Wall clock time and date at job start Wed Apr 1 2020 02:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 120.00020 * 2 1 4 4 H 1.48504 * 109.46689 * 239.99931 * 3 2 1 5 5 H 1.48497 * 109.46760 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47235 * 119.99855 * 3 2 1 7 7 C 1.38806 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00418 * 163.09496 * 7 2 1 9 9 N 1.36944 * 120.00108 * 343.09529 * 7 2 1 10 10 C 1.46920 * 120.63143 * 151.82504 * 9 7 2 11 11 C 1.53195 * 108.77341 * 126.37206 * 10 9 7 12 12 C 1.53038 * 109.31503 * 54.63391 * 11 10 9 13 13 H 1.09003 * 109.45612 * 58.64070 * 12 11 10 14 14 N 1.46491 * 109.46183 * 178.61359 * 12 11 10 15 15 C 1.34776 * 120.00336 * 274.72767 * 14 12 11 16 16 O 1.21560 * 120.00006 * 0.27103 * 15 14 12 17 17 C 1.47853 * 120.00413 * 180.27510 * 15 14 12 18 18 C 1.39572 * 120.13960 * 359.72232 * 17 15 14 19 19 C 1.37963 * 119.84751 * 179.74856 * 18 17 15 20 20 C 1.38359 * 120.14473 * 0.52589 * 19 18 17 21 21 C 1.50696 * 119.85179 * 179.72311 * 20 19 18 22 22 C 1.53782 * 113.61872 * 37.52140 * 21 20 19 23 23 C 1.53780 * 87.08126 * 220.02142 * 22 21 20 24 24 C 1.53776 * 87.08562 * 25.42918 * 23 22 21 25 25 C 1.38353 * 120.29369 * 359.74802 * 20 19 18 26 26 C 1.37956 * 120.14483 * 359.97438 * 25 20 19 27 27 C 1.53040 * 109.53757 * 298.63665 * 12 11 10 28 28 H 1.08996 * 109.49785 * 181.31593 * 27 12 11 29 29 O 1.42900 * 109.49770 * 301.41309 * 27 12 11 30 30 C 1.46919 * 120.62815 * 331.80520 * 9 7 2 31 31 H 0.97002 * 120.00058 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.58972 * 6.58562 * 10 9 7 33 33 H 1.08997 * 109.70665 * 246.22522 * 10 9 7 34 34 H 1.09000 * 109.49892 * 294.67774 * 11 10 9 35 35 H 1.09004 * 109.49733 * 174.58701 * 11 10 9 36 36 H 0.97007 * 119.99981 * 94.99562 * 14 12 11 37 37 H 1.07997 * 120.07736 * 359.97438 * 18 17 15 38 38 H 1.07999 * 119.92672 * 180.27196 * 19 18 17 39 39 H 1.08998 * 112.85203 * 168.82631 * 21 20 19 40 40 H 1.09008 * 113.60685 * 334.56823 * 22 21 20 41 41 H 1.08997 * 113.61713 * 105.46619 * 22 21 20 42 42 H 1.09002 * 113.60827 * 270.87855 * 23 22 21 43 43 H 1.09000 * 113.68794 * 139.99597 * 23 22 21 44 44 H 1.08990 * 113.61530 * 220.01986 * 24 23 22 45 45 H 1.09005 * 113.68605 * 89.12844 * 24 23 22 46 46 H 1.08004 * 119.92993 * 179.97438 * 25 20 19 47 47 H 1.08003 * 120.07286 * 180.02562 * 26 25 20 48 48 H 0.96695 * 114.00326 * 180.02562 * 29 27 12 49 49 H 1.09003 * 109.59117 * 353.41466 * 30 9 7 50 50 H 1.09000 * 109.58719 * 113.84097 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2714 9 7 1.3699 -2.3623 0.3459 10 6 1.8139 -3.6528 -0.1981 11 6 2.0681 -4.6170 0.9649 12 6 0.8130 -4.7006 1.8366 13 1 -0.0273 -5.0410 1.2314 14 7 1.0411 -5.6471 2.9311 15 6 0.8315 -6.9644 2.7378 16 8 0.4577 -7.3676 1.6536 17 6 1.0559 -7.9190 3.8443 18 6 1.4905 -7.4599 5.0887 19 6 1.6930 -8.3554 6.1185 20 6 1.4767 -9.7070 5.9166 21 6 1.7059 -10.6799 7.0442 22 6 1.2822 -10.1394 8.4202 23 6 2.5470 -10.8075 8.9847 24 6 3.1491 -10.6783 7.5756 25 6 1.0514 -10.1692 4.6839 26 6 0.8396 -9.2837 3.6473 27 6 0.4982 -3.3190 2.4145 28 1 -0.3821 -3.3840 3.0539 29 8 1.6123 -2.8576 3.1813 30 6 0.2263 -2.3402 1.2679 31 1 -0.4850 0.8401 -0.0004 32 1 2.7345 -3.5133 -0.7649 33 1 1.0420 -4.0620 -0.8499 34 1 2.9031 -4.2529 1.5634 35 1 2.3051 -5.6059 0.5725 36 1 1.3394 -5.3254 3.7963 37 1 1.6643 -6.4057 5.2461 38 1 2.0250 -8.0010 7.0831 39 1 1.3215 -11.6767 6.8280 40 1 1.2970 -9.0514 8.4852 41 1 0.3550 -10.5741 8.7934 42 1 2.3919 -11.8392 9.3003 43 1 3.0609 -10.2078 9.7359 44 1 3.7290 -11.5480 7.2671 45 1 3.6748 -9.7381 7.4086 46 1 0.8847 -11.2255 4.5326 47 1 0.5072 -9.6458 2.6856 48 1 1.4822 -1.9858 3.5788 49 1 0.0992 -1.3344 1.6685 50 1 -0.6769 -2.6410 0.7370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090307477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:29 Heat of formation + Delta-G solvation = -40.980754 kcal Electronic energy + Delta-G solvation = -29916.298320 eV Core-core repulsion = 25908.411870 eV Total energy + Delta-G solvation = -4007.886449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.53767 -40.62688 -39.53150 -38.25097 -36.50764 -35.80087 -34.03301 -32.56368 -31.90439 -31.02345 -30.64204 -27.46716 -26.45406 -26.42783 -24.32196 -23.80840 -23.65316 -23.01728 -21.35801 -21.04942 -19.98732 -19.34596 -18.76915 -17.64735 -17.28559 -17.08255 -16.78059 -16.26079 -16.10462 -16.00475 -15.67326 -15.51406 -15.38734 -15.12695 -14.96307 -14.59233 -14.35193 -14.07766 -13.88407 -13.78311 -13.66241 -13.29400 -13.15120 -12.90907 -12.79051 -12.75372 -12.62569 -12.39922 -12.26360 -12.10136 -12.04227 -11.85192 -11.49247 -11.45159 -11.28172 -11.13969 -10.97253 -10.75443 -10.58210 -10.12790 -9.96366 -9.62846 -8.68153 -7.87767 -5.32408 -0.17750 0.40559 1.49537 1.50274 1.58056 1.80599 2.09416 2.51861 2.83146 3.24364 3.37931 3.55891 3.65613 3.69312 3.80264 3.87646 3.89496 3.92875 3.99819 4.01814 4.11672 4.24778 4.32660 4.37343 4.41781 4.47699 4.58297 4.71302 4.81411 4.82661 4.86350 4.91511 4.92684 4.93302 5.04792 5.05613 5.14443 5.15863 5.16386 5.27297 5.32080 5.38143 5.40889 5.46601 5.53597 5.54902 5.64803 5.71938 5.92081 6.36869 6.53359 6.90598 7.14198 7.17261 7.81789 8.35475 9.18642 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023440 B = 0.002079 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.264403 B =13467.111979 C =14095.576870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.255 4.255 8 H 0.061 0.939 9 N -0.597 5.597 10 C 0.145 3.855 11 C -0.119 4.119 12 C 0.168 3.832 13 H 0.073 0.927 14 N -0.702 5.702 15 C 0.551 3.449 16 O -0.584 6.584 17 C -0.157 4.157 18 C -0.081 4.081 19 C -0.124 4.124 20 C -0.043 4.043 21 C -0.081 4.081 22 C -0.135 4.135 23 C -0.139 4.139 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.072 4.072 27 C 0.091 3.909 28 H 0.069 0.931 29 O -0.560 6.560 30 C 0.150 3.850 31 H 0.251 0.749 32 H 0.056 0.944 33 H 0.011 0.989 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.413 0.587 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.148 0.852 47 H 0.123 0.877 48 H 0.387 0.613 49 H 0.074 0.926 50 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -20.980 20.912 29.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.385 4.385 8 H 0.079 0.921 9 N -0.320 5.320 10 C 0.019 3.981 11 C -0.159 4.159 12 C 0.063 3.937 13 H 0.091 0.909 14 N -0.352 5.352 15 C 0.340 3.660 16 O -0.466 6.466 17 C -0.160 4.160 18 C -0.099 4.099 19 C -0.142 4.142 20 C -0.043 4.043 21 C -0.099 4.099 22 C -0.173 4.173 23 C -0.176 4.176 24 C -0.170 4.170 25 C -0.145 4.145 26 C -0.091 4.091 27 C 0.030 3.970 28 H 0.087 0.913 29 O -0.367 6.367 30 C 0.024 3.976 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.251 0.749 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.166 0.834 47 H 0.141 0.859 48 H 0.236 0.764 49 H 0.093 0.907 50 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 3.288 -21.664 19.946 29.631 hybrid contribution -0.091 1.819 -0.355 1.856 sum 3.197 -19.844 19.592 28.069 Atomic orbital electron populations 1.70158 1.06486 1.26002 1.55523 1.25734 0.96027 1.01243 1.01264 0.85329 0.77499 0.79198 0.78289 1.20758 1.22070 1.20081 1.19381 0.92603 0.85773 1.40756 0.92081 1.44078 1.35699 1.01988 1.50227 1.20959 0.97460 0.86064 0.93645 1.22074 0.97911 0.98436 0.97517 1.20728 0.98036 0.86882 0.88005 0.90904 1.45903 1.67775 1.05678 1.15885 1.18833 0.76456 0.82797 0.87915 1.90736 1.48888 1.78998 1.27968 1.19881 1.07626 0.94160 0.94296 1.21493 0.96073 1.00968 0.91398 1.21194 1.00871 0.92486 0.99601 1.20259 0.94772 0.94538 0.94757 1.21736 0.98426 0.98048 0.91668 1.23075 0.98706 1.01207 0.94271 1.22832 0.96679 1.01672 0.96402 1.23004 0.94806 1.02746 0.96414 1.21254 1.00506 1.00533 0.92165 1.21325 0.96181 0.91783 0.99810 1.22496 0.88864 0.92668 0.92956 0.91299 1.86314 1.41536 1.39630 1.69227 1.21322 0.88367 0.98374 0.89570 0.93975 0.92514 0.97121 0.91582 0.92644 0.74926 0.84161 0.83131 0.87363 0.89436 0.90844 0.89375 0.90803 0.90908 0.90036 0.83419 0.85874 0.76390 0.90735 0.97818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.80 11.20 21.65 0.24 -53.56 16 2 C -0.05 -2.59 4.92 84.86 0.42 -2.17 16 3 Si 0.97 44.03 29.59 68.60 2.03 46.06 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.25 -13.91 9.58 84.03 0.81 -13.10 16 8 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 9 N -0.60 -29.97 2.93 -699.11 -2.05 -32.02 16 10 C 0.15 6.49 6.52 86.36 0.56 7.05 16 11 C -0.12 -4.62 5.51 30.67 0.17 -4.45 16 12 C 0.17 6.08 2.20 45.02 0.10 6.18 16 13 H 0.07 2.94 7.57 -2.39 -0.02 2.92 16 14 N -0.70 -21.08 5.00 -445.28 -2.23 -23.31 16 15 C 0.55 17.70 7.74 86.79 0.67 18.37 16 16 O -0.58 -23.36 16.01 -3.90 -0.06 -23.42 16 17 C -0.16 -3.95 5.87 -20.09 -0.12 -4.07 16 18 C -0.08 -1.54 9.54 22.53 0.21 -1.32 16 19 C -0.12 -1.86 8.58 22.23 0.19 -1.67 16 20 C -0.04 -0.63 5.30 -19.81 -0.10 -0.74 16 21 C -0.08 -0.81 3.98 -11.01 -0.04 -0.86 16 22 C -0.14 -1.15 7.45 31.12 0.23 -0.92 16 23 C -0.14 -1.00 8.08 31.12 0.25 -0.75 16 24 C -0.13 -1.20 7.55 31.12 0.23 -0.96 16 25 C -0.13 -2.17 9.69 22.23 0.22 -1.96 16 26 C -0.07 -1.67 9.60 22.53 0.22 -1.46 16 27 C 0.09 3.27 3.38 30.67 0.10 3.37 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 O -0.56 -18.68 12.09 -148.98 -1.80 -20.48 16 30 C 0.15 6.97 4.95 86.36 0.43 7.40 16 31 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.06 2.49 7.93 -2.38 -0.02 2.47 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 2.62 7.61 -2.39 -0.02 2.60 16 35 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.41 10.31 6.29 -92.70 -0.58 9.73 16 37 H 0.14 2.21 6.41 -2.91 -0.02 2.19 16 38 H 0.15 1.54 6.64 -2.91 -0.02 1.52 16 39 H 0.11 0.90 8.09 -2.39 -0.02 0.89 16 40 H 0.09 0.73 6.30 -2.38 -0.02 0.71 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.08 0.81 7.72 -2.38 -0.02 0.79 16 46 H 0.15 1.81 8.05 -2.91 -0.02 1.79 16 47 H 0.12 3.08 7.65 -2.91 -0.02 3.06 16 48 H 0.39 11.03 9.08 -74.06 -0.67 10.36 16 49 H 0.07 3.77 6.06 -2.39 -0.01 3.75 16 50 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -68.80 395.29 0.39 -68.41 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.29 Total: 30.37 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 4.54 Total: 7.94 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -4.04 Total: -108.88 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.86 Total: -43.90 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.80 0.39 -68.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090307477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.434 kcal (2) G-P(sol) polarization free energy of solvation -68.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds