Wall clock time and date at job start Wed Apr 1 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99686 * 2 1 4 4 H 1.48496 * 109.46827 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47010 * 299.99756 * 3 2 1 6 6 H 1.48498 * 109.47146 * 60.00007 * 3 2 1 7 7 C 1.38810 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99685 * 162.87817 * 7 2 1 9 9 N 1.36931 * 119.99829 * 343.15625 * 7 2 1 10 10 C 1.46925 * 120.63257 * 331.90105 * 9 7 2 11 11 C 1.52761 * 109.00957 * 233.58601 * 10 9 7 12 12 C 1.53042 * 109.38463 * 305.58668 * 11 10 9 13 13 H 1.08997 * 109.45967 * 301.22215 * 12 11 10 14 14 N 1.46496 * 109.45807 * 181.25902 * 12 11 10 15 15 C 1.34770 * 119.99940 * 84.93691 * 14 12 11 16 16 O 1.21550 * 120.00582 * 359.97438 * 15 14 12 17 17 C 1.47856 * 120.00063 * 179.97438 * 15 14 12 18 18 C 1.39579 * 120.14231 * 359.71883 * 17 15 14 19 19 C 1.37958 * 119.84973 * 179.78915 * 18 17 15 20 20 C 1.38356 * 120.14548 * 0.49222 * 19 18 17 21 21 C 1.50702 * 119.85562 * 179.72056 * 20 19 18 22 22 C 1.53785 * 113.61033 * 39.15578 * 21 20 19 23 23 C 1.53952 * 87.01808 * 220.04721 * 22 21 20 24 24 C 1.53779 * 113.61102 * 301.55284 * 21 20 19 25 25 C 1.38362 * 120.29233 * 359.74073 * 20 19 18 26 26 C 1.37957 * 120.14743 * 0.02562 * 25 20 19 27 27 C 1.53042 * 109.53568 * 61.23935 * 12 11 10 28 28 H 1.08996 * 109.49662 * 178.68280 * 27 12 11 29 29 O 1.42895 * 109.52402 * 58.60256 * 27 12 11 30 30 C 1.46930 * 120.63146 * 152.18210 * 9 7 2 31 31 H 0.96998 * 120.00031 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58509 * 353.42385 * 10 9 7 33 33 H 1.08997 * 109.58753 * 113.84404 * 10 9 7 34 34 H 1.09006 * 109.56466 * 185.55153 * 11 10 9 35 35 H 1.09003 * 109.38506 * 65.51670 * 11 10 9 36 36 H 0.97001 * 120.00148 * 264.92669 * 14 12 11 37 37 H 1.08001 * 120.06952 * 0.02562 * 18 17 15 38 38 H 1.07991 * 119.92615 * 180.23261 * 19 18 17 39 39 H 1.08996 * 112.85142 * 170.35460 * 21 20 19 40 40 H 1.08991 * 113.61468 * 334.57135 * 22 21 20 41 41 H 1.09003 * 113.60841 * 105.47380 * 22 21 20 42 42 H 1.08998 * 113.54304 * 270.81436 * 23 22 21 43 43 H 1.09009 * 113.66714 * 139.93100 * 23 22 21 44 44 H 1.09005 * 113.60999 * 254.52410 * 24 21 20 45 45 H 1.09000 * 113.61571 * 25.42737 * 24 21 20 46 46 H 1.08005 * 119.92812 * 180.02562 * 25 20 19 47 47 H 1.07995 * 120.07680 * 179.97438 * 26 25 20 48 48 H 0.96701 * 114.00357 * 180.14653 * 29 27 12 49 49 H 1.08992 * 109.58923 * 246.15689 * 30 9 7 50 50 H 1.09003 * 109.58122 * 6.43989 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0544 -1.2229 -0.2748 9 7 1.3697 -2.3624 0.3447 10 6 0.2238 -2.3405 1.2640 11 6 0.4867 -3.3156 2.4102 12 6 0.8072 -4.6982 1.8374 13 1 -0.0288 -5.0414 1.2280 14 7 1.0301 -5.6416 2.9358 15 6 -0.0169 -6.2641 3.5123 16 8 -1.1463 -6.0425 3.1215 17 6 0.2081 -7.2168 4.6204 18 6 1.5041 -7.4781 5.0678 19 6 1.7068 -8.3647 6.1051 20 6 0.6297 -9.0021 6.6949 21 6 0.8591 -9.9742 7.8233 22 6 1.9574 -9.5311 8.8043 23 6 2.4055 -11.0035 8.8422 24 6 1.7761 -11.1499 7.4467 25 6 -0.6572 -8.7512 6.2529 26 6 -0.8742 -7.8632 5.2197 27 6 2.0675 -4.6146 0.9733 28 1 2.3085 -5.6040 0.5848 29 8 3.1571 -4.1340 1.7631 30 6 1.8190 -3.6536 -0.1936 31 1 -0.4850 0.8400 0.0004 32 1 0.0953 -1.3347 1.6639 33 1 -0.6780 -2.6420 0.7311 34 1 -0.3975 -3.3805 3.0443 35 1 1.3321 -2.9612 2.9999 36 1 1.9314 -5.8184 3.2479 37 1 2.3461 -6.9842 4.6055 38 1 2.7088 -8.5649 6.4548 39 1 -0.0654 -10.2809 8.3124 40 1 2.6945 -8.8616 8.3611 41 1 1.5713 -9.1667 9.7563 42 1 1.9044 -11.5915 9.6111 43 1 3.4881 -11.1314 8.8484 44 1 1.2439 -12.0904 7.3043 45 1 2.4635 -10.9237 6.6316 46 1 -1.4938 -9.2517 6.7178 47 1 -1.8791 -7.6685 4.8753 48 1 3.9895 -4.0537 1.2777 49 1 1.0500 -4.0643 -0.8477 50 1 2.7414 -3.5134 -0.7571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090307472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:19 Heat of formation + Delta-G solvation = -20.457768 kcal Electronic energy + Delta-G solvation = -29904.821503 eV Core-core repulsion = 25897.824997 eV Total energy + Delta-G solvation = -4006.996506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.56361 -39.63243 -38.26022 -37.33860 -34.93233 -34.35015 -32.21298 -31.37310 -31.10116 -29.85018 -28.73419 -26.35961 -26.01445 -24.95375 -22.99134 -22.88286 -22.25180 -21.68827 -20.18883 -19.57985 -19.39801 -17.99579 -17.11108 -16.63891 -16.15905 -15.79714 -15.64033 -15.12871 -14.83627 -14.68819 -14.52471 -14.24829 -14.10890 -13.75433 -13.61364 -13.45438 -13.30047 -13.03671 -12.86003 -12.79202 -12.28424 -12.15892 -12.07363 -11.96696 -11.39119 -11.22059 -11.02574 -10.96078 -10.85492 -10.82681 -10.68797 -10.60212 -10.30085 -10.20381 -10.02061 -9.84348 -9.58834 -9.31591 -9.18172 -8.92659 -8.63697 -8.39160 -6.66540 -5.77604 -3.20182 0.70947 1.18451 2.87791 3.34289 3.39120 3.45779 3.47697 3.75914 4.18454 4.22325 4.32436 4.47997 4.54758 4.60076 4.67103 4.73454 4.74244 4.93640 5.12789 5.17463 5.26754 5.29342 5.33796 5.36024 5.39910 5.42062 5.50762 5.55533 5.60580 5.62176 5.74269 5.76719 5.80916 5.95868 6.00340 6.12136 6.21341 6.27054 6.35833 6.40201 6.49701 6.58524 6.65615 6.68785 6.84805 6.95291 7.42156 7.68635 7.76500 7.79796 8.08207 8.41727 8.45480 9.20630 9.83456 10.39703 11.30846 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.002073 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.967463 B =13506.634455 C =13830.185093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.582 5.582 10 C 0.174 3.826 11 C -0.143 4.143 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.713 5.713 15 C 0.551 3.449 16 O -0.539 6.539 17 C -0.132 4.132 18 C -0.083 4.083 19 C -0.125 4.125 20 C -0.051 4.051 21 C -0.078 4.078 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.131 4.131 25 C -0.126 4.126 26 C -0.059 4.059 27 C 0.082 3.918 28 H 0.045 0.955 29 O -0.555 6.555 30 C 0.119 3.881 31 H 0.254 0.746 32 H 0.091 0.909 33 H 0.019 0.981 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.136 0.864 48 H 0.372 0.628 49 H 0.027 0.973 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 -22.582 15.116 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.378 4.378 8 H 0.082 0.918 9 N -0.304 5.304 10 C 0.047 3.953 11 C -0.183 4.183 12 C 0.058 3.942 13 H 0.109 0.891 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.418 6.418 17 C -0.135 4.135 18 C -0.102 4.102 19 C -0.143 4.143 20 C -0.052 4.052 21 C -0.096 4.096 22 C -0.172 4.172 23 C -0.181 4.181 24 C -0.168 4.168 25 C -0.144 4.144 26 C -0.077 4.077 27 C 0.020 3.980 28 H 0.063 0.937 29 O -0.360 6.360 30 C -0.009 4.009 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.144 0.856 47 H 0.154 0.846 48 H 0.219 0.781 49 H 0.045 0.955 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.754 -22.234 15.251 27.222 hybrid contribution 1.214 0.821 -0.321 1.500 sum 4.967 -21.413 14.929 26.572 Atomic orbital electron populations 1.70047 1.05252 1.25436 1.53814 1.25052 0.95297 0.98453 1.00963 0.86218 0.79278 0.83975 0.77223 1.20310 1.21813 1.21575 1.19149 0.92425 0.84704 1.41536 0.91755 1.43901 1.35479 1.00967 1.50038 1.20692 0.88402 0.98381 0.87783 1.22421 1.00740 0.94503 1.00683 1.21045 0.96389 0.89690 0.87050 0.89071 1.46126 1.09386 1.44115 1.36747 1.18304 0.85092 0.80483 0.82319 1.90774 1.22617 1.64675 1.63717 1.20075 0.94288 1.00299 0.98829 1.21332 0.95987 0.96822 0.96021 1.20889 0.98887 0.97706 0.96847 1.19923 0.93204 0.96061 0.95989 1.21613 0.98598 0.94963 0.94408 1.23079 0.97966 0.96814 0.99359 1.22876 1.00926 0.96871 0.97448 1.22991 0.98458 0.97861 0.97528 1.21026 0.96559 0.99138 0.97674 1.21293 0.99180 0.93452 0.93814 1.22630 0.86751 0.95749 0.92857 0.93672 1.86440 1.20307 1.89312 1.39950 1.21534 0.98702 0.88070 0.92612 0.93640 0.89135 0.96261 0.92964 0.91576 0.76519 0.85508 0.85568 0.88375 0.89551 0.91195 0.90135 0.91269 0.91249 0.89729 0.85564 0.84623 0.78114 0.95505 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 11.18 55.49 0.62 -25.82 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -6.73 9.58 -15.06 -0.14 -6.88 16 8 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 9 N -0.58 -14.38 2.94 -172.59 -0.51 -14.89 16 10 C 0.17 4.30 5.28 -3.93 -0.02 4.28 16 11 C -0.14 -3.01 5.49 -26.83 -0.15 -3.16 16 12 C 0.16 2.93 2.20 -67.89 -0.15 2.78 16 13 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 14 N -0.71 -10.99 5.00 -54.71 -0.27 -11.26 16 15 C 0.55 8.98 7.74 -12.33 -0.10 8.88 16 16 O -0.54 -10.74 16.01 5.32 0.09 -10.66 16 17 C -0.13 -1.72 5.87 -104.96 -0.62 -2.34 16 18 C -0.08 -0.87 9.54 -39.18 -0.37 -1.25 16 19 C -0.13 -1.12 8.51 -39.64 -0.34 -1.46 16 20 C -0.05 -0.45 5.30 -104.53 -0.55 -1.00 16 21 C -0.08 -0.51 3.97 -90.96 -0.36 -0.88 16 22 C -0.13 -0.80 7.47 -25.83 -0.19 -1.00 16 23 C -0.14 -0.74 8.09 -25.83 -0.21 -0.95 16 24 C -0.13 -0.77 7.54 -25.92 -0.20 -0.96 16 25 C -0.13 -1.21 9.69 -39.64 -0.38 -1.59 16 26 C -0.06 -0.70 9.60 -39.19 -0.38 -1.08 16 27 C 0.08 1.35 3.38 -26.61 -0.09 1.26 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 O -0.56 -8.93 12.09 -35.23 -0.43 -9.35 16 30 C 0.12 2.37 6.16 -3.71 -0.02 2.34 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.09 2.51 6.05 -51.93 -0.31 2.20 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.45 7.61 -51.93 -0.40 1.05 16 36 H 0.40 5.25 6.29 -40.82 -0.26 5.00 16 37 H 0.13 1.14 6.41 -52.49 -0.34 0.81 16 38 H 0.13 0.87 6.70 -52.49 -0.35 0.52 16 39 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.09 0.52 6.38 -51.93 -0.33 0.19 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.52 7.63 -51.93 -0.40 0.12 16 46 H 0.13 0.94 8.04 -52.48 -0.42 0.51 16 47 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 48 H 0.37 4.70 9.08 45.56 0.41 5.11 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -32.75 395.23 -10.88 -43.63 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.95 Total: 8.68 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -4.36 Total: -3.05 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.16 Total: -51.96 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.34 Total: -20.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.75 -10.88 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090307472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.175 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds