Wall clock time and date at job start Wed Apr 1 2020 02:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99686 * 2 1 4 4 H 1.48496 * 109.46827 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47010 * 299.99756 * 3 2 1 6 6 H 1.48498 * 109.47146 * 60.00007 * 3 2 1 7 7 C 1.38810 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99685 * 162.87817 * 7 2 1 9 9 N 1.36931 * 119.99829 * 343.15625 * 7 2 1 10 10 C 1.46925 * 120.63257 * 331.90105 * 9 7 2 11 11 C 1.52761 * 109.00957 * 233.58601 * 10 9 7 12 12 C 1.53042 * 109.38463 * 305.58668 * 11 10 9 13 13 H 1.08997 * 109.45967 * 301.22215 * 12 11 10 14 14 N 1.46496 * 109.45807 * 181.25902 * 12 11 10 15 15 C 1.34770 * 119.99940 * 84.93691 * 14 12 11 16 16 O 1.21550 * 120.00582 * 359.97438 * 15 14 12 17 17 C 1.47856 * 120.00063 * 179.97438 * 15 14 12 18 18 C 1.39579 * 120.14231 * 359.71883 * 17 15 14 19 19 C 1.37958 * 119.84973 * 179.78915 * 18 17 15 20 20 C 1.38356 * 120.14548 * 0.49222 * 19 18 17 21 21 C 1.50702 * 119.85562 * 179.72056 * 20 19 18 22 22 C 1.53785 * 113.61033 * 39.15578 * 21 20 19 23 23 C 1.53952 * 87.01808 * 220.04721 * 22 21 20 24 24 C 1.53779 * 113.61102 * 301.55284 * 21 20 19 25 25 C 1.38362 * 120.29233 * 359.74073 * 20 19 18 26 26 C 1.37957 * 120.14743 * 0.02562 * 25 20 19 27 27 C 1.53042 * 109.53568 * 61.23935 * 12 11 10 28 28 H 1.08996 * 109.49662 * 178.68280 * 27 12 11 29 29 O 1.42895 * 109.52402 * 58.60256 * 27 12 11 30 30 C 1.46930 * 120.63146 * 152.18210 * 9 7 2 31 31 H 0.96998 * 120.00031 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58509 * 353.42385 * 10 9 7 33 33 H 1.08997 * 109.58753 * 113.84404 * 10 9 7 34 34 H 1.09006 * 109.56466 * 185.55153 * 11 10 9 35 35 H 1.09003 * 109.38506 * 65.51670 * 11 10 9 36 36 H 0.97001 * 120.00148 * 264.92669 * 14 12 11 37 37 H 1.08001 * 120.06952 * 0.02562 * 18 17 15 38 38 H 1.07991 * 119.92615 * 180.23261 * 19 18 17 39 39 H 1.08996 * 112.85142 * 170.35460 * 21 20 19 40 40 H 1.08991 * 113.61468 * 334.57135 * 22 21 20 41 41 H 1.09003 * 113.60841 * 105.47380 * 22 21 20 42 42 H 1.08998 * 113.54304 * 270.81436 * 23 22 21 43 43 H 1.09009 * 113.66714 * 139.93100 * 23 22 21 44 44 H 1.09005 * 113.60999 * 254.52410 * 24 21 20 45 45 H 1.09000 * 113.61571 * 25.42737 * 24 21 20 46 46 H 1.08005 * 119.92812 * 180.02562 * 25 20 19 47 47 H 1.07995 * 120.07680 * 179.97438 * 26 25 20 48 48 H 0.96701 * 114.00357 * 180.14653 * 29 27 12 49 49 H 1.08992 * 109.58923 * 246.15689 * 30 9 7 50 50 H 1.09003 * 109.58122 * 6.43989 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0544 -1.2229 -0.2748 9 7 1.3697 -2.3624 0.3447 10 6 0.2238 -2.3405 1.2640 11 6 0.4867 -3.3156 2.4102 12 6 0.8072 -4.6982 1.8374 13 1 -0.0288 -5.0414 1.2280 14 7 1.0301 -5.6416 2.9358 15 6 -0.0169 -6.2641 3.5123 16 8 -1.1463 -6.0425 3.1215 17 6 0.2081 -7.2168 4.6204 18 6 1.5041 -7.4781 5.0678 19 6 1.7068 -8.3647 6.1051 20 6 0.6297 -9.0021 6.6949 21 6 0.8591 -9.9742 7.8233 22 6 1.9574 -9.5311 8.8043 23 6 2.4055 -11.0035 8.8422 24 6 1.7761 -11.1499 7.4467 25 6 -0.6572 -8.7512 6.2529 26 6 -0.8742 -7.8632 5.2197 27 6 2.0675 -4.6146 0.9733 28 1 2.3085 -5.6040 0.5848 29 8 3.1571 -4.1340 1.7631 30 6 1.8190 -3.6536 -0.1936 31 1 -0.4850 0.8400 0.0004 32 1 0.0953 -1.3347 1.6639 33 1 -0.6780 -2.6420 0.7311 34 1 -0.3975 -3.3805 3.0443 35 1 1.3321 -2.9612 2.9999 36 1 1.9314 -5.8184 3.2479 37 1 2.3461 -6.9842 4.6055 38 1 2.7088 -8.5649 6.4548 39 1 -0.0654 -10.2809 8.3124 40 1 2.6945 -8.8616 8.3611 41 1 1.5713 -9.1667 9.7563 42 1 1.9044 -11.5915 9.6111 43 1 3.4881 -11.1314 8.8484 44 1 1.2439 -12.0904 7.3043 45 1 2.4635 -10.9237 6.6316 46 1 -1.4938 -9.2517 6.7178 47 1 -1.8791 -7.6685 4.8753 48 1 3.9895 -4.0537 1.2777 49 1 1.0500 -4.0643 -0.8477 50 1 2.7414 -3.5134 -0.7571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090307472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:18 Heat of formation + Delta-G solvation = -41.659018 kcal Electronic energy + Delta-G solvation = -29905.740858 eV Core-core repulsion = 25897.824997 eV Total energy + Delta-G solvation = -4007.915861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.54118 -40.62697 -39.54076 -38.24762 -36.60784 -35.77132 -33.82280 -32.63117 -31.90891 -31.46889 -30.32814 -27.46588 -26.44592 -26.42883 -24.25821 -23.86737 -23.67533 -23.02810 -21.37609 -21.05933 -19.98552 -19.26276 -18.75416 -17.64975 -17.43065 -17.14437 -16.57516 -16.25649 -16.10358 -16.05671 -15.76080 -15.51324 -15.39702 -15.19290 -14.91550 -14.59950 -14.35379 -14.08387 -13.90364 -13.78402 -13.64449 -13.29324 -13.02093 -12.91319 -12.81200 -12.76646 -12.67254 -12.42073 -12.13706 -12.10665 -12.04488 -11.88053 -11.48368 -11.44425 -11.28363 -11.13222 -10.97465 -10.86486 -10.52597 -10.11713 -9.96597 -9.62857 -8.68573 -7.86760 -5.32047 -0.17927 0.40318 1.46196 1.48470 1.58636 1.80305 2.09700 2.50926 2.83009 3.28138 3.37365 3.55842 3.65365 3.69246 3.79660 3.86015 3.89487 3.92635 4.01566 4.03430 4.11947 4.24595 4.25927 4.35041 4.41522 4.47507 4.68555 4.73887 4.81493 4.83957 4.85823 4.91341 4.92886 4.93765 4.99063 5.05198 5.10787 5.14834 5.15915 5.27225 5.31793 5.38173 5.43911 5.47420 5.53854 5.62862 5.67850 5.71846 5.91880 6.37252 6.53692 6.98401 7.13389 7.18607 7.83031 8.35865 9.20427 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.002073 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.967463 B =13506.634455 C =13830.185093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.059 4.059 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.597 5.597 10 C 0.184 3.816 11 C -0.125 4.125 12 C 0.167 3.833 13 H 0.073 0.927 14 N -0.700 5.700 15 C 0.549 3.451 16 O -0.586 6.586 17 C -0.157 4.157 18 C -0.079 4.079 19 C -0.123 4.123 20 C -0.043 4.043 21 C -0.081 4.081 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.074 4.074 27 C 0.101 3.899 28 H 0.087 0.913 29 O -0.563 6.563 30 C 0.111 3.889 31 H 0.248 0.752 32 H 0.054 0.946 33 H -0.009 1.009 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.414 0.586 37 H 0.143 0.857 38 H 0.153 0.847 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.147 0.853 47 H 0.121 0.879 48 H 0.391 0.609 49 H 0.023 0.977 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 -24.953 16.669 31.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.254 4.254 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.320 5.320 10 C 0.057 3.943 11 C -0.166 4.166 12 C 0.062 3.938 13 H 0.091 0.909 14 N -0.351 5.351 15 C 0.338 3.662 16 O -0.468 6.468 17 C -0.160 4.160 18 C -0.098 4.098 19 C -0.141 4.141 20 C -0.043 4.043 21 C -0.099 4.099 22 C -0.174 4.174 23 C -0.175 4.175 24 C -0.168 4.168 25 C -0.145 4.145 26 C -0.093 4.093 27 C 0.039 3.961 28 H 0.104 0.896 29 O -0.370 6.370 30 C -0.016 4.016 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.009 0.991 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.252 0.748 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.165 0.835 47 H 0.139 0.861 48 H 0.241 0.759 49 H 0.040 0.960 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.932 -24.651 16.809 30.631 hybrid contribution 0.256 1.450 -0.753 1.653 sum 7.187 -23.201 16.056 29.116 Atomic orbital electron populations 1.70215 1.06889 1.25668 1.55893 1.25866 0.96013 1.01805 1.01707 0.85183 0.78859 0.79823 0.76426 1.18479 1.22155 1.22291 1.19556 0.92951 0.85604 1.39879 0.90672 1.44091 1.35118 1.02340 1.50476 1.20365 0.87968 0.97260 0.88724 1.22126 0.99863 0.95707 0.98855 1.20750 0.97058 0.88258 0.87719 0.90915 1.45868 1.10104 1.43193 1.35956 1.18869 0.84357 0.80417 0.82539 1.90746 1.24427 1.66328 1.65285 1.19883 0.95943 1.01149 0.98981 1.21498 0.95122 0.96929 0.96244 1.21193 1.00226 0.96700 0.95934 1.20268 0.92716 0.95488 0.95856 1.21738 0.99485 0.94846 0.93874 1.23110 0.97624 0.97461 0.99173 1.22863 1.01354 0.96226 0.97103 1.23002 0.98237 0.97554 0.97998 1.21249 0.97938 0.98460 0.96845 1.21323 0.98465 0.94542 0.94952 1.22336 0.86254 0.96567 0.90894 0.89568 1.86404 1.20987 1.89371 1.40244 1.21810 0.99077 0.86534 0.94133 0.94315 0.92744 0.99094 0.94161 0.92103 0.74799 0.83922 0.82979 0.87513 0.89441 0.91019 0.89455 0.90694 0.90850 0.89796 0.83521 0.86106 0.75928 0.95960 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.39 11.18 21.65 0.24 -57.15 16 2 C -0.06 -3.35 4.92 84.86 0.42 -2.94 16 3 Si 0.97 45.39 29.59 68.60 2.03 47.42 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.25 -13.52 9.58 84.03 0.81 -12.71 16 8 H 0.08 3.85 7.88 -2.91 -0.02 3.82 16 9 N -0.60 -29.83 2.94 -699.94 -2.06 -31.89 16 10 C 0.18 9.53 5.28 86.22 0.45 9.99 16 11 C -0.13 -5.43 5.49 30.53 0.17 -5.26 16 12 C 0.17 6.02 2.20 45.02 0.10 6.12 16 13 H 0.07 2.93 7.58 -2.39 -0.02 2.92 16 14 N -0.70 -20.98 5.00 -445.29 -2.23 -23.20 16 15 C 0.55 18.11 7.74 86.79 0.67 18.78 16 16 O -0.59 -24.47 16.01 -3.87 -0.06 -24.53 16 17 C -0.16 -4.03 5.87 -20.09 -0.12 -4.14 16 18 C -0.08 -1.50 9.54 22.53 0.21 -1.28 16 19 C -0.12 -1.83 8.51 22.23 0.19 -1.64 16 20 C -0.04 -0.64 5.30 -19.81 -0.10 -0.75 16 21 C -0.08 -0.83 3.97 -11.01 -0.04 -0.87 16 22 C -0.14 -1.20 7.47 31.18 0.23 -0.96 16 23 C -0.14 -0.97 8.09 31.18 0.25 -0.72 16 24 C -0.13 -1.12 7.54 31.12 0.23 -0.88 16 25 C -0.13 -2.25 9.69 22.23 0.22 -2.04 16 26 C -0.07 -1.78 9.60 22.53 0.22 -1.56 16 27 C 0.10 3.11 3.38 30.67 0.10 3.22 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 O -0.56 -16.34 12.09 -148.98 -1.80 -18.14 16 30 C 0.11 4.29 6.16 86.36 0.53 4.82 16 31 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.05 3.20 6.05 -2.39 -0.01 3.19 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.06 2.69 7.61 -2.39 -0.02 2.67 16 36 H 0.41 9.94 6.29 -92.71 -0.58 9.36 16 37 H 0.14 2.14 6.41 -2.91 -0.02 2.12 16 38 H 0.15 1.48 6.70 -2.92 -0.02 1.46 16 39 H 0.11 0.93 8.08 -2.39 -0.02 0.91 16 40 H 0.09 0.75 6.38 -2.39 -0.02 0.74 16 41 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.07 0.58 8.14 -2.38 -0.02 0.57 16 45 H 0.08 0.74 7.63 -2.39 -0.02 0.73 16 46 H 0.15 1.91 8.04 -2.91 -0.02 1.88 16 47 H 0.12 3.18 7.65 -2.91 -0.02 3.16 16 48 H 0.39 8.33 9.08 -74.06 -0.67 7.65 16 49 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.08 2.77 7.93 -2.39 -0.02 2.75 16 Total: -1.00 -74.24 395.23 0.37 -73.87 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.29 Total: 26.47 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.54 Total: 7.16 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -4.04 Total: -112.24 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.86 Total: -42.68 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -74.24 0.37 -73.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090307472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.208 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds