Wall clock time and date at job start Wed Apr 1 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 120.00020 * 2 1 4 4 H 1.48504 * 109.46689 * 239.99931 * 3 2 1 5 5 H 1.48497 * 109.46760 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47235 * 119.99855 * 3 2 1 7 7 C 1.38806 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00418 * 163.09496 * 7 2 1 9 9 N 1.36944 * 120.00108 * 343.09529 * 7 2 1 10 10 C 1.46920 * 120.63143 * 151.82504 * 9 7 2 11 11 C 1.53195 * 108.77341 * 126.37206 * 10 9 7 12 12 C 1.53038 * 109.31503 * 54.63391 * 11 10 9 13 13 H 1.09003 * 109.45612 * 58.64070 * 12 11 10 14 14 N 1.46491 * 109.46183 * 178.61359 * 12 11 10 15 15 C 1.34776 * 120.00336 * 274.72767 * 14 12 11 16 16 O 1.21560 * 120.00006 * 0.27103 * 15 14 12 17 17 C 1.47853 * 120.00413 * 180.27510 * 15 14 12 18 18 C 1.39572 * 120.13960 * 359.72232 * 17 15 14 19 19 C 1.37963 * 119.84751 * 179.74856 * 18 17 15 20 20 C 1.38359 * 120.14473 * 0.52589 * 19 18 17 21 21 C 1.50696 * 119.85179 * 179.72311 * 20 19 18 22 22 C 1.53782 * 113.61872 * 37.52140 * 21 20 19 23 23 C 1.53780 * 87.08126 * 220.02142 * 22 21 20 24 24 C 1.53776 * 87.08562 * 25.42918 * 23 22 21 25 25 C 1.38353 * 120.29369 * 359.74802 * 20 19 18 26 26 C 1.37956 * 120.14483 * 359.97438 * 25 20 19 27 27 C 1.53040 * 109.53757 * 298.63665 * 12 11 10 28 28 H 1.08996 * 109.49785 * 181.31593 * 27 12 11 29 29 O 1.42900 * 109.49770 * 301.41309 * 27 12 11 30 30 C 1.46919 * 120.62815 * 331.80520 * 9 7 2 31 31 H 0.97002 * 120.00058 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.58972 * 6.58562 * 10 9 7 33 33 H 1.08997 * 109.70665 * 246.22522 * 10 9 7 34 34 H 1.09000 * 109.49892 * 294.67774 * 11 10 9 35 35 H 1.09004 * 109.49733 * 174.58701 * 11 10 9 36 36 H 0.97007 * 119.99981 * 94.99562 * 14 12 11 37 37 H 1.07997 * 120.07736 * 359.97438 * 18 17 15 38 38 H 1.07999 * 119.92672 * 180.27196 * 19 18 17 39 39 H 1.08998 * 112.85203 * 168.82631 * 21 20 19 40 40 H 1.09008 * 113.60685 * 334.56823 * 22 21 20 41 41 H 1.08997 * 113.61713 * 105.46619 * 22 21 20 42 42 H 1.09002 * 113.60827 * 270.87855 * 23 22 21 43 43 H 1.09000 * 113.68794 * 139.99597 * 23 22 21 44 44 H 1.08990 * 113.61530 * 220.01986 * 24 23 22 45 45 H 1.09005 * 113.68605 * 89.12844 * 24 23 22 46 46 H 1.08004 * 119.92993 * 179.97438 * 25 20 19 47 47 H 1.08003 * 120.07286 * 180.02562 * 26 25 20 48 48 H 0.96695 * 114.00326 * 180.02562 * 29 27 12 49 49 H 1.09003 * 109.59117 * 353.41466 * 30 9 7 50 50 H 1.09000 * 109.58719 * 113.84097 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2714 9 7 1.3699 -2.3623 0.3459 10 6 1.8139 -3.6528 -0.1981 11 6 2.0681 -4.6170 0.9649 12 6 0.8130 -4.7006 1.8366 13 1 -0.0273 -5.0410 1.2314 14 7 1.0411 -5.6471 2.9311 15 6 0.8315 -6.9644 2.7378 16 8 0.4577 -7.3676 1.6536 17 6 1.0559 -7.9190 3.8443 18 6 1.4905 -7.4599 5.0887 19 6 1.6930 -8.3554 6.1185 20 6 1.4767 -9.7070 5.9166 21 6 1.7059 -10.6799 7.0442 22 6 1.2822 -10.1394 8.4202 23 6 2.5470 -10.8075 8.9847 24 6 3.1491 -10.6783 7.5756 25 6 1.0514 -10.1692 4.6839 26 6 0.8396 -9.2837 3.6473 27 6 0.4982 -3.3190 2.4145 28 1 -0.3821 -3.3840 3.0539 29 8 1.6123 -2.8576 3.1813 30 6 0.2263 -2.3402 1.2679 31 1 -0.4850 0.8401 -0.0004 32 1 2.7345 -3.5133 -0.7649 33 1 1.0420 -4.0620 -0.8499 34 1 2.9031 -4.2529 1.5634 35 1 2.3051 -5.6059 0.5725 36 1 1.3394 -5.3254 3.7963 37 1 1.6643 -6.4057 5.2461 38 1 2.0250 -8.0010 7.0831 39 1 1.3215 -11.6767 6.8280 40 1 1.2970 -9.0514 8.4852 41 1 0.3550 -10.5741 8.7934 42 1 2.3919 -11.8392 9.3003 43 1 3.0609 -10.2078 9.7359 44 1 3.7290 -11.5480 7.2671 45 1 3.6748 -9.7381 7.4086 46 1 0.8847 -11.2255 4.5326 47 1 0.5072 -9.6458 2.6856 48 1 1.4822 -1.9858 3.5788 49 1 0.0992 -1.3344 1.6685 50 1 -0.6769 -2.6410 0.7370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090307477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:30 Heat of formation + Delta-G solvation = -21.499573 kcal Electronic energy + Delta-G solvation = -29915.453552 eV Core-core repulsion = 25908.411870 eV Total energy + Delta-G solvation = -4007.041682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.57448 -39.63547 -38.21936 -37.33128 -34.79980 -34.36189 -32.37910 -31.44319 -31.11202 -29.33204 -29.03611 -26.37268 -26.01637 -24.96538 -23.01144 -22.90292 -22.24418 -21.66078 -20.19396 -19.56904 -19.38935 -18.00626 -17.17899 -16.63799 -16.12339 -15.70232 -15.50610 -15.14901 -14.97520 -14.76280 -14.57834 -14.17002 -13.87201 -13.77299 -13.63048 -13.47304 -13.29255 -13.07370 -12.85298 -12.74732 -12.29726 -12.19425 -12.04839 -11.97999 -11.39953 -11.26376 -11.14216 -10.96158 -10.83233 -10.79514 -10.61208 -10.59654 -10.47272 -10.19552 -10.06274 -9.82406 -9.60936 -9.19336 -9.18817 -8.94045 -8.64648 -8.48969 -6.68084 -5.81892 -3.22919 0.69835 1.17597 2.86168 3.33722 3.38046 3.42670 3.44350 3.74390 4.18301 4.21857 4.32442 4.47473 4.54290 4.59960 4.69232 4.72695 4.81663 4.94064 5.12377 5.16903 5.28868 5.30560 5.33902 5.38907 5.40696 5.45930 5.51083 5.55286 5.57915 5.62097 5.73852 5.80252 5.95649 5.99527 6.03856 6.11069 6.20446 6.22731 6.29197 6.35103 6.47742 6.56754 6.67609 6.80224 6.86543 6.99126 7.17093 7.42294 7.74310 7.78179 8.22971 8.40235 8.42731 9.17588 9.80627 10.37831 11.26937 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.002079 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.264403 B =13467.111979 C =14095.576870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.243 4.243 8 H 0.065 0.935 9 N -0.582 5.582 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.713 5.713 15 C 0.551 3.449 16 O -0.542 6.542 17 C -0.133 4.133 18 C -0.082 4.082 19 C -0.126 4.126 20 C -0.051 4.051 21 C -0.078 4.078 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.131 4.131 25 C -0.126 4.126 26 C -0.059 4.059 27 C 0.072 3.928 28 H 0.043 0.957 29 O -0.560 6.560 30 C 0.146 3.854 31 H 0.254 0.746 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.400 0.600 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.136 0.864 48 H 0.375 0.625 49 H 0.096 0.904 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -19.987 17.972 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.059 3.941 13 H 0.109 0.891 14 N -0.363 5.363 15 C 0.338 3.662 16 O -0.421 6.421 17 C -0.136 4.136 18 C -0.101 4.101 19 C -0.143 4.143 20 C -0.051 4.051 21 C -0.096 4.096 22 C -0.172 4.172 23 C -0.181 4.181 24 C -0.169 4.169 25 C -0.144 4.144 26 C -0.077 4.077 27 C 0.011 3.989 28 H 0.061 0.939 29 O -0.365 6.365 30 C 0.019 3.981 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.236 0.764 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.144 0.856 47 H 0.153 0.847 48 H 0.222 0.778 49 H 0.114 0.886 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.138 -20.661 16.962 26.817 hybrid contribution 0.252 1.606 0.541 1.713 sum 2.390 -19.055 17.503 25.984 Atomic orbital electron populations 1.70007 1.05198 1.25607 1.54440 1.25033 0.95305 0.98388 1.01192 0.86348 0.78851 0.83265 0.78183 1.20913 1.21746 1.21058 1.19138 0.92527 0.84676 1.40893 0.91735 1.43862 1.35458 1.01741 1.49391 1.20892 0.97921 0.86402 0.92667 1.22304 0.97527 0.99336 0.98463 1.21033 0.99371 0.86254 0.87457 0.89092 1.46147 1.67851 1.06117 1.16163 1.18320 0.77665 0.82552 0.87623 1.90763 1.46901 1.78378 1.26032 1.20069 1.04684 0.94500 0.94308 1.21344 0.96734 0.99918 0.92124 1.20906 1.01732 0.92588 0.99113 1.19922 0.96674 0.94013 0.94530 1.21616 0.97711 0.98072 0.92201 1.23050 0.98162 1.01050 0.94948 1.22841 0.97310 1.01160 0.96815 1.22992 0.95284 1.02711 0.95865 1.21019 1.01086 0.99782 0.92543 1.21285 0.95412 0.91641 0.99405 1.22851 0.87615 0.94110 0.94296 0.93876 1.86341 1.41903 1.38655 1.69645 1.21434 0.89718 0.98310 0.88672 0.93594 0.92443 0.96220 0.91205 0.92866 0.76402 0.85462 0.85527 0.88365 0.89535 0.91228 0.90135 0.91260 0.91244 0.89697 0.85570 0.84652 0.77816 0.88634 0.95415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.65 11.20 55.49 0.62 -25.03 16 2 C 0.00 -0.04 4.92 -17.43 -0.09 -0.12 16 3 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.55 9.58 -15.06 -0.14 -6.70 16 8 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.58 -14.36 2.93 -172.32 -0.51 -14.87 16 10 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 11 C -0.14 -2.63 5.51 -26.61 -0.15 -2.77 16 12 C 0.16 2.94 2.20 -67.89 -0.15 2.79 16 13 H 0.09 1.79 7.57 -51.93 -0.39 1.40 16 14 N -0.71 -10.96 5.00 -54.71 -0.27 -11.24 16 15 C 0.55 8.83 7.74 -12.33 -0.10 8.74 16 16 O -0.54 -10.51 16.01 5.31 0.09 -10.43 16 17 C -0.13 -1.71 5.87 -104.97 -0.62 -2.33 16 18 C -0.08 -0.87 9.54 -39.19 -0.37 -1.24 16 19 C -0.13 -1.12 8.58 -39.64 -0.34 -1.46 16 20 C -0.05 -0.44 5.30 -104.54 -0.55 -1.00 16 21 C -0.08 -0.51 3.98 -90.96 -0.36 -0.87 16 22 C -0.13 -0.78 7.45 -25.92 -0.19 -0.98 16 23 C -0.14 -0.74 8.08 -25.92 -0.21 -0.95 16 24 C -0.13 -0.79 7.55 -25.92 -0.20 -0.98 16 25 C -0.13 -1.19 9.69 -39.64 -0.38 -1.58 16 26 C -0.06 -0.69 9.60 -39.19 -0.38 -1.07 16 27 C 0.07 1.32 3.38 -26.61 -0.09 1.23 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 O -0.56 -9.79 12.09 -35.23 -0.43 -10.22 16 30 C 0.15 3.31 4.95 -3.71 -0.02 3.30 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 1.41 7.61 -51.93 -0.40 1.02 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.40 5.36 6.29 -40.82 -0.26 5.10 16 37 H 0.13 1.16 6.41 -52.49 -0.34 0.83 16 38 H 0.13 0.88 6.64 -52.49 -0.35 0.53 16 39 H 0.10 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.09 0.50 6.30 -51.92 -0.33 0.18 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.54 7.72 -51.93 -0.40 0.14 16 46 H 0.13 0.91 8.05 -52.48 -0.42 0.49 16 47 H 0.14 1.63 7.65 -52.48 -0.40 1.22 16 48 H 0.38 5.67 9.08 45.56 0.41 6.09 16 49 H 0.10 2.37 6.06 -51.93 -0.31 2.05 16 50 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -31.54 395.29 -10.87 -42.41 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.95 Total: 9.86 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -4.36 Total: -2.77 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.16 Total: -51.13 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.34 Total: -20.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.54 -10.87 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090307477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.915 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds