 -0.8746 18 6 2.9480 -5.8972 -1.8428 19 8 3.1108 -4.8863 -2.4926 20 6 3.7934 -7.1141 -2.1177 21 1 4.3928 -7.3749 -1.2455 22 6 2.9159 -8.3080 -2.5628 23 8 2.9283 -8.1955 -3.9960 24 6 4.0797 -7.5846 -4.3891 25 6 4.6974 -7.5620 -5.6372 26 6 5.8725 -6.8627 -5.8182 27 6 6.4485 -6.1793 -4.7630 28 6 5.8436 -6.2004 -3.5189 29 6 4.6715 -6.9002 -3.3354 30 6 1.1829 -4.7500 -0.5989 31 1 -0.4850 0.8399 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 1.5477 -4.4482 1.9461 34 1 2.7686 -3.1531 1.9790 35 1 4.3645 -4.7373 2.0408 36 1 3.8793 -5.2217 0.4013 37 1 2.9470 -6.3724 3.0599 38 1 3.7243 -7.2194 1.7017 39 1 1.0148 -5.8580 1.4530 40 1 1.1940 -7.5628 1.9339 41 1 2.6705 -7.7979 -0.2025 42 1 0.9089 -7.6518 -0.4320 43 1 3.3588 -9.2521 -2.2457 44 1 1.9017 -8.2070 -2.1764 45 1 4.2545 -8.0936 -6.4665 46 1 6.3455 -6.8494 -6.7890 47 1 7.3675 -5.6312 -4.9095 48 1 6.2898 -5.6678 -2.6922 49 1 0.3947 -5.0136 0.1063 50 1 0.7368 -4.3919 -1.5267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088433831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:00 Heat of formation + Delta-G solvation = -31.757783 kcal Electronic energy + Delta-G solvation = -31869.992119 eV Core-core repulsion = 27862.505608 eV Total energy + Delta-G solvation = -4007.486511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.67628 -41.07640 -38.71051 -38.35686 -36.73123 -35.14905 -34.19757 -33.58680 -31.29689 -31.07855 -30.54521 -28.86624 -27.25630 -25.96400 -25.12193 -23.95335 -23.29183 -22.94992 -22.18208 -20.85587 -20.16966 -19.20781 -18.67659 -17.98654 -17.56067 -17.36358 -17.02270 -16.83688 -16.39693 -16.15632 -15.67662 -15.29809 -15.22429 -15.21013 -14.94540 -14.80212 -14.43739 -14.21980 -13.97594 -13.93922 -13.56736 -13.52211 -13.12421 -12.96940 -12.79103 -12.75689 -12.60840 -12.48744 -12.30375 -12.25219 -12.10551 -11.94543 -11.79331 -11.75148 -11.60843 -11.42581 -11.20907 -10.99220 -10.73475 -9.88028 -9.54494 -9.15498 -9.01214 -7.97974 -5.25894 0.28013 0.41137 1.40398 1.44520 1.50267 1.54118 1.92691 2.28134 2.53210 2.75960 3.13658 3.34216 3.50529 3.53539 3.73873 3.87549 3.97285 4.03481 4.10711 4.15864 4.16996 4.19055 4.20466 4.35814 4.40828 4.46116 4.46647 4.49908 4.56220 4.61588 4.65644 4.70470 4.77759 4.86217 4.95184 5.02973 5.06574 5.17710 5.22032 5.33682 5.39221 5.42293 5.42929 5.44420 5.48863 5.53783 5.59172 5.63606 5.70976 6.17918 6.25011 6.45844 7.18295 7.30281 8.05101 8.29650 9.25152 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010706 B = 0.003691 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.726839 B = 7584.443199 C = 9130.452402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.060 0.940 9 N -0.734 5.734 10 C 0.166 3.834 11 H 0.024 0.976 12 C -0.128 4.128 13 C -0.114 4.114 14 C -0.107 4.107 15 C -0.149 4.149 16 C 0.092 3.908 17 N -0.593 5.593 18 C 0.513 3.487 19 O -0.574 6.574 20 C -0.094 4.094 21 H 0.152 0.848 22 C 0.059 3.941 23 O -0.321 6.321 24 C 0.089 3.911 25 C -0.154 4.154 26 C -0.081 4.081 27 C -0.155 4.155 28 C -0.071 4.071 29 C -0.170 4.170 30 C 0.126 3.874 31 H 0.252 0.748 32 H 0.373 0.627 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.124 0.876 45 H 0.143 0.857 46 H 0.162 0.838 47 H 0.149 0.851 48 H 0.123 0.877 49 H 0.106 0.894 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.657 -26.622 -1.670 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.369 4.369 8 H 0.078 0.922 9 N -0.374 5.374 10 C 0.057 3.943 11 H 0.042 0.958 12 C -0.168 4.168 13 C -0.152 4.152 14 C -0.144 4.144 15 C -0.186 4.186 16 C -0.029 4.029 17 N -0.326 5.326 18 C 0.301 3.699 19 O -0.452 6.452 20 C -0.115 4.115 21 H 0.169 0.831 22 C -0.015 4.015 23 O -0.236 6.236 24 C 0.044 3.956 25 C -0.173 4.173 26 C -0.099 4.099 27 C -0.173 4.173 28 C -0.090 4.090 29 C -0.171 4.171 30 C 0.003 3.997 31 H 0.061 0.939 32 H 0.205 0.795 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.160 0.840 46 H 0.179 0.821 47 H 0.167 0.833 48 H 0.141 0.859 49 H 0.124 0.876 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.672 -26.071 -2.129 27.889 hybrid contribution -0.085 1.964 0.111 1.969 sum 9.588 -24.107 -2.017 26.022 Atomic orbital electron populations 1.69787 1.06312 1.26106 1.59525 1.25469 0.96427 1.00715 1.03732 0.85292 0.77389 0.79602 0.78002 1.21201 1.21426 1.20168 1.19399 0.90793 0.85500 1.41168 0.92164 1.42422 1.05317 1.00829 1.88792 1.20775 0.94184 0.85016 0.94351 0.95766 1.22302 0.99298 0.97567 0.97606 1.21641 0.97242 0.96080 1.00284 1.21722 0.96894 0.95444 1.00363 1.22329 0.98177 1.03266 0.94823 1.22204 1.04114 0.85521 0.91052 1.47769 1.35777 1.14165 1.34848 1.20802 0.80553 0.89253 0.79301 1.90774 1.68791 1.35346 1.50293 1.21634 0.96061 0.93963 0.99844 0.83051 1.24341 1.02502 0.97550 0.77153 1.86792 1.35668 1.76243 1.24868 1.19861 0.86248 0.93966 0.95568 1.20595 0.97026 1.04706 0.94925 1.21266 0.93890 0.94546 1.00201 1.21377 1.02041 1.01726 0.92200 1.20550 0.93816 0.95943 0.98654 1.20421 0.98115 1.03282 0.95267 1.21484 0.93448 0.85214 0.99574 0.93915 0.79509 0.90692 0.95424 0.93281 0.93755 0.91315 0.89715 0.91519 0.87503 0.87215 0.88951 0.85218 0.85841 0.83958 0.82061 0.83326 0.85943 0.87615 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 48.95 29.55 68.60 2.03 50.98 16 4 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.24 -14.25 9.88 84.03 0.83 -13.42 16 8 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 9 N -0.73 -39.76 5.13 -322.71 -1.66 -41.42 16 10 C 0.17 7.16 2.38 45.04 0.11 7.27 16 11 H 0.02 1.23 6.14 -2.39 -0.01 1.21 16 12 C -0.13 -4.58 5.09 30.68 0.16 -4.42 16 13 C -0.11 -3.08 5.40 30.73 0.17 -2.92 16 14 C -0.11 -1.77 5.75 30.87 0.18 -1.60 16 15 C -0.15 -2.19 5.45 30.70 0.17 -2.02 16 16 C 0.09 1.31 4.38 86.75 0.38 1.69 16 17 N -0.59 -15.58 1.67 -823.95 -1.37 -16.95 16 18 C 0.51 16.00 5.55 87.66 0.49 16.49 16 19 O -0.57 -25.50 14.90 -3.01 -0.04 -25.55 16 20 C -0.09 -2.03 2.53 -11.40 -0.03 -2.06 16 21 H 0.15 2.20 7.66 -2.38 -0.02 2.18 16 22 C 0.06 0.94 6.46 72.56 0.47 1.41 16 23 O -0.32 -7.98 11.10 -95.10 -1.06 -9.04 16 24 C 0.09 2.33 7.04 22.68 0.16 2.49 16 25 C -0.15 -3.47 10.06 22.45 0.23 -3.24 16 26 C -0.08 -1.58 10.02 22.21 0.22 -1.36 16 27 C -0.16 -3.33 10.07 22.31 0.22 -3.10 16 28 C -0.07 -1.83 10.03 22.18 0.22 -1.61 16 29 C -0.17 -4.48 4.94 -19.53 -0.10 -4.57 16 30 C 0.13 4.42 4.64 86.07 0.40 4.82 16 31 H 0.25 15.46 8.31 -92.72 -0.77 14.69 16 32 H 0.37 21.11 7.79 -92.71 -0.72 20.39 16 33 H 0.07 2.40 5.47 -2.38 -0.01 2.39 16 34 H 0.03 1.16 8.09 -2.39 -0.02 1.15 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.31 5.37 -2.39 -0.01 1.30 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 0.98 7.87 -2.39 -0.02 0.96 16 39 H 0.07 1.36 3.35 -2.38 -0.01 1.35 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 0.91 5.22 -2.39 -0.01 0.90 16 42 H 0.09 0.92 7.70 -2.39 -0.02 0.90 16 43 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.12 1.62 5.89 -2.39 -0.01 1.60 16 45 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 46 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 47 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 48 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 49 H 0.11 3.11 6.07 -2.39 -0.01 3.10 16 50 H 0.04 1.58 8.09 -2.39 -0.02 1.56 16 Total: -1.00 -84.56 377.57 3.17 -81.39 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.25 Total: 31.62 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.74 Total: -10.00 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -2.75 Total: -119.40 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.10 Total: -34.59 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Total: -84.56 3.17 -81.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088433831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.634 kcal (2) G-P(sol) polarization free energy of solvation -84.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds