Wall clock time and date at job start Wed Apr 1 2020 02:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99550 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47205 * 300.00107 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00263 * 3 2 1 7 7 C 1.38808 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00232 * 192.52217 * 7 2 1 9 9 N 1.36942 * 119.99791 * 12.52689 * 7 2 1 10 10 C 1.46923 * 120.62599 * 210.58612 * 9 7 2 11 11 C 1.53192 * 108.77430 * 233.62787 * 10 9 7 12 12 C 1.53050 * 109.31096 * 305.36476 * 11 10 9 13 13 H 1.08997 * 109.44872 * 301.35141 * 12 11 10 14 14 N 1.46499 * 109.45732 * 181.38509 * 12 11 10 15 15 C 1.34781 * 120.00166 * 84.93546 * 14 12 11 16 16 O 1.21281 * 119.99842 * 5.13368 * 15 14 12 17 17 C 1.50698 * 120.00054 * 185.13405 * 15 14 12 18 18 C 1.50703 * 112.84786 * 296.97196 * 17 15 14 19 19 C 1.38233 * 119.99640 * 114.57363 * 18 17 15 20 20 C 1.38232 * 119.99948 * 180.02562 * 19 18 17 21 21 C 1.38234 * 120.00006 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99910 * 359.97438 * 21 20 19 23 23 C 1.38227 * 119.99954 * 0.04448 * 22 21 20 24 24 C 1.53778 * 113.61086 * 68.16900 * 17 15 14 25 25 C 1.53953 * 87.01873 * 89.23061 * 24 17 15 26 26 C 1.53776 * 87.11238 * 25.36081 * 25 24 17 27 27 C 1.53039 * 109.53536 * 61.36404 * 12 11 10 28 28 H 1.08997 * 109.49942 * 58.62033 * 27 12 11 29 29 O 1.42903 * 109.49473 * 178.68311 * 27 12 11 30 30 C 1.46925 * 120.63092 * 30.60007 * 9 7 2 31 31 H 0.97001 * 120.00418 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.59112 * 353.41466 * 10 9 7 33 33 H 1.09004 * 109.58883 * 113.69761 * 10 9 7 34 34 H 1.08996 * 109.49883 * 185.41827 * 11 10 9 35 35 H 1.09002 * 109.49861 * 65.31507 * 11 10 9 36 36 H 0.96998 * 119.99780 * 264.93039 * 14 12 11 37 37 H 1.08005 * 120.00308 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.00268 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.00283 * 179.70369 * 21 20 19 40 40 H 1.07999 * 120.00008 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00216 * 179.97438 * 23 22 21 42 42 H 1.09004 * 113.61079 * 203.74431 * 24 17 15 43 43 H 1.08998 * 113.62127 * 334.64670 * 24 17 15 44 44 H 1.08997 * 113.53578 * 270.80382 * 25 24 17 45 45 H 1.08997 * 113.74145 * 139.94347 * 25 24 17 46 46 H 1.09003 * 113.61096 * 220.09162 * 26 25 24 47 47 H 1.08994 * 113.61534 * 89.18884 * 26 25 24 48 48 H 0.96699 * 113.99741 * 180.02562 * 29 27 12 49 49 H 1.08995 * 109.58639 * 6.59100 * 30 9 7 50 50 H 1.08997 * 109.58733 * 246.15687 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0710 -1.2132 0.2022 9 7 1.3501 -2.3738 -0.2583 10 6 1.7998 -3.6350 0.3466 11 6 2.0103 -4.6676 -0.7653 12 6 0.7284 -4.7891 -1.5925 13 1 -0.0957 -5.0853 -0.9434 14 7 0.9151 -5.7998 -2.6364 15 6 0.7072 -7.1021 -2.3584 16 8 0.2763 -7.4292 -1.2729 17 6 1.0101 -8.1519 -3.3963 18 6 0.1566 -8.0174 -4.6311 19 6 0.7395 -7.6953 -5.8424 20 6 -0.0434 -7.5714 -6.9749 21 6 -1.4092 -7.7701 -6.8961 22 6 -1.9919 -8.0932 -5.6849 23 6 -1.2090 -8.2167 -4.5524 24 6 2.5102 -8.3049 -3.6980 25 6 2.5507 -9.3432 -2.5620 26 6 1.0556 -9.5815 -2.8316 27 6 0.4075 -3.4402 -2.2403 28 1 1.2417 -3.1317 -2.8705 29 8 -0.7725 -3.5624 -3.0371 30 6 0.1789 -2.3937 -1.1452 31 1 -0.4851 0.8400 0.0004 32 1 2.7383 -3.4720 0.8763 33 1 1.0441 -3.9954 1.0446 34 1 2.2509 -5.6343 -0.3232 35 1 2.8296 -4.3472 -1.4090 36 1 1.1884 -5.5317 -3.5276 37 1 1.8066 -7.5405 -5.9041 38 1 0.4118 -7.3194 -7.9213 39 1 -2.0215 -7.6686 -7.7800 40 1 -3.0589 -8.2481 -5.6233 41 1 -1.6643 -8.4688 -3.6061 42 1 2.7169 -8.7260 -4.6819 43 1 3.0913 -7.4064 -3.4905 44 1 2.7542 -8.9095 -1.5830 45 1 3.1770 -10.2082 -2.7802 46 1 0.4640 -9.7120 -1.9254 47 1 0.8639 -10.3521 -3.5781 48 1 -1.0352 -2.7434 -3.4790 49 1 0.0481 -1.4117 -1.5997 50 1 -0.7100 -2.6542 -0.5707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090417532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:38 Heat of formation + Delta-G solvation = -19.686949 kcal Electronic energy + Delta-G solvation = -31328.478139 eV Core-core repulsion = 27321.515059 eV Total energy + Delta-G solvation = -4006.963081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.09510 -39.06064 -38.18415 -36.93272 -35.24784 -34.31034 -32.20354 -31.35878 -31.06245 -29.51921 -28.85069 -26.42350 -25.97958 -24.90108 -22.81219 -22.42000 -22.04139 -21.73770 -20.94178 -19.71067 -18.75475 -17.54971 -16.99897 -16.59391 -16.48730 -15.98544 -15.58369 -15.07066 -14.97313 -14.82303 -14.37586 -14.05295 -13.84026 -13.66347 -13.54900 -13.44954 -13.21787 -12.85606 -12.66280 -12.55706 -12.20920 -12.10672 -11.89629 -11.74263 -11.66221 -11.26043 -11.19013 -11.06812 -10.87629 -10.77505 -10.59114 -10.44478 -10.38391 -10.18243 -10.05282 -9.83663 -9.54493 -9.33351 -9.04101 -8.80240 -8.67772 -8.53369 -6.74455 -5.87454 -3.35551 1.18969 1.28088 2.78882 3.30095 3.33967 3.39347 3.41254 3.65158 4.28364 4.39724 4.44631 4.49659 4.59560 4.65463 4.77636 4.86799 4.94127 5.01558 5.23136 5.31324 5.39374 5.42196 5.44295 5.47940 5.50007 5.56353 5.61786 5.72761 5.82583 5.89857 5.91691 5.93925 5.96714 6.00429 6.10976 6.19727 6.25227 6.34255 6.39174 6.42686 6.45940 6.49476 6.69838 6.85536 6.88256 6.90974 7.13522 7.47906 7.70911 7.78494 8.12380 8.37411 8.45822 9.11352 9.72683 10.30229 11.20645 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.003005 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.627035 B = 9317.003371 C =10241.729823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.138 4.138 12 C 0.162 3.838 13 H 0.088 0.912 14 N -0.708 5.708 15 C 0.543 3.457 16 O -0.539 6.539 17 C -0.069 4.069 18 C -0.063 4.063 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.104 4.104 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.112 4.112 27 C 0.073 3.927 28 H 0.050 0.950 29 O -0.571 6.571 30 C 0.150 3.850 31 H 0.255 0.745 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.397 0.603 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.375 0.625 49 H 0.094 0.906 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -17.332 -13.934 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.058 3.942 13 H 0.106 0.894 14 N -0.356 5.356 15 C 0.328 3.672 16 O -0.416 6.416 17 C -0.073 4.073 18 C -0.064 4.064 19 C -0.133 4.133 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.134 4.134 23 C -0.122 4.122 24 C -0.163 4.163 25 C -0.177 4.177 26 C -0.149 4.149 27 C 0.012 3.988 28 H 0.068 0.932 29 O -0.376 6.376 30 C 0.023 3.977 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.230 0.770 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.221 0.779 49 H 0.112 0.888 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.409 -18.016 -12.899 22.202 hybrid contribution 0.377 1.740 -0.695 1.911 sum 1.787 -16.276 -13.594 21.281 Atomic orbital electron populations 1.69992 1.05273 1.25565 1.53875 1.25176 0.95405 0.98544 1.00324 0.86184 0.79325 0.83680 0.77346 1.20166 1.21527 1.21556 1.19242 0.91400 0.83941 1.43957 0.91444 1.43979 1.33096 1.03242 1.50993 1.20939 0.98301 0.86400 0.92534 1.22417 0.96482 1.00004 0.98963 1.20997 0.98579 0.85797 0.88842 0.89433 1.45993 1.68985 1.05906 1.14715 1.19617 0.77244 0.82985 0.87392 1.90680 1.44996 1.81350 1.24591 1.20960 0.96456 0.96647 0.93203 1.19382 0.93610 1.00062 0.93326 1.21055 1.00052 1.00106 0.92073 1.21106 0.94002 1.00286 0.98309 1.21154 0.95106 0.99991 0.97757 1.21132 0.99808 0.99729 0.92708 1.21029 0.93186 0.99232 0.98731 1.23068 0.92961 1.00359 0.99920 1.22855 0.96699 0.99147 0.99045 1.22839 0.97259 0.93193 1.01657 1.22972 0.86458 0.95677 0.93727 0.93226 1.86435 1.46050 1.38475 1.66608 1.21416 0.89522 0.97167 0.89623 0.93507 0.92143 0.95856 0.92009 0.92038 0.76985 0.85753 0.86081 0.86226 0.86070 0.86095 0.88824 0.90664 0.89744 0.90962 0.89641 0.89504 0.77868 0.88831 0.95269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.51 11.10 55.49 0.62 -24.90 16 2 C 0.00 0.12 5.01 -17.43 -0.09 0.03 16 3 Si 0.90 21.07 29.57 -169.99 -5.03 16.05 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 9 N -0.59 -14.43 2.99 -172.33 -0.51 -14.94 16 10 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 11 C -0.14 -2.49 5.65 -26.61 -0.15 -2.65 16 12 C 0.16 2.97 2.16 -67.89 -0.15 2.82 16 13 H 0.09 1.87 7.51 -51.93 -0.39 1.48 16 14 N -0.71 -10.97 4.91 -53.76 -0.26 -11.24 16 15 C 0.54 8.44 6.28 -10.98 -0.07 8.38 16 16 O -0.54 -10.30 15.55 5.56 0.09 -10.22 16 17 C -0.07 -0.82 0.92 -156.00 -0.14 -0.96 16 18 C -0.06 -0.72 4.86 -104.62 -0.51 -1.23 16 19 C -0.11 -1.13 9.06 -39.59 -0.36 -1.49 16 20 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 21 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 22 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 23 C -0.10 -1.24 9.46 -39.59 -0.37 -1.62 16 24 C -0.13 -1.19 6.34 -25.83 -0.16 -1.35 16 25 C -0.14 -1.38 7.81 -25.83 -0.20 -1.58 16 26 C -0.11 -1.21 6.97 -25.92 -0.18 -1.39 16 27 C 0.07 1.37 3.14 -26.61 -0.08 1.29 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 O -0.57 -10.09 13.16 -35.23 -0.46 -10.55 16 30 C 0.15 3.48 4.89 -3.71 -0.02 3.46 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.40 5.51 8.61 -40.82 -0.35 5.16 16 37 H 0.12 1.00 6.39 -52.48 -0.34 0.66 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 42 H 0.09 0.71 6.77 -51.93 -0.35 0.36 16 43 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.08 1.07 7.34 -51.93 -0.38 0.69 16 47 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 48 H 0.37 5.36 9.08 45.56 0.41 5.77 16 49 H 0.09 2.37 6.10 -51.93 -0.32 2.06 16 50 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -31.53 398.70 -10.57 -42.10 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -7.16 Total: 12.56 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.85 Total: -4.87 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.16 Total: -51.08 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.38 Total: -20.77 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.53 -10.57 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090417532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.414 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds